Wall clock time and date at job start Tue Mar 31 2020 15:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.53559 * 2 1 4 4 C 1.53122 * 109.50367 * 120.09750 * 2 1 3 5 5 C 1.53123 * 109.15713 * 177.59483 * 4 2 1 6 6 C 1.53037 * 109.27993 * 302.34437 * 5 4 2 7 7 N 1.46856 * 109.52011 * 59.18579 * 6 5 4 8 8 C 1.46894 * 110.99515 * 174.15837 * 7 6 5 9 9 C 1.52991 * 109.47384 * 66.04729 * 8 7 6 10 10 N 1.46506 * 109.47315 * 179.97438 * 9 8 7 11 11 C 1.34781 * 119.99769 * 180.27520 * 10 9 8 12 12 O 1.21580 * 120.00223 * 359.71803 * 11 10 9 13 13 C 1.47639 * 119.99456 * 179.72544 * 11 10 9 14 14 C 1.40015 * 119.89921 * 359.72592 * 13 11 10 15 15 C 1.36324 * 120.10807 * 179.71953 * 14 13 11 16 16 C 1.40884 * 119.88914 * 0.57437 * 15 14 13 17 17 C 1.41104 * 120.10134 * 179.67490 * 16 15 14 18 18 H 1.08010 * 119.99919 * 204.64837 * 17 16 15 19 19 C 1.40223 * 120.00208 * 24.65551 * 17 16 15 20 20 N 1.30648 * 119.99696 * 17.86070 * 19 17 16 21 21 Si 1.86802 * 120.00266 * 197.86404 * 19 17 16 22 22 H 1.48503 * 109.47208 * 89.99543 * 21 19 17 23 23 H 1.48498 * 109.47278 * 209.99872 * 21 19 17 24 24 H 1.48504 * 109.46881 * 329.99832 * 21 19 17 25 25 C 1.40891 * 119.79529 * 359.69927 * 16 15 14 26 26 C 1.36316 * 119.88971 * 359.97438 * 25 16 15 27 27 C 1.46851 * 111.19392 * 298.25442 * 7 6 5 28 28 H 1.09009 * 109.47010 * 299.89864 * 1 2 3 29 29 H 1.09001 * 109.46910 * 59.89966 * 1 2 3 30 30 H 1.08999 * 109.47324 * 179.89850 * 1 2 3 31 31 H 1.09000 * 109.47302 * 180.09561 * 3 2 1 32 32 H 1.08998 * 109.47175 * 300.10363 * 3 2 1 33 33 H 1.09007 * 109.46966 * 60.09900 * 3 2 1 34 34 H 1.08996 * 109.51920 * 57.69445 * 4 2 1 35 35 H 1.08993 * 109.52660 * 297.50065 * 4 2 1 36 36 H 1.09000 * 109.49805 * 182.40633 * 5 4 2 37 37 H 1.08995 * 109.53503 * 62.31083 * 5 4 2 38 38 H 1.08993 * 109.46711 * 299.16920 * 6 5 4 39 39 H 1.09000 * 109.45205 * 179.19015 * 6 5 4 40 40 H 1.09001 * 109.47453 * 306.04065 * 8 7 6 41 41 H 1.09009 * 109.46794 * 186.04453 * 8 7 6 42 42 H 1.09002 * 109.47740 * 59.99673 * 9 8 7 43 43 H 1.09006 * 109.47367 * 299.99370 * 9 8 7 44 44 H 0.96993 * 119.99787 * 359.97438 * 10 9 8 45 45 H 1.07998 * 119.94382 * 359.97438 * 14 13 11 46 46 H 1.07999 * 120.05219 * 180.24882 * 15 14 13 47 47 H 0.96999 * 119.99821 * 180.02562 * 20 19 17 48 48 H 1.07999 * 120.05808 * 179.97438 * 25 16 15 49 49 H 1.08008 * 119.94613 * 180.02562 * 26 25 16 50 50 H 1.09003 * 109.45603 * 181.75937 * 27 7 6 51 51 H 1.09004 * 109.45988 * 301.72674 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0412 -0.7238 1.2488 5 6 3.5712 -0.7719 1.2107 6 6 4.0229 -1.4730 -0.0725 7 7 3.5092 -0.7420 -1.2380 8 6 4.0372 -1.3057 -2.4874 9 6 3.4929 -2.7228 -2.6777 10 7 4.0190 -3.2848 -3.9242 11 6 3.6679 -4.5297 -4.3031 12 8 2.9186 -5.1882 -3.6080 13 6 4.1933 -5.0937 -5.5623 14 6 5.0516 -4.3314 -6.3639 15 6 5.5438 -4.8501 -7.5246 16 6 5.1779 -6.1510 -7.9230 17 6 5.6793 -6.6897 -9.1270 18 1 5.1343 -7.4698 -9.6378 19 6 6.8852 -6.2124 -9.6601 20 7 7.7143 -5.5435 -8.9038 21 14 7.3061 -6.5328 -11.4517 22 1 6.7843 -5.4228 -12.2889 23 1 8.7805 -6.6185 -11.6061 24 1 6.6879 -7.8119 -11.8842 25 6 4.3094 -6.9121 -7.1159 26 6 3.8276 -6.3873 -5.9537 27 6 2.0409 -0.7233 -1.2481 28 1 -0.3633 0.5123 0.8910 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3634 -1.0276 -0.0018 31 1 3.1316 1.4408 -0.0017 32 1 1.6773 1.9568 -0.8890 33 1 1.6803 1.9557 0.8909 34 1 1.6452 -1.7391 1.2689 35 1 1.7157 -0.1871 2.1398 36 1 3.9395 -1.3234 2.0757 37 1 3.9683 0.2430 1.2301 38 1 3.6375 -2.4924 -0.0844 39 1 5.1121 -1.4960 -0.1094 40 1 5.1257 -1.3379 -2.4402 41 1 3.7283 -0.6821 -3.3265 42 1 2.4044 -2.6907 -2.7251 43 1 3.8018 -3.3465 -1.8388 44 1 4.6166 -2.7594 -4.4789 45 1 5.3274 -3.3324 -6.0602 46 1 6.2090 -4.2628 -8.1402 47 1 8.5483 -5.2130 -9.2727 48 1 4.0258 -7.9096 -7.4175 49 1 3.1621 -6.9702 -5.3341 50 1 1.6905 -0.2021 -2.1390 51 1 1.6648 -1.7464 -1.2544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331009068.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:09 Heat of formation + Delta-G solvation = -53.326653 kcal Electronic energy + Delta-G solvation = -27785.322809 eV Core-core repulsion = 24068.271715 eV Total energy + Delta-G solvation = -3717.051094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.10892 -40.51489 -38.93578 -36.99467 -35.68635 -35.04013 -33.14114 -32.08691 -31.31667 -29.52041 -28.06876 -27.67737 -27.43899 -25.61776 -23.68362 -23.23993 -22.76327 -21.92324 -21.24820 -19.39807 -19.31061 -18.46677 -17.41873 -16.97801 -16.64255 -16.46256 -16.00724 -15.79257 -15.75260 -15.56006 -15.14728 -14.96700 -14.83866 -14.55528 -14.44155 -14.08869 -13.91729 -13.68723 -13.61346 -13.24141 -13.09365 -12.99533 -12.87012 -12.83515 -12.70288 -12.61601 -12.38880 -12.31572 -12.02959 -11.84028 -11.77822 -11.41642 -11.38319 -11.17791 -11.13695 -11.07668 -10.79315 -10.12277 -9.59054 -9.42532 -9.32434 -8.80551 -6.49555 0.41713 1.13565 1.38791 1.43260 1.53350 2.10080 2.16943 2.27809 2.76635 2.97216 3.67296 3.68967 3.80422 3.85028 3.95114 4.01944 4.20571 4.24066 4.30657 4.31811 4.39746 4.42824 4.49389 4.60387 4.63400 4.71532 4.74542 4.83975 4.88716 4.90871 4.95954 4.99104 5.02228 5.04643 5.09257 5.14232 5.14529 5.20474 5.28570 5.31292 5.36556 5.44448 5.49113 5.57503 5.66677 5.80380 5.92466 5.98023 6.03869 6.07410 6.21265 6.52570 6.66846 6.75807 6.87513 7.39678 8.14712 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.001980 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.947155 B =14138.707341 C =14508.331364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.126 4.126 4 C -0.111 4.111 5 C -0.113 4.113 6 C 0.045 3.955 7 N -0.519 5.519 8 C 0.053 3.947 9 C 0.093 3.907 10 N -0.720 5.720 11 C 0.570 3.430 12 O -0.610 6.610 13 C -0.295 4.295 14 C -0.052 4.052 15 C -0.198 4.198 16 C 0.100 3.900 17 C -0.471 4.471 18 H 0.085 0.915 19 C 0.037 3.963 20 N -0.796 5.796 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.265 1.265 24 H -0.258 1.258 25 C -0.253 4.253 26 C -0.034 4.034 27 C 0.058 3.942 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.021 0.979 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.410 0.590 45 H 0.126 0.874 46 H 0.116 0.884 47 H 0.298 0.702 48 H 0.103 0.897 49 H 0.100 0.900 50 H 0.075 0.925 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 15.074 13.424 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.062 4.062 3 C -0.183 4.183 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.083 4.083 7 N -0.241 5.241 8 C -0.076 4.076 9 C -0.032 4.032 10 N -0.373 5.373 11 C 0.363 3.637 12 O -0.495 6.495 13 C -0.299 4.299 14 C -0.071 4.071 15 C -0.217 4.217 16 C 0.097 3.903 17 C -0.498 4.498 18 H 0.103 0.897 19 C -0.182 4.182 20 N -0.420 5.420 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.189 1.189 24 H -0.182 1.182 25 C -0.273 4.273 26 C -0.053 4.053 27 C -0.069 4.069 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.248 0.752 45 H 0.144 0.856 46 H 0.134 0.866 47 H 0.109 0.891 48 H 0.122 0.878 49 H 0.118 0.882 50 H 0.094 0.906 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.517 15.265 14.008 21.205 hybrid contribution 0.088 -1.353 -1.013 1.692 sum -4.429 13.912 12.995 19.546 Atomic orbital electron populations 1.21837 0.93982 1.01528 1.02486 1.20597 0.95301 0.96496 0.93847 1.21724 1.01834 0.93641 1.01150 1.21662 0.95691 0.99801 0.97690 1.21607 0.95751 1.01769 0.95968 1.22241 1.00340 0.94790 0.90905 1.62297 1.08291 1.52020 1.01523 1.22415 1.01165 0.90439 0.93575 1.22013 0.98518 0.96665 0.86054 1.45633 1.51124 1.15631 1.24937 1.18472 0.79046 0.81138 0.85000 1.90608 1.40034 1.61679 1.57169 1.19153 1.12865 0.98450 0.99457 1.20734 0.94343 0.98133 0.93876 1.21026 1.05469 0.96106 0.99079 1.18155 0.88968 0.91478 0.91673 1.20118 1.05422 1.18502 1.05799 0.89699 1.26936 0.94736 0.92216 1.04297 1.69758 1.08163 1.25308 1.38737 0.85094 0.78325 0.80171 0.75584 1.18254 1.18891 1.18207 1.20847 1.08615 1.00202 0.97596 1.20508 0.95781 0.94039 0.95020 1.22251 0.87197 0.98344 0.99157 0.91357 0.92362 0.93490 0.91766 0.93230 0.92536 0.93299 0.90580 0.90713 0.90282 0.96047 0.90054 0.88747 0.88806 0.93200 0.93438 0.75228 0.85601 0.86644 0.89104 0.87840 0.88183 0.90639 0.96032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.48 71.98 0.61 -1.38 16 2 C -0.06 -0.96 0.77 -52.13 -0.04 -1.00 16 3 C -0.13 -1.76 8.04 71.98 0.58 -1.18 16 4 C -0.11 -1.64 4.79 30.68 0.15 -1.50 16 5 C -0.11 -1.65 5.74 30.65 0.18 -1.48 16 6 C 0.05 0.82 5.05 86.32 0.44 1.25 16 7 N -0.52 -9.67 4.14 -896.36 -3.71 -13.39 16 8 C 0.05 1.04 5.47 86.30 0.47 1.51 16 9 C 0.09 2.56 4.97 86.38 0.43 2.99 16 10 N -0.72 -23.21 5.50 -466.15 -2.57 -25.77 16 11 C 0.57 24.43 7.76 86.73 0.67 25.10 16 12 O -0.61 -30.03 16.32 -3.97 -0.06 -30.09 16 13 C -0.29 -13.56 5.89 -19.93 -0.12 -13.68 16 14 C -0.05 -2.26 9.47 22.25 0.21 -2.05 16 15 C -0.20 -9.69 8.63 22.47 0.19 -9.49 16 16 C 0.10 5.22 5.58 -21.28 -0.12 5.10 16 17 C -0.47 -23.72 9.04 23.46 0.21 -23.50 16 18 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 19 C 0.04 1.72 5.14 85.35 0.44 2.16 16 20 N -0.80 -37.66 10.95 21.87 0.24 -37.42 16 21 Si 0.99 34.48 29.60 68.60 2.03 36.51 16 22 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 24 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 25 C -0.25 -12.67 9.73 22.47 0.22 -12.45 16 26 C -0.03 -1.67 9.52 22.25 0.21 -1.46 16 27 C 0.06 1.11 3.55 86.32 0.31 1.42 16 28 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.98 6.01 -2.39 -0.01 0.97 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.09 6.59 -2.39 -0.02 1.08 16 38 H 0.02 0.47 6.75 -2.39 -0.02 0.45 16 39 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 40 H 0.09 1.68 8.06 -2.39 -0.02 1.66 16 41 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.05 1.51 6.51 -2.39 -0.02 1.50 16 43 H 0.05 1.45 6.68 -2.38 -0.02 1.43 16 44 H 0.41 11.12 6.47 -92.71 -0.60 10.52 16 45 H 0.13 4.38 6.37 -2.91 -0.02 4.36 16 46 H 0.12 5.70 6.16 -2.91 -0.02 5.69 16 47 H 0.30 12.46 8.29 -92.71 -0.77 11.69 16 48 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 49 H 0.10 4.78 7.63 -2.91 -0.02 4.76 16 50 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 51 H 0.02 0.49 6.61 -2.39 -0.02 0.48 16 Total: -1.00 -61.05 393.04 1.29 -59.76 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: 0.32 Total: 40.02 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 5.04 Total: -29.62 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -6.04 Total: -76.57 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.06 Total: -30.09 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -61.05 1.29 -59.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331009068.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.435 kcal (2) G-P(sol) polarization free energy of solvation -61.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds