Wall clock time and date at job start Tue Mar 31 2020 16:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.57662 * 2 1 4 4 C 1.53120 * 109.51826 * 120.15896 * 2 1 3 5 5 C 1.53038 * 109.27424 * 177.55749 * 4 2 1 6 6 N 1.46848 * 109.52901 * 300.82022 * 5 4 2 7 7 C 1.46896 * 111.00297 * 185.84171 * 6 5 4 8 8 C 1.50697 * 109.47143 * 169.99929 * 7 6 5 9 9 O 1.21290 * 119.99955 * 3.39352 * 8 7 6 10 10 N 1.34775 * 120.00326 * 183.39528 * 8 7 6 11 11 C 1.46502 * 119.99625 * 5.19655 * 10 8 7 12 12 C 1.50705 * 109.47098 * 250.15808 * 11 10 8 13 13 H 1.08001 * 119.99301 * 234.25536 * 12 11 10 14 14 C 1.37874 * 119.99802 * 54.25894 * 12 11 10 15 15 N 1.31509 * 120.00157 * 4.66953 * 14 12 11 16 16 Si 1.86803 * 119.99710 * 184.66857 * 14 12 11 17 17 H 1.48505 * 109.46917 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46779 * 119.99562 * 16 14 12 19 19 H 1.48494 * 109.47342 * 239.99862 * 16 14 12 20 20 C 1.39925 * 120.00066 * 185.19943 * 10 8 7 21 21 C 1.38871 * 120.06598 * 187.85894 * 20 10 8 22 22 C 1.38121 * 119.92491 * 179.76729 * 21 20 10 23 23 C 1.38272 * 120.07147 * 0.48185 * 22 21 20 24 24 C 1.38286 * 120.14060 * 359.77427 * 23 22 21 25 25 C 1.38109 * 120.07280 * 359.97438 * 24 23 22 26 26 C 1.46852 * 111.19463 * 61.74054 * 6 5 4 27 27 C 1.53042 * 109.52340 * 298.26002 * 26 6 5 28 28 H 1.08996 * 109.46863 * 299.84307 * 1 2 3 29 29 H 1.08997 * 109.46860 * 59.84497 * 1 2 3 30 30 H 1.08996 * 109.46927 * 179.83950 * 1 2 3 31 31 H 1.08994 * 109.47022 * 180.15867 * 3 2 1 32 32 H 1.09006 * 109.46675 * 300.15900 * 3 2 1 33 33 H 1.08998 * 109.46924 * 60.15216 * 3 2 1 34 34 H 1.08995 * 109.50679 * 57.61810 * 4 2 1 35 35 H 1.08993 * 109.53601 * 297.51621 * 4 2 1 36 36 H 1.09003 * 109.46085 * 180.80422 * 5 4 2 37 37 H 1.09006 * 109.45380 * 60.83503 * 5 4 2 38 38 H 1.08997 * 109.47334 * 50.00081 * 7 6 5 39 39 H 1.08996 * 109.46801 * 289.99832 * 7 6 5 40 40 H 1.08999 * 109.46790 * 130.15627 * 11 10 8 41 41 H 1.08999 * 109.47043 * 10.15919 * 11 10 8 42 42 H 0.96999 * 120.00199 * 175.00411 * 15 14 12 43 43 H 1.07998 * 120.03784 * 359.97438 * 21 20 10 44 44 H 1.08000 * 119.96035 * 180.25228 * 22 21 20 45 45 H 1.07997 * 119.93200 * 179.74290 * 23 22 21 46 46 H 1.08003 * 119.96094 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.03618 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.45846 * 58.27665 * 26 6 5 49 49 H 1.09001 * 109.45785 * 178.24650 * 26 6 5 50 50 H 1.09003 * 109.50180 * 299.23973 * 27 26 6 51 51 H 1.08994 * 109.53497 * 179.14203 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0427 1.4415 0.0000 4 6 2.0416 -0.7251 1.2479 5 6 3.5708 -0.7752 1.2117 6 7 4.0103 -1.4790 0.0001 7 6 5.4671 -1.6679 0.0001 8 6 5.8530 -2.5979 -1.1210 9 8 5.0067 -3.0093 -1.8863 10 7 7.1386 -2.9727 -1.2735 11 6 8.1414 -2.5690 -0.2846 12 6 9.0674 -1.5491 -0.8956 13 1 10.1349 -1.7122 -0.8817 14 6 8.5517 -0.4079 -1.4723 15 7 7.2609 -0.1645 -1.4085 16 14 9.6865 0.7926 -2.3444 17 1 11.0829 0.2916 -2.2771 18 1 9.2748 0.9197 -3.7655 19 1 9.6041 2.1203 -1.6844 20 6 7.5156 -3.7472 -2.3762 21 6 8.7995 -4.2709 -2.4522 22 6 9.1670 -5.0390 -3.5397 23 6 8.2613 -5.2784 -4.5567 24 6 6.9837 -4.7538 -4.4865 25 6 6.6083 -3.9893 -3.3993 26 6 3.5709 -0.7752 -1.2116 27 6 2.0417 -0.7251 -1.2478 28 1 -0.3633 0.5114 0.8914 29 1 -0.3633 0.5162 -0.8886 30 1 -0.3633 -1.0276 -0.0029 31 1 3.1326 1.4395 -0.0028 32 1 1.6779 1.9568 -0.8886 33 1 1.6825 1.9552 0.8913 34 1 1.6446 -1.7400 1.2675 35 1 1.7161 -0.1896 2.1397 36 1 3.9377 -1.3035 2.0917 37 1 3.9673 0.2401 1.2060 38 1 5.7776 -2.0982 0.9522 39 1 5.9582 -0.7052 -0.1410 40 1 8.7161 -3.4412 0.0268 41 1 7.6428 -2.1343 0.5817 42 1 6.9076 0.6719 -1.7498 43 1 9.5088 -4.0806 -1.6603 44 1 10.1641 -5.4500 -3.5975 45 1 8.5524 -5.8758 -5.4080 46 1 6.2787 -4.9423 -5.2827 47 1 5.6106 -3.5796 -3.3452 48 1 3.9675 0.2400 -1.2058 49 1 3.9379 -1.3035 -2.0916 50 1 1.6447 -1.7401 -1.2674 51 1 1.7156 -0.1895 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339253823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:03 Heat of formation + Delta-G solvation = 7.159312 kcal Electronic energy + Delta-G solvation = -30277.571562 eV Core-core repulsion = 26563.143336 eV Total energy + Delta-G solvation = -3714.428226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.96267 -39.09506 -37.37275 -35.09267 -34.57359 -32.45597 -30.45762 -30.09705 -29.71773 -28.50511 -27.40117 -27.20388 -25.10424 -23.28012 -22.78562 -22.01445 -21.32820 -20.84064 -18.60616 -18.00247 -17.21366 -16.29805 -15.82889 -15.30101 -15.12761 -14.93199 -14.60887 -14.46275 -14.17250 -13.95927 -13.80313 -13.46725 -13.35601 -12.95428 -12.59587 -12.43556 -12.24838 -12.17731 -12.12912 -11.80577 -11.67241 -11.59049 -11.49061 -11.20504 -11.19574 -11.01922 -11.00383 -10.75112 -10.72036 -10.35486 -10.28668 -10.14798 -9.95077 -9.84046 -9.68456 -9.00857 -8.80438 -8.26039 -8.07655 -7.52966 -6.77337 -6.26278 -4.51346 2.19369 2.26256 3.11521 3.23365 3.25189 3.77233 4.00159 4.17078 4.61631 4.81709 4.88426 4.98263 5.00769 5.04825 5.50815 5.55807 5.61868 5.64744 5.65587 5.74207 5.76693 5.84846 5.88919 5.91255 5.94088 6.00381 6.04397 6.09176 6.16585 6.20712 6.30308 6.35436 6.38447 6.39195 6.42982 6.46170 6.55234 6.58854 6.73207 6.81266 6.82618 6.90632 7.02728 7.20490 7.28466 7.38499 7.48526 7.63498 7.71289 7.78877 7.84153 8.14668 8.50371 8.65946 9.21316 9.36676 10.63360 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.004400 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.315435 B = 6361.969520 C = 7605.389429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.101 4.101 5 C 0.057 3.943 6 N -0.526 5.526 7 C 0.020 3.980 8 C 0.551 3.449 9 O -0.548 6.548 10 N -0.523 5.523 11 C 0.217 3.783 12 C -0.532 4.532 13 H 0.066 0.934 14 C 0.079 3.921 15 N -0.880 5.880 16 Si 0.901 3.099 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.197 3.803 21 C -0.152 4.152 22 C -0.108 4.108 23 C -0.174 4.174 24 C -0.109 4.109 25 C -0.178 4.178 26 C 0.058 3.942 27 C -0.101 4.101 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.032 0.968 41 H 0.050 0.950 42 H 0.267 0.733 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.171 0.829 48 H 0.028 0.972 49 H 0.094 0.906 50 H 0.067 0.933 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -0.348 3.008 7.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.139 4.139 5 C -0.071 4.071 6 N -0.251 5.251 7 C -0.110 4.110 8 C 0.343 3.657 9 O -0.429 6.429 10 N -0.242 5.242 11 C 0.098 3.902 12 C -0.570 4.570 13 H 0.084 0.916 14 C -0.124 4.124 15 N -0.518 5.518 16 Si 0.728 3.272 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.099 3.901 21 C -0.173 4.173 22 C -0.126 4.126 23 C -0.193 4.193 24 C -0.127 4.127 25 C -0.197 4.197 26 C -0.069 4.069 27 C -0.139 4.139 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.160 0.840 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.143 0.857 44 H 0.129 0.871 45 H 0.123 0.877 46 H 0.127 0.873 47 H 0.188 0.812 48 H 0.046 0.954 49 H 0.112 0.888 50 H 0.085 0.915 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.714 -0.846 2.641 8.197 hybrid contribution 1.196 1.603 -0.535 2.071 sum -6.518 0.758 2.106 6.892 Atomic orbital electron populations 1.21840 0.95134 1.01459 1.01091 1.20601 0.94738 0.95265 0.96195 1.21963 1.01801 0.95458 1.00916 1.21600 0.95255 1.00518 0.96515 1.22030 0.95137 0.96655 0.93287 1.61600 1.12622 1.49270 1.01599 1.22789 0.87901 1.04047 0.96213 1.20349 0.80802 0.78827 0.85690 1.90219 1.50384 1.56208 1.46117 1.46276 1.09011 1.46412 1.22468 1.19592 0.87830 0.94439 0.88303 1.21497 0.93604 1.03842 1.38065 0.91565 1.24964 0.95060 0.97720 0.94658 1.69412 1.11706 1.24799 1.45868 0.86384 0.80903 0.80259 0.79641 1.19537 1.20765 1.20806 1.17984 0.93369 0.90914 0.87803 1.20845 0.95751 1.00543 1.00113 1.20759 0.98627 0.98921 0.94322 1.20839 0.94715 1.04289 0.99499 1.20972 0.95769 0.98290 0.97704 1.22515 1.03452 1.00988 0.92770 1.22152 0.93948 0.96358 0.94469 1.21619 0.96126 1.00228 0.95942 0.93148 0.93027 0.92774 0.91990 0.93102 0.93246 0.91411 0.92266 0.91581 0.94968 0.90786 0.84036 0.94970 0.93157 0.92330 0.85696 0.87124 0.87668 0.87289 0.81226 0.95398 0.88784 0.91475 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.49 37.16 0.32 -1.18 16 2 C -0.07 -0.87 0.77 -154.38 -0.12 -0.99 16 3 C -0.14 -1.81 7.90 37.16 0.29 -1.52 16 4 C -0.10 -1.32 4.88 -26.65 -0.13 -1.45 16 5 C 0.06 0.87 5.21 -3.83 -0.02 0.85 16 6 N -0.53 -9.63 4.42 -236.11 -1.04 -10.68 16 7 C 0.02 0.40 3.74 -4.98 -0.02 0.38 16 8 C 0.55 12.55 6.22 -10.99 -0.07 12.48 16 9 O -0.55 -13.15 10.67 5.55 0.06 -13.09 16 10 N -0.52 -11.96 2.32 -114.74 -0.27 -12.22 16 11 C 0.22 4.79 5.04 -5.19 -0.03 4.76 16 12 C -0.53 -12.72 8.37 -34.44 -0.29 -13.01 16 13 H 0.07 1.58 7.82 -52.49 -0.41 1.17 16 14 C 0.08 1.93 5.33 -17.82 -0.10 1.83 16 15 N -0.88 -21.37 8.31 55.43 0.46 -20.91 16 16 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 C 0.20 4.46 6.28 -83.69 -0.53 3.94 16 21 C -0.15 -3.13 8.88 -39.39 -0.35 -3.48 16 22 C -0.11 -1.96 10.04 -39.61 -0.40 -2.35 16 23 C -0.17 -3.09 10.04 -39.55 -0.40 -3.48 16 24 C -0.11 -2.08 10.04 -39.61 -0.40 -2.47 16 25 C -0.18 -3.93 8.97 -39.39 -0.35 -4.28 16 26 C 0.06 1.07 4.86 -3.83 -0.02 1.05 16 27 C -0.10 -1.53 4.88 -26.65 -0.13 -1.66 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.88 4.92 -51.93 -0.26 0.63 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 37 H 0.03 0.50 6.51 -51.93 -0.34 0.16 16 38 H 0.07 1.42 7.03 -51.93 -0.37 1.06 16 39 H 0.14 3.14 4.87 -51.93 -0.25 2.89 16 40 H 0.03 0.66 7.06 -51.93 -0.37 0.29 16 41 H 0.05 1.09 5.81 -51.93 -0.30 0.79 16 42 H 0.27 6.39 8.32 -40.82 -0.34 6.05 16 43 H 0.13 2.51 6.14 -52.49 -0.32 2.19 16 44 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 47 H 0.17 4.03 4.73 -55.16 -0.26 3.77 16 48 H 0.03 0.53 6.51 -51.93 -0.34 0.19 16 49 H 0.09 2.03 5.66 -51.93 -0.29 1.73 16 50 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -25.71 377.39 -10.98 -36.69 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -8.13 Total: 10.29 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -2.73 Total: -10.59 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.85 Total: -43.82 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.06 Total: -13.09 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -25.71 -10.98 -36.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339253823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.848 kcal (2) G-P(sol) polarization free energy of solvation -25.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds