Wall clock time and date at job start Tue Mar 31 2020 16:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.29927 * 2 1 4 4 C 1.50256 * 109.38774 * 119.74564 * 2 1 3 5 5 O 1.21286 * 118.62250 * 282.97283 * 4 2 1 6 6 N 1.33709 * 122.75396 * 102.95292 * 4 2 1 7 7 C 1.46497 * 118.53950 * 181.70871 * 6 4 2 8 8 C 1.50693 * 109.47118 * 89.99941 * 7 6 4 9 9 C 1.38237 * 120.00054 * 269.72456 * 8 7 6 10 10 C 1.38235 * 120.00004 * 179.76508 * 9 8 7 11 11 C 1.38236 * 119.99894 * 0.51344 * 10 9 8 12 12 C 1.38235 * 120.00214 * 359.74254 * 11 10 9 13 13 C 1.38236 * 119.99985 * 90.00307 * 8 7 6 14 14 C 1.46013 * 122.92685 * 1.68876 * 6 4 2 15 15 C 1.52988 * 110.04153 * 341.83708 * 14 6 4 16 16 N 1.46902 * 109.38441 * 240.26382 * 2 1 3 17 17 C 1.46895 * 111.00084 * 166.77396 * 16 2 1 18 18 C 1.52998 * 109.47212 * 169.99834 * 17 16 2 19 19 C 1.52999 * 109.47342 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47491 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99693 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00128 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99797 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47358 * 59.99910 * 24 22 20 26 26 H 1.48506 * 109.47009 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47102 * 299.99776 * 24 22 20 28 28 H 1.09004 * 109.46805 * 300.25456 * 1 2 3 29 29 H 1.08992 * 109.47348 * 60.25633 * 1 2 3 30 30 H 1.08997 * 109.47245 * 180.25817 * 1 2 3 31 31 H 1.09003 * 109.46725 * 179.74372 * 3 2 1 32 32 H 1.08994 * 109.47422 * 299.74492 * 3 2 1 33 33 H 1.08999 * 109.46950 * 59.74982 * 3 2 1 34 34 H 1.09003 * 109.47313 * 210.00486 * 7 6 4 35 35 H 1.09003 * 109.46769 * 329.99645 * 7 6 4 36 36 H 1.08003 * 119.99856 * 0.02562 * 9 8 7 37 37 H 1.07999 * 119.99918 * 180.23531 * 10 9 8 38 38 H 1.07997 * 120.00171 * 179.72142 * 11 10 9 39 39 H 1.07995 * 120.00618 * 179.97438 * 12 11 10 40 40 H 1.07996 * 120.00243 * 0.02562 * 13 8 7 41 41 H 1.08995 * 109.37786 * 102.01074 * 14 6 4 42 42 H 1.09002 * 109.37280 * 221.66595 * 14 6 4 43 43 H 1.08996 * 109.59692 * 170.06954 * 15 14 6 44 44 H 1.09006 * 109.59254 * 290.36963 * 15 14 6 45 45 H 1.08998 * 109.47195 * 289.99877 * 17 16 2 46 46 H 1.09001 * 109.47250 * 49.99738 * 17 16 2 47 47 H 1.09008 * 109.47311 * 299.99635 * 18 17 16 48 48 H 1.09001 * 109.47092 * 59.99807 * 18 17 16 49 49 H 1.08998 * 109.46956 * 299.99976 * 19 18 17 50 50 H 1.09001 * 109.47358 * 59.99758 * 19 18 17 51 51 H 0.97004 * 119.99994 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0357 1.4440 0.0000 4 6 2.0288 -0.7032 1.2306 5 8 1.9962 -0.1137 2.2901 6 7 2.5067 -1.9518 1.2067 7 6 2.9336 -2.5621 2.4682 8 6 1.7675 -3.2775 3.1000 9 6 0.9386 -2.6060 3.9792 10 6 -0.1340 -3.2609 4.5550 11 6 -0.3715 -4.5904 4.2598 12 6 0.4605 -5.2634 3.3847 13 6 1.5300 -4.6069 2.8048 14 6 2.6217 -2.7342 -0.0207 15 6 1.7373 -2.1295 -1.1128 16 7 2.0176 -0.6873 -1.2033 17 6 3.4516 -0.4414 -1.4054 18 6 3.9763 -1.3616 -2.5094 19 6 5.4701 -1.1060 -2.7194 20 6 5.9867 -2.0119 -3.8073 21 1 5.3167 -2.7014 -4.2994 22 6 7.3149 -1.9613 -4.1737 23 7 8.1309 -1.1220 -3.5742 24 14 7.9551 -3.0837 -5.5227 25 1 7.2239 -2.8073 -6.7852 26 1 9.4050 -2.8356 -5.7265 27 1 7.7453 -4.5002 -5.1291 28 1 -0.3633 0.5178 0.8877 29 1 -0.3633 0.5098 -0.8922 30 1 -0.3633 -1.0276 0.0046 31 1 3.1257 1.4472 0.0046 32 1 1.6746 1.9555 -0.8922 33 1 1.6671 1.9580 0.8877 34 1 3.7353 -3.2747 2.2742 35 1 3.2931 -1.7860 3.1439 36 1 1.1265 -1.5685 4.2130 37 1 -0.7838 -2.7352 5.2389 38 1 -1.2068 -5.1033 4.7131 39 1 0.2753 -6.3021 3.1544 40 1 2.1804 -5.1330 2.1218 41 1 3.6594 -2.7335 -0.3541 42 1 2.3067 -3.7595 0.1733 43 1 1.9588 -2.6056 -2.0679 44 1 0.6881 -2.2852 -0.8614 45 1 3.6047 0.5980 -1.6955 46 1 3.9890 -0.6428 -0.4786 47 1 3.8233 -2.4012 -2.2192 48 1 3.4389 -1.1602 -3.4361 49 1 5.6235 -0.0665 -3.0094 50 1 6.0071 -1.3077 -1.7926 51 1 9.0653 -1.0861 -3.8322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295385734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:39 Heat of formation + Delta-G solvation = -3.887797 kcal Electronic energy + Delta-G solvation = -29549.271389 eV Core-core repulsion = 25834.364124 eV Total energy + Delta-G solvation = -3714.907265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32211 -39.32003 -37.65147 -35.93572 -34.14962 -32.60884 -31.96254 -31.05883 -30.56069 -28.93142 -27.42735 -26.60012 -26.03836 -23.72012 -22.83095 -22.43512 -22.14482 -21.06400 -19.92661 -17.85888 -17.26062 -17.04138 -16.63383 -16.24707 -15.83489 -15.42439 -15.11087 -14.91432 -14.76146 -14.42160 -14.35590 -13.66821 -13.57472 -13.31181 -13.10520 -12.92792 -12.69104 -12.42993 -12.30093 -12.20533 -12.08339 -11.91165 -11.84468 -11.61409 -11.49703 -11.39150 -11.25423 -11.09670 -10.88656 -10.79449 -10.55626 -10.40001 -10.10626 -9.71266 -9.39035 -9.10690 -9.08451 -9.02689 -8.71526 -8.37208 -8.09141 -6.02321 -4.05088 1.10434 1.24156 2.63781 2.89911 3.30960 3.36002 3.37807 3.68687 3.94166 4.36583 4.43851 4.62309 4.67112 4.80713 4.82737 4.89780 4.93815 4.96338 5.12861 5.15236 5.29027 5.32306 5.33522 5.48802 5.54501 5.63251 5.64803 5.66257 5.71202 5.80475 5.81893 5.83713 5.86364 5.89845 5.92709 6.13461 6.15663 6.26972 6.27937 6.30890 6.34128 6.47055 6.58093 6.69402 6.82890 6.95339 7.12822 7.22014 7.40363 7.63865 7.77608 7.97098 8.15446 8.39246 9.01873 9.59211 11.08938 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.003126 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.919837 B = 8953.638288 C =10077.452125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.097 3.903 3 C -0.134 4.134 4 C 0.500 3.500 5 O -0.548 6.548 6 N -0.596 5.596 7 C 0.145 3.855 8 C -0.101 4.101 9 C -0.095 4.095 10 C -0.125 4.125 11 C -0.120 4.120 12 C -0.125 4.125 13 C -0.107 4.107 14 C 0.069 3.931 15 C 0.035 3.965 16 N -0.517 5.517 17 C 0.047 3.953 18 C -0.111 4.111 19 C 0.024 3.976 20 C -0.520 4.520 21 H 0.054 0.946 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.032 0.968 47 H 0.050 0.950 48 H 0.058 0.942 49 H 0.016 0.984 50 H 0.012 0.988 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.628 -4.189 13.321 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.003 3.997 3 C -0.191 4.191 4 C 0.287 3.713 5 O -0.425 6.425 6 N -0.328 5.328 7 C 0.023 3.977 8 C -0.102 4.102 9 C -0.114 4.114 10 C -0.143 4.143 11 C -0.138 4.138 12 C -0.143 4.143 13 C -0.126 4.126 14 C -0.055 4.055 15 C -0.094 4.094 16 N -0.241 5.241 17 C -0.079 4.079 18 C -0.149 4.149 19 C -0.014 4.014 20 C -0.559 4.559 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.719 3.281 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.034 0.966 50 H 0.031 0.969 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.693 -3.591 13.434 22.503 hybrid contribution 0.970 -1.172 -0.048 1.522 sum -16.723 -4.763 13.386 21.944 Atomic orbital electron populations 1.21755 0.91476 1.02316 1.02992 1.21275 0.97150 0.95618 0.85609 1.21838 1.01861 0.92479 1.02968 1.21181 0.76897 0.81197 0.92071 1.90622 1.55460 1.64578 1.31876 1.47516 1.63323 1.14049 1.07865 1.20400 0.93693 0.97540 0.86063 1.20233 0.98098 0.94212 0.97702 1.21248 0.94199 1.00148 0.95793 1.21175 0.97895 0.94898 1.00344 1.21160 0.99453 0.94828 0.98382 1.21120 0.95529 0.99892 0.97750 1.21098 0.97813 0.94163 0.99494 1.22343 1.02790 0.95772 0.84557 1.22628 0.99157 0.88753 0.98827 1.62772 1.18462 1.08621 1.34247 1.22469 0.84684 1.01801 0.98972 1.21832 0.99745 0.97002 0.96330 1.19041 0.88480 0.97178 0.96667 1.21179 0.94203 1.20990 1.19488 0.92740 1.25020 0.97114 0.95661 0.96614 1.69953 1.04817 1.36660 1.42003 0.86675 0.77773 0.81140 0.82505 1.20211 1.21323 1.20279 0.91674 0.90450 0.92566 0.91866 0.90722 0.91147 0.89583 0.88768 0.85431 0.86215 0.86299 0.86129 0.86101 0.89776 0.90566 0.87562 0.90263 0.90323 0.94942 0.93098 0.92308 0.96569 0.96935 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.44 37.16 0.31 -1.14 16 2 C 0.10 1.30 0.64 -132.97 -0.09 1.21 16 3 C -0.13 -1.76 7.49 37.16 0.28 -1.48 16 4 C 0.50 7.40 5.57 -11.68 -0.07 7.33 16 5 O -0.55 -9.25 14.81 5.55 0.08 -9.17 16 6 N -0.60 -7.94 2.63 -175.96 -0.46 -8.41 16 7 C 0.15 1.78 5.41 -5.20 -0.03 1.75 16 8 C -0.10 -1.17 5.45 -104.63 -0.57 -1.74 16 9 C -0.10 -1.12 9.61 -39.58 -0.38 -1.50 16 10 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 11 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 12 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 13 C -0.11 -1.09 9.58 -39.58 -0.38 -1.47 16 14 C 0.07 0.85 5.46 -4.31 -0.02 0.83 16 15 C 0.03 0.43 5.30 -3.67 -0.02 0.41 16 16 N -0.52 -7.20 4.78 -220.32 -1.05 -8.26 16 17 C 0.05 0.78 3.32 -3.83 -0.01 0.77 16 18 C -0.11 -2.12 4.22 -26.73 -0.11 -2.23 16 19 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 20 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 21 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 24 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.62 6.48 -51.93 -0.34 0.29 16 31 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 34 H 0.09 0.93 7.98 -51.93 -0.41 0.51 16 35 H 0.09 1.26 7.15 -51.93 -0.37 0.89 16 36 H 0.13 1.63 7.41 -52.48 -0.39 1.24 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.12 1.06 8.01 -52.49 -0.42 0.64 16 41 H 0.08 1.19 5.83 -51.93 -0.30 0.89 16 42 H 0.08 0.79 7.95 -51.93 -0.41 0.37 16 43 H 0.11 1.30 6.58 -51.93 -0.34 0.96 16 44 H 0.08 0.88 6.25 -51.93 -0.32 0.56 16 45 H 0.08 1.34 6.88 -51.93 -0.36 0.98 16 46 H 0.03 0.57 6.35 -51.93 -0.33 0.24 16 47 H 0.05 0.91 5.16 -51.92 -0.27 0.64 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -31.19 392.02 -11.00 -42.19 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.36 Total: 1.94 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.83 Total: -14.61 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.78 Total: -42.52 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.19 -11.00 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295385734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.302 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds