Wall clock time and date at job start Tue Mar 31 2020 15:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.53564 * 2 1 4 4 C 1.53122 * 109.50100 * 239.90936 * 2 1 3 5 5 C 1.53123 * 109.15865 * 182.40623 * 4 2 1 6 6 C 1.53033 * 109.28007 * 57.64886 * 5 4 2 7 7 N 1.46843 * 109.52600 * 300.81945 * 6 5 4 8 8 C 1.46903 * 111.00417 * 185.83859 * 7 6 5 9 9 C 1.52997 * 109.47060 * 51.98845 * 8 7 6 10 10 N 1.46497 * 109.47390 * 176.15136 * 9 8 7 11 11 C 1.29979 * 120.00041 * 114.13718 * 10 9 8 12 12 O 1.35235 * 119.99962 * 172.56208 * 11 10 9 13 13 C 1.48025 * 119.99738 * 352.56623 * 11 10 9 14 14 C 1.39857 * 120.01831 * 317.40618 * 13 11 10 15 15 C 1.38356 * 120.36580 * 180.02562 * 14 13 11 16 16 C 1.37739 * 120.39990 * 0.25671 * 15 14 13 17 17 C 1.40755 * 120.02039 * 359.49700 * 16 15 14 18 18 C 1.41438 * 120.17657 * 180.25077 * 17 16 15 19 19 H 1.07994 * 120.00347 * 327.70173 * 18 17 16 20 20 C 1.39935 * 119.99584 * 147.69768 * 18 17 16 21 21 N 1.30831 * 119.99837 * 167.29800 * 20 18 17 22 22 Si 1.86800 * 120.00258 * 347.30534 * 20 18 17 23 23 H 1.48498 * 109.47389 * 88.15814 * 22 20 18 24 24 H 1.48501 * 109.46887 * 208.15876 * 22 20 18 25 25 H 1.48503 * 109.47134 * 328.15771 * 22 20 18 26 26 C 1.38904 * 120.01683 * 137.43411 * 13 11 10 27 27 C 1.46852 * 111.19539 * 61.74393 * 7 6 5 28 28 H 1.08997 * 109.46934 * 299.89950 * 1 2 3 29 29 H 1.09003 * 109.46799 * 59.89780 * 1 2 3 30 30 H 1.08990 * 109.47085 * 179.89610 * 1 2 3 31 31 H 1.08999 * 109.47260 * 180.09557 * 3 2 1 32 32 H 1.08993 * 109.47231 * 300.10632 * 3 2 1 33 33 H 1.09005 * 109.46192 * 60.10208 * 3 2 1 34 34 H 1.09001 * 109.52038 * 302.30511 * 4 2 1 35 35 H 1.08991 * 109.52739 * 62.49827 * 4 2 1 36 36 H 1.08996 * 109.50757 * 177.59398 * 5 4 2 37 37 H 1.09006 * 109.50023 * 297.67128 * 5 4 2 38 38 H 1.09001 * 109.46620 * 180.80637 * 6 5 4 39 39 H 1.08998 * 109.46361 * 60.83755 * 6 5 4 40 40 H 1.08998 * 109.46669 * 291.98852 * 8 7 6 41 41 H 1.08997 * 109.47144 * 171.99364 * 8 7 6 42 42 H 1.09007 * 109.46863 * 56.14896 * 9 8 7 43 43 H 1.09001 * 109.46966 * 296.15759 * 9 8 7 44 44 H 0.96701 * 113.99916 * 0.02562 * 12 11 10 45 45 H 1.07994 * 119.82066 * 0.02562 * 14 13 11 46 46 H 1.07997 * 119.80113 * 179.97438 * 15 14 13 47 47 H 1.08004 * 119.98977 * 179.72005 * 16 15 14 48 48 H 0.97004 * 119.99782 * 180.02562 * 21 20 18 49 49 H 1.08007 * 120.19787 * 359.95302 * 26 13 11 50 50 H 1.08994 * 109.46580 * 58.27320 * 27 7 6 51 51 H 1.08998 * 109.46155 * 178.24518 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4420 0.0000 4 6 2.0412 -0.7237 -1.2489 5 6 3.5712 -0.7718 -1.2109 6 6 4.0229 -1.4729 0.0722 7 7 3.5093 -0.7421 1.2377 8 6 4.0373 -1.3060 2.4873 9 6 5.5622 -1.3967 2.4016 10 7 6.0958 -1.8724 3.6803 11 6 6.6836 -3.0296 3.7491 12 8 7.3076 -3.4044 4.8888 13 6 6.6700 -3.9372 2.5798 14 6 5.4971 -4.1029 1.8363 15 6 5.4762 -4.9498 0.7424 16 6 6.6085 -5.6434 0.3762 17 6 7.7993 -5.4851 1.1096 18 6 8.9654 -6.1917 0.7333 19 1 8.8826 -7.1724 0.2887 20 6 10.2262 -5.6199 0.9369 21 7 11.3032 -6.3544 0.8261 22 14 10.3716 -3.8080 1.3673 23 1 10.2894 -3.6409 2.8406 24 1 11.6749 -3.2870 0.8821 25 1 9.2663 -3.0555 0.7214 26 6 7.8221 -4.6253 2.2208 27 6 2.0410 -0.7235 1.2479 28 1 -0.3633 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3633 -1.0276 -0.0019 31 1 3.1316 1.4408 -0.0017 32 1 1.6774 1.9568 -0.8890 33 1 1.6803 1.9556 0.8910 34 1 1.6452 -1.7390 -1.2691 35 1 1.7156 -0.1869 -2.1398 36 1 3.9395 -1.3232 -2.0759 37 1 3.9678 0.2433 -1.2305 38 1 5.1121 -1.4962 0.1093 39 1 3.6375 -2.4924 0.0840 40 1 3.6221 -2.3021 2.6403 41 1 3.7578 -0.6636 3.3224 42 1 5.9729 -0.4115 2.1804 43 1 5.8408 -2.0924 1.6101 44 1 7.2628 -2.7467 5.5963 45 1 4.6028 -3.5669 2.1175 46 1 4.5654 -5.0712 0.1749 47 1 6.5835 -6.3062 -0.4762 48 1 12.1772 -5.9580 0.9676 49 1 8.7300 -4.4999 2.7922 50 1 1.6648 -1.7464 1.2542 51 1 1.6906 -0.2023 2.1388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331279882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:06 Heat of formation + Delta-G solvation = -28.442540 kcal Electronic energy + Delta-G solvation = -29370.757923 eV Core-core repulsion = 25654.785884 eV Total energy + Delta-G solvation = -3715.972038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.05616 -40.36976 -38.90885 -37.21025 -35.63310 -35.00924 -33.04996 -32.32281 -31.76655 -29.72433 -28.05418 -27.39907 -27.14734 -25.56223 -24.07223 -23.47954 -23.17700 -21.93732 -20.90417 -19.35924 -19.27838 -18.49543 -18.08431 -16.88730 -16.73573 -16.53584 -16.02551 -15.89431 -15.73487 -15.53255 -15.21364 -15.13228 -15.01356 -14.60851 -14.42410 -14.32907 -13.92735 -13.82253 -13.50194 -13.46157 -13.35616 -12.92594 -12.77779 -12.74411 -12.62377 -12.54992 -12.43272 -12.27190 -12.14759 -11.91012 -11.77859 -11.72670 -11.37352 -11.16740 -11.08938 -11.04205 -10.47864 -10.29510 -9.56597 -9.45531 -9.24518 -8.92769 -6.57679 0.16762 0.69331 1.20185 1.23780 1.38119 1.47248 2.03126 2.38966 2.55239 2.86925 3.36813 3.58080 3.75280 3.85222 3.91836 4.05329 4.07612 4.18591 4.21069 4.31989 4.37779 4.48893 4.54033 4.58215 4.61756 4.64861 4.66031 4.74698 4.77803 4.84250 4.88400 4.91901 4.95126 4.99538 5.04492 5.07625 5.12232 5.17471 5.21746 5.22762 5.33422 5.35851 5.39894 5.48476 5.59786 5.68188 5.73056 5.78743 6.06454 6.12092 6.16676 6.25305 6.29151 6.59900 6.75229 6.94378 8.15820 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.003407 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.754611 B = 8216.680037 C = 8843.833855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 C -0.129 4.129 4 C -0.107 4.107 5 C -0.116 4.116 6 C 0.050 3.950 7 N -0.532 5.532 8 C 0.075 3.925 9 C 0.048 3.952 10 N -0.602 5.602 11 C 0.392 3.608 12 O -0.469 6.469 13 C -0.074 4.074 14 C -0.186 4.186 15 C -0.080 4.080 16 C -0.190 4.190 17 C 0.069 3.931 18 C -0.480 4.480 19 H 0.065 0.935 20 C 0.052 3.948 21 N -0.850 5.850 22 Si 0.955 3.045 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.257 1.257 26 C -0.207 4.207 27 C 0.067 3.933 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.030 0.970 40 H 0.026 0.974 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.418 0.582 45 H 0.125 0.875 46 H 0.139 0.861 47 H 0.115 0.885 48 H 0.293 0.707 49 H 0.100 0.900 50 H 0.028 0.972 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.103 14.148 -0.662 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.060 4.060 3 C -0.186 4.186 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.078 4.078 7 N -0.257 5.257 8 C -0.053 4.053 9 C -0.081 4.081 10 N -0.338 5.338 11 C 0.166 3.834 12 O -0.266 6.266 13 C -0.077 4.077 14 C -0.206 4.206 15 C -0.098 4.098 16 C -0.210 4.210 17 C 0.067 3.933 18 C -0.510 4.510 19 H 0.083 0.917 20 C -0.162 4.162 21 N -0.477 5.477 22 Si 0.780 3.220 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.181 1.181 26 C -0.227 4.227 27 C -0.061 4.061 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.044 0.956 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.275 0.725 45 H 0.142 0.858 46 H 0.156 0.844 47 H 0.133 0.867 48 H 0.104 0.896 49 H 0.118 0.882 50 H 0.046 0.954 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.706 14.726 -0.452 23.034 hybrid contribution 0.604 -0.839 0.162 1.046 sum -17.101 13.887 -0.291 22.032 Atomic orbital electron populations 1.21806 0.93312 1.01901 1.02464 1.20578 0.95630 0.96048 0.93773 1.21736 1.01527 0.94212 1.01110 1.21644 0.94818 1.00244 0.97767 1.21612 0.96503 1.01302 0.95908 1.22181 0.99643 0.95069 0.90920 1.61927 1.08646 1.53674 1.01435 1.21959 0.92937 0.97539 0.92854 1.22296 0.95331 1.00790 0.89718 1.72039 1.19725 1.14482 1.27541 1.21877 0.86738 0.89418 0.85335 1.85021 1.70448 1.48346 1.22771 1.18842 0.95581 0.98388 0.94866 1.20910 0.96112 1.04443 0.99173 1.20892 0.97687 0.95127 0.96130 1.21445 0.93841 1.04570 1.01129 1.17840 0.94067 0.90954 0.90482 1.19469 0.90080 1.03959 1.37461 0.91669 1.26632 0.94897 1.03343 0.91374 1.69672 1.00236 1.39338 1.38450 0.85689 0.78020 0.78858 0.79458 1.18949 1.20127 1.18136 1.21333 0.97797 1.03962 0.99643 1.22184 0.86182 0.98665 0.99082 0.92194 0.91592 0.92780 0.92523 0.92584 0.93101 0.92436 0.90721 0.91201 0.91072 0.91923 0.95203 0.95565 0.90000 0.90164 0.92120 0.72470 0.85753 0.84350 0.86743 0.89606 0.88236 0.95408 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.48 71.98 0.61 -1.14 16 2 C -0.06 -0.96 0.77 -52.13 -0.04 -1.00 16 3 C -0.13 -2.08 8.04 71.99 0.58 -1.50 16 4 C -0.11 -1.76 4.79 30.68 0.15 -1.62 16 5 C -0.12 -2.27 5.74 30.65 0.18 -2.09 16 6 C 0.05 1.19 5.04 86.33 0.43 1.62 16 7 N -0.53 -12.24 4.05 -896.39 -3.63 -15.87 16 8 C 0.08 1.95 5.04 86.30 0.44 2.39 16 9 C 0.05 1.48 4.82 86.38 0.42 1.90 16 10 N -0.60 -20.14 10.49 -455.49 -4.78 -24.92 16 11 C 0.39 14.41 7.69 87.57 0.67 15.09 16 12 O -0.47 -15.58 13.48 -85.18 -1.15 -16.73 16 13 C -0.07 -3.05 4.94 -20.13 -0.10 -3.15 16 14 C -0.19 -6.81 7.38 22.69 0.17 -6.64 16 15 C -0.08 -2.90 10.01 22.18 0.22 -2.68 16 16 C -0.19 -8.12 9.78 22.77 0.22 -7.90 16 17 C 0.07 3.42 5.09 -21.32 -0.11 3.31 16 18 C -0.48 -26.37 9.59 23.47 0.23 -26.14 16 19 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 20 C 0.05 2.78 5.46 85.25 0.47 3.25 16 21 N -0.85 -46.66 13.93 21.82 0.30 -46.36 16 22 Si 0.95 43.80 24.48 68.60 1.68 45.48 16 23 H -0.26 -11.89 6.45 99.48 0.64 -11.25 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -11.98 6.96 99.48 0.69 -11.29 16 26 C -0.21 -9.81 6.80 22.99 0.16 -9.65 16 27 C 0.07 1.29 4.18 86.32 0.36 1.65 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 1.10 6.01 -2.39 -0.01 1.08 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.42 6.58 -2.38 -0.02 1.40 16 38 H 0.06 1.75 5.93 -2.39 -0.01 1.73 16 39 H 0.03 0.74 8.14 -2.39 -0.02 0.73 16 40 H 0.03 0.72 6.13 -2.39 -0.01 0.71 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 42 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.06 2.08 3.02 -2.39 -0.01 2.08 16 44 H 0.42 9.38 8.97 -74.06 -0.66 8.71 16 45 H 0.12 4.06 4.53 -2.91 -0.01 4.05 16 46 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 47 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 48 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 49 H 0.10 4.94 4.49 -2.91 -0.01 4.93 16 50 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 Total: -1.00 -59.10 384.53 -2.33 -61.43 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.19 Total: 31.27 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 5.04 Total: -34.32 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -8.10 Total: -87.14 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -1.15 Total: -16.73 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.68 Total: 45.48 kcal Total: -59.10 -2.33 -61.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331279882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.987 kcal (2) G-P(sol) polarization free energy of solvation -59.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds