Wall clock time and date at job start Tue Mar 31 2020 15:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.53559 * 2 1 4 4 C 1.53122 * 109.50367 * 120.09750 * 2 1 3 5 5 C 1.53123 * 109.15713 * 177.59483 * 4 2 1 6 6 C 1.53037 * 109.27993 * 302.34437 * 5 4 2 7 7 N 1.46856 * 109.52011 * 59.18579 * 6 5 4 8 8 C 1.46894 * 110.99515 * 174.15837 * 7 6 5 9 9 C 1.52991 * 109.47384 * 66.04729 * 8 7 6 10 10 N 1.46506 * 109.47315 * 179.97438 * 9 8 7 11 11 C 1.34781 * 119.99769 * 180.27520 * 10 9 8 12 12 O 1.21580 * 120.00223 * 359.71803 * 11 10 9 13 13 C 1.47639 * 119.99456 * 179.72544 * 11 10 9 14 14 C 1.40015 * 119.89921 * 359.72592 * 13 11 10 15 15 C 1.36324 * 120.10807 * 179.71953 * 14 13 11 16 16 C 1.40884 * 119.88914 * 0.57437 * 15 14 13 17 17 C 1.41104 * 120.10134 * 179.67490 * 16 15 14 18 18 H 1.08010 * 119.99919 * 204.64837 * 17 16 15 19 19 C 1.40223 * 120.00208 * 24.65551 * 17 16 15 20 20 N 1.30648 * 119.99696 * 17.86070 * 19 17 16 21 21 Si 1.86802 * 120.00266 * 197.86404 * 19 17 16 22 22 H 1.48503 * 109.47208 * 89.99543 * 21 19 17 23 23 H 1.48498 * 109.47278 * 209.99872 * 21 19 17 24 24 H 1.48504 * 109.46881 * 329.99832 * 21 19 17 25 25 C 1.40891 * 119.79529 * 359.69927 * 16 15 14 26 26 C 1.36316 * 119.88971 * 359.97438 * 25 16 15 27 27 C 1.46851 * 111.19392 * 298.25442 * 7 6 5 28 28 H 1.09009 * 109.47010 * 299.89864 * 1 2 3 29 29 H 1.09001 * 109.46910 * 59.89966 * 1 2 3 30 30 H 1.08999 * 109.47324 * 179.89850 * 1 2 3 31 31 H 1.09000 * 109.47302 * 180.09561 * 3 2 1 32 32 H 1.08998 * 109.47175 * 300.10363 * 3 2 1 33 33 H 1.09007 * 109.46966 * 60.09900 * 3 2 1 34 34 H 1.08996 * 109.51920 * 57.69445 * 4 2 1 35 35 H 1.08993 * 109.52660 * 297.50065 * 4 2 1 36 36 H 1.09000 * 109.49805 * 182.40633 * 5 4 2 37 37 H 1.08995 * 109.53503 * 62.31083 * 5 4 2 38 38 H 1.08993 * 109.46711 * 299.16920 * 6 5 4 39 39 H 1.09000 * 109.45205 * 179.19015 * 6 5 4 40 40 H 1.09001 * 109.47453 * 306.04065 * 8 7 6 41 41 H 1.09009 * 109.46794 * 186.04453 * 8 7 6 42 42 H 1.09002 * 109.47740 * 59.99673 * 9 8 7 43 43 H 1.09006 * 109.47367 * 299.99370 * 9 8 7 44 44 H 0.96993 * 119.99787 * 359.97438 * 10 9 8 45 45 H 1.07998 * 119.94382 * 359.97438 * 14 13 11 46 46 H 1.07999 * 120.05219 * 180.24882 * 15 14 13 47 47 H 0.96999 * 119.99821 * 180.02562 * 20 19 17 48 48 H 1.07999 * 120.05808 * 179.97438 * 25 16 15 49 49 H 1.08008 * 119.94613 * 180.02562 * 26 25 16 50 50 H 1.09003 * 109.45603 * 181.75937 * 27 7 6 51 51 H 1.09004 * 109.45988 * 301.72674 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0412 -0.7238 1.2488 5 6 3.5712 -0.7719 1.2107 6 6 4.0229 -1.4730 -0.0725 7 7 3.5092 -0.7420 -1.2380 8 6 4.0372 -1.3057 -2.4874 9 6 3.4929 -2.7228 -2.6777 10 7 4.0190 -3.2848 -3.9242 11 6 3.6679 -4.5297 -4.3031 12 8 2.9186 -5.1882 -3.6080 13 6 4.1933 -5.0937 -5.5623 14 6 5.0516 -4.3314 -6.3639 15 6 5.5438 -4.8501 -7.5246 16 6 5.1779 -6.1510 -7.9230 17 6 5.6793 -6.6897 -9.1270 18 1 5.1343 -7.4698 -9.6378 19 6 6.8852 -6.2124 -9.6601 20 7 7.7143 -5.5435 -8.9038 21 14 7.3061 -6.5328 -11.4517 22 1 6.7843 -5.4228 -12.2889 23 1 8.7805 -6.6185 -11.6061 24 1 6.6879 -7.8119 -11.8842 25 6 4.3094 -6.9121 -7.1159 26 6 3.8276 -6.3873 -5.9537 27 6 2.0409 -0.7233 -1.2481 28 1 -0.3633 0.5123 0.8910 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3634 -1.0276 -0.0018 31 1 3.1316 1.4408 -0.0017 32 1 1.6773 1.9568 -0.8890 33 1 1.6803 1.9557 0.8909 34 1 1.6452 -1.7391 1.2689 35 1 1.7157 -0.1871 2.1398 36 1 3.9395 -1.3234 2.0757 37 1 3.9683 0.2430 1.2301 38 1 3.6375 -2.4924 -0.0844 39 1 5.1121 -1.4960 -0.1094 40 1 5.1257 -1.3379 -2.4402 41 1 3.7283 -0.6821 -3.3265 42 1 2.4044 -2.6907 -2.7251 43 1 3.8018 -3.3465 -1.8388 44 1 4.6166 -2.7594 -4.4789 45 1 5.3274 -3.3324 -6.0602 46 1 6.2090 -4.2628 -8.1402 47 1 8.5483 -5.2130 -9.2727 48 1 4.0258 -7.9096 -7.4175 49 1 3.1621 -6.9702 -5.3341 50 1 1.6905 -0.2021 -2.1390 51 1 1.6648 -1.7464 -1.2544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331009068.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:10 Heat of formation + Delta-G solvation = -38.503743 kcal Electronic energy + Delta-G solvation = -27784.680039 eV Core-core repulsion = 24068.271715 eV Total energy + Delta-G solvation = -3716.408325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.14491 -39.00710 -37.18120 -35.94582 -33.89226 -33.77568 -32.32830 -30.36536 -29.46523 -28.30457 -27.43889 -26.82942 -25.94279 -24.52275 -22.54657 -21.85104 -21.16127 -20.82191 -19.60557 -18.56173 -17.54510 -16.88751 -16.06169 -15.62243 -15.50650 -15.36377 -15.09971 -14.67237 -14.43945 -14.17009 -14.01137 -13.72258 -13.45155 -13.27876 -13.10405 -12.86516 -12.71878 -12.31459 -12.25162 -12.15882 -12.05894 -11.92780 -11.89454 -11.62805 -11.39503 -11.30945 -11.25386 -11.02667 -10.93185 -10.74430 -10.65750 -10.48380 -10.38873 -10.05779 -9.57850 -9.37637 -9.04377 -8.61998 -8.42658 -7.74051 -7.56242 -7.05403 -4.62112 2.21285 2.90550 2.94579 2.96994 3.01880 3.52443 3.72537 3.85246 3.98812 4.39361 4.54393 4.55343 4.59764 4.81468 4.94903 5.02315 5.06691 5.16226 5.26604 5.34915 5.44647 5.45659 5.50271 5.53882 5.55824 5.60923 5.68260 5.71116 5.80190 5.81662 5.85678 5.91330 5.98260 6.01678 6.02455 6.10931 6.16476 6.30064 6.31044 6.74789 6.79017 6.81095 6.89249 6.95095 7.04936 7.11731 7.41734 7.63243 7.77094 7.84241 8.05284 8.21542 8.38112 8.61316 8.73493 9.05564 9.86638 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.001980 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.947155 B =14138.707341 C =14508.331364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C -0.132 4.132 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.048 3.952 7 N -0.525 5.525 8 C 0.043 3.957 9 C 0.088 3.912 10 N -0.739 5.739 11 C 0.571 3.429 12 O -0.577 6.577 13 C -0.285 4.285 14 C -0.062 4.062 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.442 4.442 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.771 5.771 21 Si 0.914 3.086 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.239 4.239 26 C -0.022 4.022 27 C 0.059 3.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.121 0.879 47 H 0.287 0.713 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.075 0.925 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 13.079 13.362 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.063 4.063 3 C -0.189 4.189 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.080 4.080 7 N -0.248 5.248 8 C -0.085 4.085 9 C -0.038 4.038 10 N -0.393 5.393 11 C 0.366 3.634 12 O -0.459 6.459 13 C -0.289 4.289 14 C -0.082 4.082 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.470 4.470 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.395 5.395 21 Si 0.738 3.262 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.258 4.258 26 C -0.042 4.042 27 C -0.069 4.069 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.233 0.767 45 H 0.107 0.893 46 H 0.138 0.862 47 H 0.098 0.902 48 H 0.116 0.884 49 H 0.118 0.882 50 H 0.093 0.907 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.305 13.227 13.921 19.922 hybrid contribution 0.348 -0.750 -1.088 1.366 sum -4.957 12.477 12.833 18.572 Atomic orbital electron populations 1.21850 0.94498 1.01826 1.01833 1.20584 0.94870 0.96278 0.94578 1.21785 1.02329 0.94162 1.00661 1.21660 0.95683 1.00264 0.97288 1.21622 0.95792 1.01564 0.96543 1.22177 1.00041 0.95543 0.90263 1.62213 1.08225 1.52635 1.01719 1.22422 1.00608 0.92782 0.92697 1.21892 0.99087 0.94872 0.87924 1.45801 1.52058 1.17196 1.24265 1.18613 0.79288 0.79895 0.85613 1.90626 1.38507 1.60398 1.56383 1.18889 1.12854 0.98553 0.98625 1.20471 0.95774 0.96793 0.95123 1.20979 1.04545 0.96230 0.97986 1.17795 0.88233 0.90604 0.90896 1.19858 1.04262 1.17557 1.05276 0.89686 1.26108 0.95590 0.92885 1.00164 1.69745 1.07605 1.25257 1.36847 0.86198 0.78224 0.80344 0.81449 1.18914 1.20013 1.18276 1.20716 1.08114 0.99752 0.97237 1.20364 0.95540 0.93214 0.95032 1.22226 0.87313 0.99214 0.98151 0.92504 0.92511 0.92703 0.91157 0.93123 0.93596 0.92209 0.91889 0.91668 0.90863 0.94291 0.90634 0.89939 0.89932 0.92114 0.92258 0.76700 0.89320 0.86166 0.90215 0.88375 0.88163 0.90657 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.48 37.16 0.32 -0.78 16 2 C -0.06 -0.53 0.77 -154.43 -0.12 -0.65 16 3 C -0.13 -1.06 8.04 37.16 0.30 -0.76 16 4 C -0.11 -0.90 4.79 -26.60 -0.13 -1.03 16 5 C -0.12 -0.96 5.74 -26.65 -0.15 -1.11 16 6 C 0.05 0.46 5.05 -3.83 -0.02 0.44 16 7 N -0.52 -5.27 4.14 -234.67 -0.97 -6.24 16 8 C 0.04 0.47 5.47 -3.83 -0.02 0.45 16 9 C 0.09 1.25 4.97 -4.04 -0.02 1.23 16 10 N -0.74 -12.35 5.50 -61.31 -0.34 -12.69 16 11 C 0.57 12.30 7.76 -12.42 -0.10 12.20 16 12 O -0.58 -14.02 16.32 5.30 0.09 -13.93 16 13 C -0.28 -6.54 5.89 -104.73 -0.62 -7.15 16 14 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 15 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 16 C 0.13 3.26 5.58 -106.81 -0.60 2.66 16 17 C -0.44 -10.95 9.04 -37.75 -0.34 -11.29 16 18 H 0.09 2.02 7.91 -52.48 -0.42 1.60 16 19 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 20 N -0.77 -18.37 10.95 55.56 0.61 -17.76 16 21 Si 0.91 17.18 29.60 -169.99 -5.03 12.15 16 22 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 23 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 24 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 25 C -0.24 -5.80 9.73 -39.27 -0.38 -6.18 16 26 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 27 C 0.06 0.58 3.55 -3.83 -0.01 0.57 16 28 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.62 6.01 -51.93 -0.31 0.31 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.59 6.59 -51.93 -0.34 0.25 16 38 H 0.04 0.43 6.75 -51.93 -0.35 0.08 16 39 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 40 H 0.08 0.84 8.06 -51.93 -0.42 0.43 16 41 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 42 H 0.06 0.92 6.51 -51.93 -0.34 0.58 16 43 H 0.06 0.91 6.68 -51.93 -0.35 0.56 16 44 H 0.40 5.84 6.47 -40.82 -0.26 5.58 16 45 H 0.09 1.64 6.37 -52.49 -0.33 1.31 16 46 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 47 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 48 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 49 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 50 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 51 H 0.04 0.46 6.61 -51.93 -0.34 0.12 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -28.05 393.04 -11.19 -39.23 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -8.39 Total: 10.44 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -3.07 Total: -17.13 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.70 Total: -36.69 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.05 -11.19 -39.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331009068.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.730 kcal (2) G-P(sol) polarization free energy of solvation -28.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds