Wall clock time and date at job start Tue Mar 31 2020 15:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46919 * 2 1 4 4 C 1.53003 * 109.47356 * 119.99763 * 2 1 3 5 5 C 1.53005 * 109.46914 * 60.00234 * 4 2 1 6 6 C 1.52999 * 109.47063 * 59.99929 * 5 4 2 7 7 C 1.52999 * 109.47405 * 300.00179 * 6 5 4 8 8 H 1.09000 * 109.46854 * 300.00121 * 7 6 5 9 9 C 1.50698 * 109.47506 * 180.02562 * 7 6 5 10 10 O 1.21279 * 120.00226 * 255.96275 * 9 7 6 11 11 N 1.34776 * 120.00320 * 75.95662 * 9 7 6 12 12 C 1.46510 * 119.99642 * 4.74189 * 11 9 7 13 13 C 1.50697 * 109.46998 * 83.73002 * 12 11 9 14 14 H 1.08004 * 120.00391 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99868 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99894 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47298 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46832 * 120.00072 * 17 15 13 20 20 H 1.48495 * 109.46900 * 239.99966 * 17 15 13 21 21 C 1.46490 * 120.00335 * 184.74163 * 11 9 7 22 22 C 1.50700 * 109.47201 * 90.00103 * 21 11 9 23 23 C 1.38229 * 119.61877 * 95.00520 * 22 21 11 24 24 C 1.38627 * 119.16294 * 179.97438 * 23 22 21 25 25 C 1.38676 * 118.41746 * 359.97438 * 24 23 22 26 26 C 1.38176 * 119.16629 * 0.02562 * 25 24 23 27 27 N 1.31853 * 119.61694 * 274.72342 * 22 21 11 28 28 C 1.52999 * 109.47168 * 240.00169 * 2 1 3 29 29 H 1.08996 * 109.47110 * 60.00356 * 1 2 3 30 30 H 1.08999 * 109.47211 * 299.99827 * 1 2 3 31 31 H 1.09004 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47038 * 60.00067 * 3 2 1 33 33 H 1.09000 * 109.47040 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46939 * 299.99749 * 3 2 1 35 35 H 1.09000 * 109.47189 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47295 * 300.00358 * 4 2 1 37 37 H 1.08994 * 109.47275 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.47040 * 299.99904 * 5 4 2 39 39 H 1.09000 * 109.47213 * 60.00081 * 6 5 4 40 40 H 1.09004 * 109.47017 * 179.97438 * 6 5 4 41 41 H 1.09001 * 109.46881 * 203.72956 * 12 11 9 42 42 H 1.08999 * 109.46974 * 323.73212 * 12 11 9 43 43 H 0.96996 * 120.00130 * 179.97438 * 16 15 13 44 44 H 1.09007 * 109.47112 * 209.99856 * 21 11 9 45 45 H 1.09001 * 109.47211 * 329.99562 * 21 11 9 46 46 H 1.08005 * 120.42128 * 359.94633 * 23 22 21 47 47 H 1.08002 * 120.79121 * 179.97438 * 24 23 22 48 48 H 1.08002 * 120.41447 * 179.97438 * 25 24 23 49 49 H 1.07994 * 119.62121 * 179.97438 * 26 25 24 50 50 H 1.08996 * 109.47533 * 59.99735 * 28 2 1 51 51 H 1.09009 * 109.47090 * 179.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1638 1.2493 6 6 2.0401 -2.8850 0.0000 7 6 1.5301 -2.1638 -1.2492 8 1 0.4401 -2.1638 -1.2492 9 6 2.0319 -2.8745 -2.4797 10 8 2.9459 -2.4026 -3.1222 11 7 1.4651 -4.0345 -2.8662 12 6 0.2950 -4.5517 -2.1521 13 6 -0.9516 -3.8986 -2.6912 14 1 -0.8795 -3.1708 -3.4859 15 6 -2.1842 -4.2303 -2.1699 16 7 -2.2719 -5.1161 -1.2018 17 14 -3.7293 -3.4202 -2.8376 18 1 -3.3622 -2.4667 -3.9152 19 1 -4.6362 -4.4606 -3.3857 20 1 -4.4178 -2.6900 -1.7432 21 6 2.0189 -4.7783 -4.0002 22 6 3.0631 -5.7455 -3.5049 23 6 2.7101 -7.0554 -3.2399 24 6 3.6783 -7.9371 -2.7852 25 6 4.9714 -7.4663 -2.6136 26 6 5.2498 -6.1434 -2.8991 27 7 4.3040 -5.3337 -3.3346 28 6 2.0400 -0.7212 -1.2493 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -0.2074 2.1393 37 1 1.8938 -2.6777 2.1390 38 1 0.4401 -2.1638 1.2493 39 1 3.1301 -2.8849 0.0000 40 1 1.6771 -3.9128 0.0003 41 1 0.2304 -5.6305 -2.2939 42 1 0.3907 -4.3299 -1.0892 43 1 -3.1390 -5.3492 -0.8348 44 1 1.2207 -5.3290 -4.4982 45 1 2.4737 -4.0817 -4.7044 46 1 1.6927 -7.3877 -3.3849 47 1 3.4315 -8.9662 -2.5696 48 1 5.7509 -8.1253 -2.2605 49 1 6.2542 -5.7689 -2.7678 50 1 1.6767 -0.2075 -2.1392 51 1 3.1301 -0.7208 -1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330442205.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:35 Heat of formation + Delta-G solvation = -42.970708 kcal Electronic energy + Delta-G solvation = -30080.791467 eV Core-core repulsion = 26364.189440 eV Total energy + Delta-G solvation = -3716.602027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61946 -40.90805 -39.36515 -36.80982 -34.74916 -34.28830 -33.36436 -32.72217 -31.75533 -29.39371 -28.15274 -27.79700 -27.13400 -25.16499 -24.41531 -24.09442 -22.83586 -22.29948 -19.84926 -19.31668 -18.65505 -17.89114 -17.54898 -17.28015 -16.94280 -16.52485 -16.31237 -15.95503 -15.80148 -15.50409 -15.15452 -14.80781 -14.53691 -14.41183 -14.21318 -14.02260 -13.90631 -13.73164 -13.50292 -13.37841 -13.04073 -12.91208 -12.80497 -12.73603 -12.64371 -12.53037 -12.36935 -12.29915 -12.03935 -11.86214 -11.80233 -11.68126 -11.31896 -11.01067 -10.91510 -10.80305 -10.62416 -10.42743 -10.33792 -9.91495 -9.43621 -8.18732 -6.32100 0.13974 0.40770 1.38979 1.43301 1.52985 1.84923 2.29633 2.45584 3.00738 3.11197 3.39686 3.62166 3.73918 3.78178 3.85832 4.01855 4.11129 4.18407 4.21869 4.25901 4.29509 4.41129 4.46106 4.51819 4.59412 4.60388 4.67810 4.71696 4.77883 4.85261 4.86585 4.89956 4.92533 5.00352 5.06195 5.10253 5.12314 5.18023 5.23855 5.25929 5.27687 5.29118 5.35962 5.42121 5.47036 5.53724 5.68398 5.69900 5.81406 5.86791 6.09438 6.58269 6.84127 7.14338 7.34605 7.47517 8.86645 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008121 B = 0.005629 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3447.011704 B = 4973.270735 C = 7295.378150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.100 4.100 5 C -0.113 4.113 6 C -0.096 4.096 7 C -0.099 4.099 8 H 0.094 0.906 9 C 0.517 3.483 10 O -0.583 6.583 11 N -0.595 5.595 12 C 0.254 3.746 13 C -0.544 4.544 14 H 0.047 0.953 15 C 0.031 3.969 16 N -0.913 5.913 17 Si 0.947 3.053 18 H -0.275 1.275 19 H -0.278 1.278 20 H -0.275 1.275 21 C 0.164 3.836 22 C 0.097 3.903 23 C -0.167 4.167 24 C -0.076 4.076 25 C -0.165 4.165 26 C 0.078 3.922 27 N -0.501 5.501 28 C -0.076 4.076 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.021 0.979 42 H 0.035 0.965 43 H 0.268 0.732 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.137 0.863 47 H 0.166 0.834 48 H 0.172 0.828 49 H 0.172 0.828 50 H 0.044 0.956 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.595 0.209 4.745 10.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 C -0.191 4.191 4 C -0.137 4.137 5 C -0.151 4.151 6 C -0.134 4.134 7 C -0.120 4.120 8 H 0.112 0.888 9 C 0.306 3.694 10 O -0.464 6.464 11 N -0.325 5.325 12 C 0.134 3.866 13 C -0.582 4.582 14 H 0.065 0.935 15 C -0.170 4.170 16 N -0.552 5.552 17 Si 0.773 3.227 18 H -0.200 1.200 19 H -0.203 1.203 20 H -0.201 1.201 21 C 0.040 3.960 22 C -0.042 4.042 23 C -0.187 4.187 24 C -0.102 4.102 25 C -0.184 4.184 26 C -0.079 4.079 27 N -0.211 5.211 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.090 0.910 46 H 0.155 0.845 47 H 0.184 0.816 48 H 0.189 0.811 49 H 0.189 0.811 50 H 0.063 0.937 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.113 1.225 4.325 11.067 hybrid contribution -1.371 -0.822 -0.605 1.709 sum 8.743 0.403 3.720 9.510 Atomic orbital electron populations 1.21973 0.94836 1.01622 1.01819 1.20542 0.95518 0.95856 0.94236 1.21799 1.01025 0.94072 1.02222 1.21571 1.00557 0.94390 0.97227 1.21531 1.00985 0.96265 0.96284 1.21372 0.99633 0.98560 0.93807 1.21290 1.02457 0.96021 0.92250 0.88792 1.21046 0.81305 0.80523 0.86494 1.90565 1.31668 1.66820 1.57357 1.48153 1.30401 1.21856 1.32124 1.19182 0.81068 0.94091 0.92309 1.21639 0.92080 1.24476 1.20019 0.93516 1.25501 1.01282 0.95313 0.94929 1.69998 1.25870 1.32846 1.26492 0.85665 0.79901 0.78612 0.78502 1.19995 1.20313 1.20087 1.20125 0.93716 0.93168 0.88979 1.21597 0.92011 0.93462 0.97085 1.22192 1.01736 0.94008 1.00768 1.21978 0.92573 1.01043 0.94618 1.22515 0.98304 0.97018 1.00578 1.23268 0.98842 0.91151 0.94689 1.67532 1.01589 1.39384 1.12579 1.21311 1.00013 0.92380 0.97735 0.93478 0.91056 0.93501 0.90946 0.92410 0.93066 0.91666 0.89915 0.90476 0.92072 0.92810 0.93192 0.96046 0.94708 0.92319 0.88539 0.90972 0.84474 0.81616 0.81089 0.81060 0.93672 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 7.78 71.98 0.56 -3.59 16 2 C -0.06 -1.67 0.77 -52.18 -0.04 -1.71 16 3 C -0.13 -2.98 8.47 71.98 0.61 -2.37 16 4 C -0.10 -2.45 4.73 30.60 0.14 -2.31 16 5 C -0.11 -3.25 5.65 30.60 0.17 -3.07 16 6 C -0.10 -3.40 4.92 30.59 0.15 -3.25 16 7 C -0.10 -3.92 1.41 -11.54 -0.02 -3.94 16 8 H 0.09 4.13 4.99 -2.39 -0.01 4.11 16 9 C 0.52 23.51 6.81 87.66 0.60 24.11 16 10 O -0.58 -28.92 15.56 -3.03 -0.05 -28.97 16 11 N -0.60 -26.74 2.46 -830.50 -2.04 -28.78 16 12 C 0.25 12.24 4.79 85.63 0.41 12.65 16 13 C -0.54 -28.31 8.57 25.60 0.22 -28.09 16 14 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 15 C 0.03 1.59 5.46 84.66 0.46 2.05 16 16 N -0.91 -48.97 13.29 21.45 0.28 -48.69 16 17 Si 0.95 41.59 29.54 68.60 2.03 43.62 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.16 6.72 5.72 85.63 0.49 7.21 16 22 C 0.10 3.57 6.36 42.55 0.27 3.84 16 23 C -0.17 -5.14 9.72 22.36 0.22 -4.92 16 24 C -0.08 -1.80 10.18 22.47 0.23 -1.57 16 25 C -0.16 -3.59 10.11 22.36 0.23 -3.36 16 26 C 0.08 2.18 11.18 84.67 0.95 3.12 16 27 N -0.50 -18.64 10.27 -183.89 -1.89 -20.53 16 28 C -0.08 -2.66 3.43 30.59 0.10 -2.55 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.56 4.81 -2.38 -0.01 1.55 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.90 6.43 -2.39 -0.02 1.88 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.05 1.96 6.13 -2.38 -0.01 1.95 16 41 H 0.02 1.07 8.02 -2.39 -0.02 1.06 16 42 H 0.04 1.75 4.83 -2.39 -0.01 1.74 16 43 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 44 H 0.10 3.69 7.97 -2.38 -0.02 3.67 16 45 H 0.07 3.14 7.36 -2.39 -0.02 3.12 16 46 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 47 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 48 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 49 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 50 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.06 2.06 7.93 -2.38 -0.02 2.04 16 Total: -1.00 -65.36 396.75 4.99 -60.37 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.90 Total: 30.73 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 5.75 Total: -7.76 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -3.65 Total: -98.00 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.05 Total: -28.97 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -65.36 4.99 -60.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330442205.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.402 kcal (2) G-P(sol) polarization free energy of solvation -65.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds