Wall clock time and date at job start Tue Mar 31 2020 15:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.53564 * 2 1 4 4 C 1.53122 * 109.50100 * 239.90936 * 2 1 3 5 5 C 1.53123 * 109.15865 * 182.40623 * 4 2 1 6 6 C 1.53033 * 109.28007 * 57.64886 * 5 4 2 7 7 N 1.46843 * 109.52600 * 300.81945 * 6 5 4 8 8 C 1.46903 * 111.00417 * 185.83859 * 7 6 5 9 9 C 1.52997 * 109.47060 * 51.98845 * 8 7 6 10 10 N 1.46497 * 109.47390 * 176.15136 * 9 8 7 11 11 C 1.29979 * 120.00041 * 114.13718 * 10 9 8 12 12 O 1.35235 * 119.99962 * 172.56208 * 11 10 9 13 13 C 1.48025 * 119.99738 * 352.56623 * 11 10 9 14 14 C 1.39857 * 120.01831 * 317.40618 * 13 11 10 15 15 C 1.38356 * 120.36580 * 180.02562 * 14 13 11 16 16 C 1.37739 * 120.39990 * 0.25671 * 15 14 13 17 17 C 1.40755 * 120.02039 * 359.49700 * 16 15 14 18 18 C 1.41438 * 120.17657 * 180.25077 * 17 16 15 19 19 H 1.07994 * 120.00347 * 327.70173 * 18 17 16 20 20 C 1.39935 * 119.99584 * 147.69768 * 18 17 16 21 21 N 1.30831 * 119.99837 * 167.29800 * 20 18 17 22 22 Si 1.86800 * 120.00258 * 347.30534 * 20 18 17 23 23 H 1.48498 * 109.47389 * 88.15814 * 22 20 18 24 24 H 1.48501 * 109.46887 * 208.15876 * 22 20 18 25 25 H 1.48503 * 109.47134 * 328.15771 * 22 20 18 26 26 C 1.38904 * 120.01683 * 137.43411 * 13 11 10 27 27 C 1.46852 * 111.19539 * 61.74393 * 7 6 5 28 28 H 1.08997 * 109.46934 * 299.89950 * 1 2 3 29 29 H 1.09003 * 109.46799 * 59.89780 * 1 2 3 30 30 H 1.08990 * 109.47085 * 179.89610 * 1 2 3 31 31 H 1.08999 * 109.47260 * 180.09557 * 3 2 1 32 32 H 1.08993 * 109.47231 * 300.10632 * 3 2 1 33 33 H 1.09005 * 109.46192 * 60.10208 * 3 2 1 34 34 H 1.09001 * 109.52038 * 302.30511 * 4 2 1 35 35 H 1.08991 * 109.52739 * 62.49827 * 4 2 1 36 36 H 1.08996 * 109.50757 * 177.59398 * 5 4 2 37 37 H 1.09006 * 109.50023 * 297.67128 * 5 4 2 38 38 H 1.09001 * 109.46620 * 180.80637 * 6 5 4 39 39 H 1.08998 * 109.46361 * 60.83755 * 6 5 4 40 40 H 1.08998 * 109.46669 * 291.98852 * 8 7 6 41 41 H 1.08997 * 109.47144 * 171.99364 * 8 7 6 42 42 H 1.09007 * 109.46863 * 56.14896 * 9 8 7 43 43 H 1.09001 * 109.46966 * 296.15759 * 9 8 7 44 44 H 0.96701 * 113.99916 * 0.02562 * 12 11 10 45 45 H 1.07994 * 119.82066 * 0.02562 * 14 13 11 46 46 H 1.07997 * 119.80113 * 179.97438 * 15 14 13 47 47 H 1.08004 * 119.98977 * 179.72005 * 16 15 14 48 48 H 0.97004 * 119.99782 * 180.02562 * 21 20 18 49 49 H 1.08007 * 120.19787 * 359.95302 * 26 13 11 50 50 H 1.08994 * 109.46580 * 58.27320 * 27 7 6 51 51 H 1.08998 * 109.46155 * 178.24518 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4420 0.0000 4 6 2.0412 -0.7237 -1.2489 5 6 3.5712 -0.7718 -1.2109 6 6 4.0229 -1.4729 0.0722 7 7 3.5093 -0.7421 1.2377 8 6 4.0373 -1.3060 2.4873 9 6 5.5622 -1.3967 2.4016 10 7 6.0958 -1.8724 3.6803 11 6 6.6836 -3.0296 3.7491 12 8 7.3076 -3.4044 4.8888 13 6 6.6700 -3.9372 2.5798 14 6 5.4971 -4.1029 1.8363 15 6 5.4762 -4.9498 0.7424 16 6 6.6085 -5.6434 0.3762 17 6 7.7993 -5.4851 1.1096 18 6 8.9654 -6.1917 0.7333 19 1 8.8826 -7.1724 0.2887 20 6 10.2262 -5.6199 0.9369 21 7 11.3032 -6.3544 0.8261 22 14 10.3716 -3.8080 1.3673 23 1 10.2894 -3.6409 2.8406 24 1 11.6749 -3.2870 0.8821 25 1 9.2663 -3.0555 0.7214 26 6 7.8221 -4.6253 2.2208 27 6 2.0410 -0.7235 1.2479 28 1 -0.3633 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3633 -1.0276 -0.0019 31 1 3.1316 1.4408 -0.0017 32 1 1.6774 1.9568 -0.8890 33 1 1.6803 1.9556 0.8910 34 1 1.6452 -1.7390 -1.2691 35 1 1.7156 -0.1869 -2.1398 36 1 3.9395 -1.3232 -2.0759 37 1 3.9678 0.2433 -1.2305 38 1 5.1121 -1.4962 0.1093 39 1 3.6375 -2.4924 0.0840 40 1 3.6221 -2.3021 2.6403 41 1 3.7578 -0.6636 3.3224 42 1 5.9729 -0.4115 2.1804 43 1 5.8408 -2.0924 1.6101 44 1 7.2628 -2.7467 5.5963 45 1 4.6028 -3.5669 2.1175 46 1 4.5654 -5.0712 0.1749 47 1 6.5835 -6.3062 -0.4762 48 1 12.1772 -5.9580 0.9676 49 1 8.7300 -4.4999 2.7922 50 1 1.6648 -1.7464 1.2542 51 1 1.6906 -0.2023 2.1388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331279882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:07 Heat of formation + Delta-G solvation = -9.516880 kcal Electronic energy + Delta-G solvation = -29369.937244 eV Core-core repulsion = 25654.785884 eV Total energy + Delta-G solvation = -3715.151360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.92850 -39.04794 -37.32176 -36.02939 -34.15035 -33.45289 -32.14578 -30.53339 -30.16251 -28.47826 -27.36452 -26.54560 -25.32411 -24.38828 -22.72882 -22.33300 -21.51264 -20.73638 -19.41667 -18.51612 -17.48354 -17.06443 -16.56979 -15.64886 -15.20603 -15.02269 -14.88713 -14.81523 -14.48510 -14.34154 -14.12573 -13.83480 -13.43153 -13.36649 -13.24878 -12.76933 -12.68290 -12.43464 -12.30865 -12.20137 -12.07365 -11.97260 -11.77551 -11.54922 -11.42570 -11.21783 -11.04872 -10.91556 -10.82241 -10.58975 -10.50400 -10.30504 -10.24255 -10.06104 -9.88505 -9.26262 -9.04535 -8.79484 -8.22608 -7.85015 -7.73359 -7.01810 -4.61799 1.82611 2.45459 2.91552 3.07646 3.16582 3.21759 3.71584 3.88776 3.99716 4.36710 4.51218 4.68417 4.73723 4.93491 5.08006 5.20051 5.24960 5.28569 5.30217 5.39127 5.42722 5.49388 5.54872 5.59102 5.68404 5.71122 5.76507 5.78868 5.81921 5.88040 5.89268 5.96181 6.02500 6.03652 6.10361 6.14787 6.26296 6.28790 6.31455 6.37012 6.45626 6.49266 6.66755 6.96954 7.11066 7.11966 7.14559 7.32471 7.43955 7.61662 7.62727 7.88482 8.20672 8.32361 8.45503 8.66996 10.00665 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.003407 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.754611 B = 8216.680037 C = 8843.833855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.132 4.132 4 C -0.110 4.110 5 C -0.118 4.118 6 C 0.048 3.952 7 N -0.533 5.533 8 C 0.064 3.936 9 C 0.049 3.951 10 N -0.616 5.616 11 C 0.402 3.598 12 O -0.463 6.463 13 C -0.064 4.064 14 C -0.213 4.213 15 C -0.087 4.087 16 C -0.188 4.188 17 C 0.087 3.913 18 C -0.445 4.445 19 H 0.094 0.906 20 C 0.084 3.916 21 N -0.808 5.808 22 Si 0.907 3.093 23 H -0.264 1.264 24 H -0.289 1.289 25 H -0.248 1.248 26 C -0.191 4.191 27 C 0.068 3.932 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.396 0.604 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.287 0.713 49 H 0.113 0.887 50 H 0.031 0.969 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.985 11.863 -0.773 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 C -0.189 4.189 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.079 4.079 7 N -0.257 5.257 8 C -0.064 4.064 9 C -0.080 4.080 10 N -0.351 5.351 11 C 0.178 3.822 12 O -0.256 6.256 13 C -0.067 4.067 14 C -0.233 4.233 15 C -0.106 4.106 16 C -0.208 4.208 17 C 0.083 3.917 18 C -0.474 4.474 19 H 0.112 0.888 20 C -0.135 4.135 21 N -0.432 5.432 22 Si 0.734 3.266 23 H -0.190 1.190 24 H -0.216 1.216 25 H -0.172 1.172 26 C -0.211 4.211 27 C -0.060 4.060 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.250 0.750 45 H 0.121 0.879 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.097 0.903 49 H 0.130 0.870 50 H 0.049 0.951 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.577 12.427 -0.578 19.164 hybrid contribution -0.088 -0.225 0.154 0.287 sum -14.664 12.202 -0.423 19.081 Atomic orbital electron populations 1.21842 0.94714 1.01584 1.01717 1.20572 0.94580 0.96356 0.94734 1.21781 1.02583 0.94105 1.00471 1.21652 0.95990 1.00022 0.97075 1.21636 0.95409 1.01609 0.96953 1.22221 1.00867 0.95046 0.89802 1.61904 1.07436 1.54146 1.02259 1.22119 0.94771 0.97712 0.91789 1.22238 0.93670 1.01264 0.90828 1.71986 1.20659 1.15496 1.26998 1.22066 0.85598 0.89458 0.85126 1.85077 1.70833 1.47174 1.22554 1.18542 0.95921 0.98499 0.93722 1.20538 0.96111 1.06233 1.00442 1.20513 0.97104 0.96633 0.96324 1.21204 0.93968 1.04478 1.01126 1.17719 0.93721 0.90449 0.89769 1.19494 0.88587 1.04188 1.35083 0.88805 1.26115 0.95267 1.00674 0.91441 1.69643 0.99689 1.38057 1.35848 0.86421 0.77977 0.82363 0.79838 1.19034 1.21592 1.17194 1.21377 0.97226 1.02909 0.99612 1.22092 0.87547 0.98499 0.97883 0.92681 0.92532 0.92872 0.90988 0.93640 0.93269 0.92353 0.92023 0.91566 0.90980 0.89941 0.94543 0.94898 0.90527 0.90344 0.90627 0.75000 0.87914 0.88260 0.87676 0.90271 0.86955 0.95110 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.48 37.16 0.32 -0.82 16 2 C -0.06 -0.59 0.77 -154.42 -0.12 -0.71 16 3 C -0.13 -1.25 8.04 37.16 0.30 -0.95 16 4 C -0.11 -1.07 4.79 -26.60 -0.13 -1.19 16 5 C -0.12 -1.29 5.74 -26.65 -0.15 -1.45 16 6 C 0.05 0.63 5.04 -3.84 -0.02 0.61 16 7 N -0.53 -6.77 4.05 -234.68 -0.95 -7.72 16 8 C 0.06 0.91 5.04 -3.82 -0.02 0.89 16 9 C 0.05 0.81 4.82 -4.04 -0.02 0.79 16 10 N -0.62 -10.99 10.49 -59.21 -0.62 -11.61 16 11 C 0.40 7.75 7.69 -14.32 -0.11 7.64 16 12 O -0.46 -8.05 13.48 -17.40 -0.23 -8.29 16 13 C -0.06 -1.36 4.94 -105.03 -0.52 -1.88 16 14 C -0.21 -4.15 7.38 -38.93 -0.29 -4.44 16 15 C -0.09 -1.69 10.01 -39.72 -0.40 -2.09 16 16 C -0.19 -4.08 9.78 -38.81 -0.38 -4.46 16 17 C 0.09 2.10 5.09 -106.87 -0.54 1.56 16 18 C -0.44 -11.65 9.59 -37.73 -0.36 -12.01 16 19 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 20 C 0.08 2.16 5.46 -17.34 -0.09 2.07 16 21 N -0.81 -21.20 13.93 55.55 0.77 -20.43 16 22 Si 0.91 20.74 24.48 -169.99 -4.16 16.57 16 23 H -0.26 -5.99 6.45 56.52 0.36 -5.62 16 24 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.25 -5.79 6.96 56.52 0.39 -5.39 16 26 C -0.19 -4.51 6.80 -38.47 -0.26 -4.77 16 27 C 0.07 0.75 4.18 -3.83 -0.02 0.74 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.78 6.01 -51.93 -0.31 0.47 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.79 6.58 -51.93 -0.34 0.45 16 38 H 0.08 1.21 5.93 -51.93 -0.31 0.91 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.03 0.50 6.13 -51.93 -0.32 0.19 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 43 H 0.08 1.37 3.02 -51.93 -0.16 1.21 16 44 H 0.40 4.86 8.97 45.56 0.41 5.27 16 45 H 0.10 1.85 4.53 -52.49 -0.24 1.61 16 46 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 47 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 48 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 49 H 0.11 2.74 4.49 -52.48 -0.24 2.51 16 50 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -26.86 384.53 -9.66 -36.52 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.45 Total: 9.64 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.82 Total: -20.48 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.80 Total: -39.77 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.23 Total: -8.29 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.16 Total: 16.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -26.86 -9.66 -36.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331279882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.001 kcal (2) G-P(sol) polarization free energy of solvation -26.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds