Wall clock time and date at job start Tue Mar 31 2020 15:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31699 * 119.71475 * 2 1 4 4 C 1.31923 * 121.87824 * 180.27245 * 3 2 1 5 5 C 1.50708 * 119.45879 * 180.02562 * 4 3 2 6 6 C 1.52992 * 117.49614 * 163.59836 * 5 4 3 7 7 C 1.53000 * 117.49481 * 94.97668 * 5 4 3 8 8 C 1.38349 * 121.08297 * 359.97438 * 4 3 2 9 9 C 1.38357 * 119.30098 * 0.02562 * 8 4 3 10 10 C 1.39522 * 119.71904 * 180.26949 * 2 1 3 11 11 C 1.47837 * 120.55609 * 359.74861 * 10 2 1 12 12 O 1.21555 * 119.99729 * 55.34521 * 11 10 2 13 13 N 1.34777 * 120.00063 * 235.34705 * 11 10 2 14 14 C 1.46501 * 119.99839 * 5.66180 * 13 11 10 15 15 C 1.50700 * 109.46760 * 90.00499 * 14 13 11 16 16 H 1.07995 * 120.00136 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99819 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99811 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 119.99912 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47470 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47278 * 120.00264 * 19 17 15 22 22 H 1.48502 * 109.47270 * 239.99672 * 19 17 15 23 23 C 1.46501 * 119.99927 * 185.66656 * 13 11 10 24 24 C 1.53002 * 109.47145 * 89.92508 * 23 13 11 25 25 C 1.52998 * 109.47333 * 63.03531 * 24 23 13 26 26 C 1.52994 * 109.47146 * 183.03638 * 24 23 13 27 27 C 1.53001 * 109.46984 * 303.03481 * 24 23 13 28 28 H 1.08996 * 109.47569 * 264.14841 * 1 2 3 29 29 H 1.09000 * 109.46899 * 24.15322 * 1 2 3 30 30 H 1.09007 * 109.46593 * 144.14287 * 1 2 3 31 31 H 1.08997 * 115.54620 * 309.31029 * 5 4 3 32 32 H 1.09001 * 117.50234 * 0.02562 * 6 5 4 33 33 H 1.09003 * 117.49369 * 145.02247 * 6 5 4 34 34 H 1.09001 * 117.49881 * 214.97814 * 7 5 4 35 35 H 1.08999 * 117.50281 * 359.97438 * 7 5 4 36 36 H 1.07997 * 120.35247 * 180.02562 * 8 4 3 37 37 H 1.08003 * 120.85473 * 180.02562 * 9 8 4 38 38 H 1.08998 * 109.46868 * 210.00382 * 14 13 11 39 39 H 1.09000 * 109.47101 * 330.00255 * 14 13 11 40 40 H 0.97008 * 120.00070 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.46669 * 209.92267 * 23 13 11 42 42 H 1.08994 * 109.47310 * 329.92545 * 23 13 11 43 43 H 1.08997 * 109.47358 * 59.99570 * 25 24 23 44 44 H 1.09002 * 109.47581 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.47248 * 300.00355 * 25 24 23 46 46 H 1.09002 * 109.47483 * 59.99963 * 26 24 23 47 47 H 1.09004 * 109.47668 * 180.02562 * 26 24 23 48 48 H 1.09005 * 109.47131 * 299.99702 * 26 24 23 49 49 H 1.09000 * 109.46910 * 65.60702 * 27 24 23 50 50 H 1.09008 * 109.46790 * 185.60422 * 27 24 23 51 51 H 1.08997 * 109.47207 * 305.60408 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0053 5 6 4.1692 2.5329 -0.0044 6 6 5.6516 2.5625 0.3727 7 6 4.6034 3.1028 1.3475 8 6 4.2366 0.0366 -0.0107 9 6 3.5987 -1.1912 -0.0109 10 6 2.1987 -1.2117 -0.0057 11 6 1.4657 -2.4955 -0.0062 12 8 0.6412 -2.7243 -0.8696 13 7 1.7116 -3.4123 0.9508 14 6 2.6119 -3.0893 2.0604 15 6 1.8185 -2.4896 3.1927 16 1 0.7506 -2.3614 3.0952 17 6 2.4560 -2.1046 4.3530 18 7 3.7565 -2.2602 4.4714 19 14 1.4728 -1.3606 5.7561 20 1 0.0394 -1.2923 5.3745 21 1 1.6231 -2.2051 6.9684 22 1 1.9744 0.0078 6.0410 23 6 1.0786 -4.7316 0.8811 24 6 1.9762 -5.6870 0.0921 25 6 3.3037 -5.8669 0.8312 26 6 1.2813 -7.0430 -0.0455 27 6 2.2413 -5.1062 -1.2984 28 1 -0.3634 -0.1048 1.0222 29 1 -0.3633 0.9377 -0.4205 30 1 -0.3633 -0.8330 -0.6020 31 1 3.8280 3.2384 -0.7619 32 1 6.1272 1.6134 0.6198 33 1 6.2861 3.2877 -0.1369 34 1 4.5483 4.1834 1.4792 35 1 4.3888 2.5094 2.2362 36 1 5.3152 0.0911 -0.0146 37 1 4.1661 -2.1102 -0.0146 38 1 3.1054 -3.9984 2.4041 39 1 3.3619 -2.3739 1.7234 40 1 4.2051 -1.9897 5.2879 41 1 0.9338 -5.1187 1.8897 42 1 0.1130 -4.6455 0.3829 43 1 3.1149 -6.2805 1.8218 44 1 3.9431 -6.5478 0.2694 45 1 3.7988 -4.9008 0.9293 46 1 0.3356 -6.9149 -0.5721 47 1 1.9209 -7.7238 -0.6073 48 1 1.0924 -7.4567 0.9451 49 1 2.8237 -4.1897 -1.2043 50 1 2.7969 -5.8302 -1.8946 51 1 1.2923 -4.8852 -1.7868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294720970.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:05 Heat of formation + Delta-G solvation = -2.324926 kcal Electronic energy + Delta-G solvation = -30110.316261 eV Core-core repulsion = 26395.476768 eV Total energy + Delta-G solvation = -3714.839493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96224 -40.58762 -38.33741 -37.70438 -36.13305 -34.38898 -33.81219 -33.07828 -29.55437 -29.01073 -28.13443 -28.09095 -27.37890 -25.83999 -24.67070 -23.76714 -22.89974 -21.91573 -20.73734 -19.60952 -18.77297 -18.14004 -17.86575 -17.25447 -17.15938 -16.46981 -16.27653 -15.88190 -15.51191 -15.28542 -15.12860 -14.87068 -14.63020 -14.44965 -14.32786 -14.05973 -13.72331 -13.63410 -13.40693 -13.21331 -13.12091 -13.02554 -12.82706 -12.73721 -12.65230 -12.50695 -12.48789 -12.31530 -12.12649 -12.02753 -11.71743 -11.57740 -11.51500 -11.48114 -11.37675 -10.95562 -10.78974 -10.54435 -10.32544 -9.69845 -9.37160 -8.22820 -6.34331 -0.15403 0.23409 1.31773 1.35914 1.44766 1.70096 2.22954 2.38641 2.63414 2.85249 3.07773 3.22587 3.59214 3.67037 3.75267 3.89236 3.93012 3.97321 4.02301 4.06508 4.14289 4.22685 4.48350 4.54948 4.57667 4.58530 4.63176 4.65832 4.75698 4.78798 4.82097 4.88638 4.90406 4.93153 4.95953 5.03998 5.05897 5.07207 5.09213 5.10024 5.20768 5.22328 5.25450 5.26859 5.33116 5.48073 5.52786 5.62054 5.66335 5.86062 6.07369 6.51290 6.78309 6.94440 7.24206 7.37639 8.81930 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.005396 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.840574 B = 5187.585559 C = 6729.704827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.158 3.842 3 N -0.500 5.500 4 C 0.163 3.837 5 C -0.121 4.121 6 C -0.150 4.150 7 C -0.168 4.168 8 C -0.179 4.179 9 C -0.036 4.036 10 C -0.181 4.181 11 C 0.571 3.429 12 O -0.574 6.574 13 N -0.581 5.581 14 C 0.243 3.757 15 C -0.543 4.543 16 H 0.043 0.957 17 C 0.028 3.972 18 N -0.911 5.911 19 Si 0.941 3.059 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.282 1.282 23 C 0.125 3.875 24 C -0.079 4.079 25 C -0.136 4.136 26 C -0.130 4.130 27 C -0.124 4.124 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.166 0.834 37 H 0.142 0.858 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.027 0.973 50 H 0.067 0.933 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 1.266 -8.749 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.020 3.980 3 N -0.210 5.210 4 C 0.025 3.975 5 C -0.140 4.140 6 C -0.187 4.187 7 C -0.205 4.205 8 C -0.198 4.198 9 C -0.062 4.062 10 C -0.186 4.186 11 C 0.359 3.641 12 O -0.456 6.456 13 N -0.309 5.309 14 C 0.122 3.878 15 C -0.582 4.582 16 H 0.062 0.938 17 C -0.173 4.173 18 N -0.551 5.551 19 Si 0.768 3.232 20 H -0.199 1.199 21 H -0.198 1.198 22 H -0.208 1.208 23 C 0.002 3.998 24 C -0.080 4.080 25 C -0.193 4.193 26 C -0.188 4.188 27 C -0.181 4.181 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.046 0.954 50 H 0.086 0.914 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.828 1.900 -9.029 9.650 hybrid contribution -0.099 -0.407 1.316 1.381 sum 2.729 1.493 -7.713 8.317 Atomic orbital electron populations 1.20825 0.88026 1.04604 1.02968 1.21391 0.97595 0.86855 0.92137 1.67244 1.10313 1.28455 1.14942 1.20966 0.88775 0.95313 0.92442 1.20846 0.97877 0.93625 1.01624 1.23226 0.89832 1.03958 1.01656 1.23003 1.03466 1.01950 0.92115 1.22073 1.02732 0.91606 1.03404 1.21722 0.92543 0.99534 0.92390 1.20725 0.95464 0.95014 1.07429 1.18034 0.81653 0.83223 0.81220 1.90628 1.35896 1.79694 1.39396 1.48028 1.46186 1.13078 1.23633 1.19417 0.88831 0.96638 0.82883 1.21685 0.94247 1.41604 1.00642 0.93846 1.25469 0.95716 0.95884 1.00213 1.69978 1.08838 1.48055 1.28190 0.85751 0.79117 0.78366 0.80003 1.19923 1.19801 1.20788 1.21571 0.96004 0.81750 1.00460 1.20924 0.95969 0.95876 0.95265 1.21902 0.96343 1.01248 0.99836 1.21740 1.00363 0.94353 1.02317 1.21739 1.01044 0.99502 0.95833 0.91200 0.89019 0.89683 0.84929 0.88256 0.85066 0.86077 0.91091 0.81700 0.84058 0.94435 0.94620 0.92459 0.90968 0.91307 0.93020 0.91282 0.94031 0.92426 0.90956 0.92054 0.95388 0.91419 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.94 9.66 71.24 0.69 -3.26 16 2 C 0.16 6.44 6.82 42.89 0.29 6.73 16 3 N -0.50 -19.23 10.17 -171.05 -1.74 -20.97 16 4 C 0.16 5.48 6.46 42.57 0.28 5.76 16 5 C -0.12 -3.05 6.21 -11.54 -0.07 -3.12 16 6 C -0.15 -2.87 9.79 30.59 0.30 -2.57 16 7 C -0.17 -3.94 10.23 30.59 0.31 -3.62 16 8 C -0.18 -5.84 9.34 22.32 0.21 -5.63 16 9 C -0.04 -1.34 7.69 22.73 0.17 -1.16 16 10 C -0.18 -7.50 4.93 -20.00 -0.10 -7.60 16 11 C 0.57 24.21 4.83 86.78 0.42 24.63 16 12 O -0.57 -25.24 13.21 -3.89 -0.05 -25.29 16 13 N -0.58 -24.17 2.00 -829.59 -1.66 -25.83 16 14 C 0.24 11.42 4.00 85.63 0.34 11.76 16 15 C -0.54 -28.80 9.39 25.60 0.24 -28.56 16 16 H 0.04 2.40 7.81 -2.91 -0.02 2.37 16 17 C 0.03 1.49 5.46 84.66 0.46 1.95 16 18 N -0.91 -49.76 13.29 21.45 0.28 -49.47 16 19 Si 0.94 43.04 29.54 68.60 2.03 45.07 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 23 C 0.12 4.52 4.61 86.38 0.40 4.92 16 24 C -0.08 -2.34 0.85 -52.18 -0.04 -2.39 16 25 C -0.14 -4.04 7.36 71.98 0.53 -3.51 16 26 C -0.13 -3.02 8.47 71.98 0.61 -2.41 16 27 C -0.12 -3.76 7.14 71.98 0.51 -3.25 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.08 3.24 5.97 -2.38 -0.01 3.23 16 31 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.10 1.95 6.38 -2.39 -0.02 1.93 16 33 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.17 4.21 6.23 -2.91 -0.02 4.19 16 37 H 0.14 4.92 7.55 -2.91 -0.02 4.89 16 38 H 0.04 1.82 6.03 -2.39 -0.01 1.81 16 39 H 0.04 1.75 4.50 -2.39 -0.01 1.74 16 40 H 0.27 13.82 8.31 -92.70 -0.77 13.05 16 41 H 0.07 2.66 8.07 -2.39 -0.02 2.64 16 42 H 0.07 2.54 7.35 -2.39 -0.02 2.52 16 43 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.04 1.42 5.93 -2.39 -0.01 1.40 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 49 H 0.03 0.94 6.70 -2.39 -0.02 0.93 16 50 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 51 H 0.05 1.61 7.33 -2.39 -0.02 1.59 16 Total: -1.00 -62.72 398.62 5.33 -57.39 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.92 Total: 30.44 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.55 Total: -11.33 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.11 Total: -96.27 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -62.72 5.33 -57.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294720970.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.062 kcal (2) G-P(sol) polarization free energy of solvation -62.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds