Wall clock time and date at job start Tue Mar 31 2020 16:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.29927 * 2 1 4 4 C 1.50256 * 109.38774 * 119.74564 * 2 1 3 5 5 O 1.21286 * 118.62250 * 282.97283 * 4 2 1 6 6 N 1.33709 * 122.75396 * 102.95292 * 4 2 1 7 7 C 1.46497 * 118.53950 * 181.70871 * 6 4 2 8 8 C 1.50693 * 109.47118 * 89.99941 * 7 6 4 9 9 C 1.38237 * 120.00054 * 269.72456 * 8 7 6 10 10 C 1.38235 * 120.00004 * 179.76508 * 9 8 7 11 11 C 1.38236 * 119.99894 * 0.51344 * 10 9 8 12 12 C 1.38235 * 120.00214 * 359.74254 * 11 10 9 13 13 C 1.38236 * 119.99985 * 90.00307 * 8 7 6 14 14 C 1.46013 * 122.92685 * 1.68876 * 6 4 2 15 15 C 1.52988 * 110.04153 * 341.83708 * 14 6 4 16 16 N 1.46902 * 109.38441 * 240.26382 * 2 1 3 17 17 C 1.46895 * 111.00084 * 166.77396 * 16 2 1 18 18 C 1.52998 * 109.47212 * 169.99834 * 17 16 2 19 19 C 1.52999 * 109.47342 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47491 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99693 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00128 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99797 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47358 * 59.99910 * 24 22 20 26 26 H 1.48506 * 109.47009 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47102 * 299.99776 * 24 22 20 28 28 H 1.09004 * 109.46805 * 300.25456 * 1 2 3 29 29 H 1.08992 * 109.47348 * 60.25633 * 1 2 3 30 30 H 1.08997 * 109.47245 * 180.25817 * 1 2 3 31 31 H 1.09003 * 109.46725 * 179.74372 * 3 2 1 32 32 H 1.08994 * 109.47422 * 299.74492 * 3 2 1 33 33 H 1.08999 * 109.46950 * 59.74982 * 3 2 1 34 34 H 1.09003 * 109.47313 * 210.00486 * 7 6 4 35 35 H 1.09003 * 109.46769 * 329.99645 * 7 6 4 36 36 H 1.08003 * 119.99856 * 0.02562 * 9 8 7 37 37 H 1.07999 * 119.99918 * 180.23531 * 10 9 8 38 38 H 1.07997 * 120.00171 * 179.72142 * 11 10 9 39 39 H 1.07995 * 120.00618 * 179.97438 * 12 11 10 40 40 H 1.07996 * 120.00243 * 0.02562 * 13 8 7 41 41 H 1.08995 * 109.37786 * 102.01074 * 14 6 4 42 42 H 1.09002 * 109.37280 * 221.66595 * 14 6 4 43 43 H 1.08996 * 109.59692 * 170.06954 * 15 14 6 44 44 H 1.09006 * 109.59254 * 290.36963 * 15 14 6 45 45 H 1.08998 * 109.47195 * 289.99877 * 17 16 2 46 46 H 1.09001 * 109.47250 * 49.99738 * 17 16 2 47 47 H 1.09008 * 109.47311 * 299.99635 * 18 17 16 48 48 H 1.09001 * 109.47092 * 59.99807 * 18 17 16 49 49 H 1.08998 * 109.46956 * 299.99976 * 19 18 17 50 50 H 1.09001 * 109.47358 * 59.99758 * 19 18 17 51 51 H 0.97004 * 119.99994 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0357 1.4440 0.0000 4 6 2.0288 -0.7032 1.2306 5 8 1.9962 -0.1137 2.2901 6 7 2.5067 -1.9518 1.2067 7 6 2.9336 -2.5621 2.4682 8 6 1.7675 -3.2775 3.1000 9 6 0.9386 -2.6060 3.9792 10 6 -0.1340 -3.2609 4.5550 11 6 -0.3715 -4.5904 4.2598 12 6 0.4605 -5.2634 3.3847 13 6 1.5300 -4.6069 2.8048 14 6 2.6217 -2.7342 -0.0207 15 6 1.7373 -2.1295 -1.1128 16 7 2.0176 -0.6873 -1.2033 17 6 3.4516 -0.4414 -1.4054 18 6 3.9763 -1.3616 -2.5094 19 6 5.4701 -1.1060 -2.7194 20 6 5.9867 -2.0119 -3.8073 21 1 5.3167 -2.7014 -4.2994 22 6 7.3149 -1.9613 -4.1737 23 7 8.1309 -1.1220 -3.5742 24 14 7.9551 -3.0837 -5.5227 25 1 7.2239 -2.8073 -6.7852 26 1 9.4050 -2.8356 -5.7265 27 1 7.7453 -4.5002 -5.1291 28 1 -0.3633 0.5178 0.8877 29 1 -0.3633 0.5098 -0.8922 30 1 -0.3633 -1.0276 0.0046 31 1 3.1257 1.4472 0.0046 32 1 1.6746 1.9555 -0.8922 33 1 1.6671 1.9580 0.8877 34 1 3.7353 -3.2747 2.2742 35 1 3.2931 -1.7860 3.1439 36 1 1.1265 -1.5685 4.2130 37 1 -0.7838 -2.7352 5.2389 38 1 -1.2068 -5.1033 4.7131 39 1 0.2753 -6.3021 3.1544 40 1 2.1804 -5.1330 2.1218 41 1 3.6594 -2.7335 -0.3541 42 1 2.3067 -3.7595 0.1733 43 1 1.9588 -2.6056 -2.0679 44 1 0.6881 -2.2852 -0.8614 45 1 3.6047 0.5980 -1.6955 46 1 3.9890 -0.6428 -0.4786 47 1 3.8233 -2.4012 -2.2192 48 1 3.4389 -1.1602 -3.4361 49 1 5.6235 -0.0665 -3.0094 50 1 6.0071 -1.3077 -1.7926 51 1 9.0653 -1.0861 -3.8322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295385734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:38 Heat of formation + Delta-G solvation = -21.174819 kcal Electronic energy + Delta-G solvation = -29550.021010 eV Core-core repulsion = 25834.364124 eV Total energy + Delta-G solvation = -3715.656886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.42751 -40.13532 -38.85708 -36.96220 -35.92999 -34.14942 -33.10391 -31.86501 -31.81779 -30.18244 -28.50455 -27.79613 -27.44927 -25.10414 -23.89310 -23.49511 -23.31153 -22.03267 -21.45953 -19.06165 -18.31281 -18.29622 -17.95520 -17.70414 -16.83569 -16.56930 -16.34339 -16.04510 -15.95055 -15.79114 -15.50768 -14.84224 -14.48433 -14.37136 -14.26729 -14.06457 -14.00977 -13.67576 -13.51045 -13.32640 -13.26068 -13.14249 -13.00420 -12.88094 -12.77828 -12.67493 -12.52797 -12.41317 -12.19132 -12.03629 -11.88286 -11.74525 -11.54299 -11.30087 -11.19228 -11.06792 -10.52623 -9.91212 -9.85250 -9.71808 -9.25663 -8.17623 -6.28561 0.31605 0.46960 1.42210 1.44907 1.50179 1.52576 1.87893 2.42511 2.77516 2.91443 3.16202 3.31770 3.72983 3.77063 3.84374 3.86851 3.96685 4.06667 4.13031 4.21603 4.23581 4.26890 4.29677 4.45842 4.52125 4.59873 4.64689 4.66007 4.71834 4.73827 4.75699 4.77088 4.80909 4.93313 4.97396 5.05482 5.09346 5.12980 5.18560 5.20718 5.25834 5.30206 5.53439 5.54922 5.58777 5.65988 5.75030 5.87721 5.90355 5.96067 6.07849 6.27171 6.32230 6.89179 7.02965 7.41102 8.94144 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.003126 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.919837 B = 8953.638288 C =10077.452125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.095 3.905 3 C -0.131 4.131 4 C 0.492 3.508 5 O -0.577 6.577 6 N -0.595 5.595 7 C 0.145 3.855 8 C -0.112 4.112 9 C -0.115 4.115 10 C -0.131 4.131 11 C -0.119 4.119 12 C -0.125 4.125 13 C -0.112 4.112 14 C 0.071 3.929 15 C 0.033 3.967 16 N -0.511 5.511 17 C 0.063 3.937 18 C -0.093 4.093 19 C 0.028 3.972 20 C -0.537 4.537 21 H 0.065 0.935 22 C -0.002 4.002 23 N -0.936 5.936 24 Si 0.963 3.037 25 H -0.266 1.266 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.136 0.864 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.070 0.930 46 H 0.016 0.984 47 H 0.067 0.933 48 H 0.061 0.939 49 H -0.014 1.014 50 H -0.016 1.016 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.810 -6.751 12.442 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.002 3.998 3 C -0.189 4.189 4 C 0.279 3.721 5 O -0.456 6.456 6 N -0.325 5.325 7 C 0.023 3.977 8 C -0.113 4.113 9 C -0.134 4.134 10 C -0.149 4.149 11 C -0.137 4.137 12 C -0.142 4.142 13 C -0.130 4.130 14 C -0.053 4.053 15 C -0.095 4.095 16 N -0.235 5.235 17 C -0.064 4.064 18 C -0.130 4.130 19 C -0.010 4.010 20 C -0.575 4.575 21 H 0.084 0.916 22 C -0.200 4.200 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.191 1.191 26 H -0.213 1.213 27 H -0.189 1.189 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.034 0.966 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.005 0.995 50 H 0.003 0.997 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.895 -6.178 12.549 24.320 hybrid contribution 1.646 -0.373 0.301 1.714 sum -18.249 -6.551 12.850 23.261 Atomic orbital electron populations 1.21719 0.89413 1.02974 1.03678 1.21385 0.98597 0.95205 0.84600 1.21820 1.00549 0.92881 1.03675 1.21506 0.76829 0.81575 0.92158 1.90609 1.56845 1.65281 1.32908 1.47603 1.62496 1.13848 1.08602 1.20416 0.94699 0.97165 0.85432 1.20149 0.97914 0.94994 0.98286 1.21202 0.95564 0.99534 0.97085 1.21392 0.97479 0.95668 1.00389 1.21508 0.99993 0.94325 0.97903 1.21473 0.94740 1.01057 0.96969 1.21285 0.98451 0.93453 0.99825 1.22372 1.01707 0.97073 0.84145 1.22763 1.00289 0.87378 0.99076 1.62757 1.16050 1.10105 1.34591 1.22131 0.86434 1.00618 0.97224 1.21566 0.95644 0.98489 0.97341 1.18932 0.92207 0.95059 0.94756 1.21657 0.94708 1.21248 1.19872 0.91649 1.25986 0.97549 0.97234 0.99182 1.70105 1.05150 1.38578 1.43845 0.85533 0.76918 0.79371 0.79434 1.19113 1.21348 1.18889 0.91699 0.89032 0.91888 0.93872 0.89304 0.91100 0.88362 0.90947 0.87564 0.84810 0.83660 0.83563 0.84665 0.91816 0.87882 0.86944 0.88231 0.91194 0.96591 0.91495 0.92021 0.99514 0.99724 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.44 71.98 0.61 -1.91 16 2 C 0.10 2.50 0.64 2.64 0.00 2.50 16 3 C -0.13 -3.50 7.49 71.98 0.54 -2.96 16 4 C 0.49 14.75 5.57 87.68 0.49 15.23 16 5 O -0.58 -20.29 14.81 -3.05 -0.05 -20.33 16 6 N -0.59 -15.82 2.63 -829.59 -2.18 -18.00 16 7 C 0.14 3.63 5.41 85.63 0.46 4.09 16 8 C -0.11 -2.55 5.45 -19.87 -0.11 -2.65 16 9 C -0.12 -2.74 9.61 22.27 0.21 -2.53 16 10 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 11 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 12 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 13 C -0.11 -2.04 9.58 22.27 0.21 -1.83 16 14 C 0.07 1.64 5.46 86.47 0.47 2.12 16 15 C 0.03 0.73 5.30 86.24 0.46 1.19 16 16 N -0.51 -13.67 4.78 -850.97 -4.06 -17.74 16 17 C 0.06 2.12 3.32 86.30 0.29 2.41 16 18 C -0.09 -3.52 4.22 30.59 0.13 -3.39 16 19 C 0.03 1.44 4.97 29.85 0.15 1.59 16 20 C -0.54 -29.56 9.11 25.60 0.23 -29.32 16 21 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 22 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 23 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 24 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 26 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.24 6.48 -2.39 -0.02 1.22 16 31 H 0.04 1.30 6.56 -2.39 -0.02 1.28 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 1.86 7.82 -2.39 -0.02 1.84 16 34 H 0.10 2.13 7.98 -2.39 -0.02 2.11 16 35 H 0.07 2.10 7.15 -2.39 -0.02 2.08 16 36 H 0.11 2.92 7.41 -2.91 -0.02 2.89 16 37 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.14 2.01 8.01 -2.91 -0.02 1.98 16 41 H 0.06 1.77 5.83 -2.39 -0.01 1.76 16 42 H 0.10 1.86 7.95 -2.39 -0.02 1.84 16 43 H 0.11 2.42 6.58 -2.39 -0.02 2.41 16 44 H 0.10 1.88 6.25 -2.38 -0.01 1.87 16 45 H 0.07 2.45 6.88 -2.39 -0.02 2.44 16 46 H 0.02 0.59 6.35 -2.39 -0.02 0.57 16 47 H 0.07 2.32 5.16 -2.38 -0.01 2.31 16 48 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 49 H -0.01 -0.77 8.14 -2.39 -0.02 -0.78 16 50 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 51 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -68.88 392.02 2.20 -66.68 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.90 Total: 21.35 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 5.28 Total: -20.75 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -5.96 Total: -92.34 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -68.88 2.20 -66.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295385734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.507 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds