Wall clock time and date at job start Tue Mar 31 2020 16:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.57662 * 2 1 4 4 C 1.53120 * 109.51826 * 120.15896 * 2 1 3 5 5 C 1.53038 * 109.27424 * 177.55749 * 4 2 1 6 6 N 1.46848 * 109.52901 * 300.82022 * 5 4 2 7 7 C 1.46896 * 111.00297 * 185.84171 * 6 5 4 8 8 C 1.50697 * 109.47143 * 169.99929 * 7 6 5 9 9 O 1.21290 * 119.99955 * 3.39352 * 8 7 6 10 10 N 1.34775 * 120.00326 * 183.39528 * 8 7 6 11 11 C 1.46502 * 119.99625 * 5.19655 * 10 8 7 12 12 C 1.50705 * 109.47098 * 250.15808 * 11 10 8 13 13 H 1.08001 * 119.99301 * 234.25536 * 12 11 10 14 14 C 1.37874 * 119.99802 * 54.25894 * 12 11 10 15 15 N 1.31509 * 120.00157 * 4.66953 * 14 12 11 16 16 Si 1.86803 * 119.99710 * 184.66857 * 14 12 11 17 17 H 1.48505 * 109.46917 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46779 * 119.99562 * 16 14 12 19 19 H 1.48494 * 109.47342 * 239.99862 * 16 14 12 20 20 C 1.39925 * 120.00066 * 185.19943 * 10 8 7 21 21 C 1.38871 * 120.06598 * 187.85894 * 20 10 8 22 22 C 1.38121 * 119.92491 * 179.76729 * 21 20 10 23 23 C 1.38272 * 120.07147 * 0.48185 * 22 21 20 24 24 C 1.38286 * 120.14060 * 359.77427 * 23 22 21 25 25 C 1.38109 * 120.07280 * 359.97438 * 24 23 22 26 26 C 1.46852 * 111.19463 * 61.74054 * 6 5 4 27 27 C 1.53042 * 109.52340 * 298.26002 * 26 6 5 28 28 H 1.08996 * 109.46863 * 299.84307 * 1 2 3 29 29 H 1.08997 * 109.46860 * 59.84497 * 1 2 3 30 30 H 1.08996 * 109.46927 * 179.83950 * 1 2 3 31 31 H 1.08994 * 109.47022 * 180.15867 * 3 2 1 32 32 H 1.09006 * 109.46675 * 300.15900 * 3 2 1 33 33 H 1.08998 * 109.46924 * 60.15216 * 3 2 1 34 34 H 1.08995 * 109.50679 * 57.61810 * 4 2 1 35 35 H 1.08993 * 109.53601 * 297.51621 * 4 2 1 36 36 H 1.09003 * 109.46085 * 180.80422 * 5 4 2 37 37 H 1.09006 * 109.45380 * 60.83503 * 5 4 2 38 38 H 1.08997 * 109.47334 * 50.00081 * 7 6 5 39 39 H 1.08996 * 109.46801 * 289.99832 * 7 6 5 40 40 H 1.08999 * 109.46790 * 130.15627 * 11 10 8 41 41 H 1.08999 * 109.47043 * 10.15919 * 11 10 8 42 42 H 0.96999 * 120.00199 * 175.00411 * 15 14 12 43 43 H 1.07998 * 120.03784 * 359.97438 * 21 20 10 44 44 H 1.08000 * 119.96035 * 180.25228 * 22 21 20 45 45 H 1.07997 * 119.93200 * 179.74290 * 23 22 21 46 46 H 1.08003 * 119.96094 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.03618 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.45846 * 58.27665 * 26 6 5 49 49 H 1.09001 * 109.45785 * 178.24650 * 26 6 5 50 50 H 1.09003 * 109.50180 * 299.23973 * 27 26 6 51 51 H 1.08994 * 109.53497 * 179.14203 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0427 1.4415 0.0000 4 6 2.0416 -0.7251 1.2479 5 6 3.5708 -0.7752 1.2117 6 7 4.0103 -1.4790 0.0001 7 6 5.4671 -1.6679 0.0001 8 6 5.8530 -2.5979 -1.1210 9 8 5.0067 -3.0093 -1.8863 10 7 7.1386 -2.9727 -1.2735 11 6 8.1414 -2.5690 -0.2846 12 6 9.0674 -1.5491 -0.8956 13 1 10.1349 -1.7122 -0.8817 14 6 8.5517 -0.4079 -1.4723 15 7 7.2609 -0.1645 -1.4085 16 14 9.6865 0.7926 -2.3444 17 1 11.0829 0.2916 -2.2771 18 1 9.2748 0.9197 -3.7655 19 1 9.6041 2.1203 -1.6844 20 6 7.5156 -3.7472 -2.3762 21 6 8.7995 -4.2709 -2.4522 22 6 9.1670 -5.0390 -3.5397 23 6 8.2613 -5.2784 -4.5567 24 6 6.9837 -4.7538 -4.4865 25 6 6.6083 -3.9893 -3.3993 26 6 3.5709 -0.7752 -1.2116 27 6 2.0417 -0.7251 -1.2478 28 1 -0.3633 0.5114 0.8914 29 1 -0.3633 0.5162 -0.8886 30 1 -0.3633 -1.0276 -0.0029 31 1 3.1326 1.4395 -0.0028 32 1 1.6779 1.9568 -0.8886 33 1 1.6825 1.9552 0.8913 34 1 1.6446 -1.7400 1.2675 35 1 1.7161 -0.1896 2.1397 36 1 3.9377 -1.3035 2.0917 37 1 3.9673 0.2401 1.2060 38 1 5.7776 -2.0982 0.9522 39 1 5.9582 -0.7052 -0.1410 40 1 8.7161 -3.4412 0.0268 41 1 7.6428 -2.1343 0.5817 42 1 6.9076 0.6719 -1.7498 43 1 9.5088 -4.0806 -1.6603 44 1 10.1641 -5.4500 -3.5975 45 1 8.5524 -5.8758 -5.4080 46 1 6.2787 -4.9423 -5.2827 47 1 5.6106 -3.5796 -3.3452 48 1 3.9675 0.2400 -1.2058 49 1 3.9379 -1.3035 -2.0916 50 1 1.6447 -1.7401 -1.2674 51 1 1.7156 -0.1895 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339253823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:02 Heat of formation + Delta-G solvation = -4.151057 kcal Electronic energy + Delta-G solvation = -30278.062016 eV Core-core repulsion = 26563.143336 eV Total energy + Delta-G solvation = -3714.918680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58008 -40.41072 -38.92533 -36.81973 -35.92949 -34.26382 -31.74697 -31.63425 -31.24551 -30.00265 -29.04075 -28.17911 -26.50222 -25.08031 -24.07054 -23.52699 -22.81051 -22.26657 -20.26774 -19.19075 -18.98220 -17.94153 -17.48391 -16.92793 -16.67350 -16.44637 -16.08965 -15.72578 -15.67121 -15.32005 -14.98778 -14.93568 -14.82920 -14.47332 -14.29138 -14.08073 -13.78091 -13.65312 -13.35964 -13.19517 -12.98383 -12.88304 -12.81896 -12.75592 -12.59472 -12.53583 -12.36924 -12.27312 -11.98836 -11.93682 -11.78473 -11.69594 -11.38634 -11.07707 -11.00561 -10.74479 -10.59919 -9.91928 -9.64072 -9.07702 -8.44083 -8.07731 -6.40534 0.62593 0.69998 1.33563 1.41420 1.47994 2.06571 2.33997 2.37168 3.07645 3.18359 3.29172 3.80375 3.89875 3.92793 4.01861 4.25766 4.29485 4.37749 4.41507 4.42646 4.53339 4.57714 4.61836 4.71299 4.74201 4.77999 4.82304 4.82997 4.86040 4.88544 4.97064 4.98125 5.05220 5.09264 5.13690 5.18473 5.21380 5.24759 5.36404 5.36894 5.41919 5.46876 5.60292 5.66655 5.69376 5.72889 5.82779 5.94111 6.05640 6.20732 6.38692 6.48684 6.65159 6.92950 7.33540 7.61646 8.75127 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.004400 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.315435 B = 6361.969520 C = 7605.389429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.096 4.096 5 C 0.054 3.946 6 N -0.532 5.532 7 C 0.029 3.971 8 C 0.540 3.460 9 O -0.568 6.568 10 N -0.528 5.528 11 C 0.219 3.781 12 C -0.540 4.540 13 H 0.064 0.936 14 C 0.043 3.957 15 N -0.887 5.887 16 Si 0.948 3.052 17 H -0.266 1.266 18 H -0.297 1.297 19 H -0.276 1.276 20 C 0.164 3.836 21 C -0.165 4.165 22 C -0.103 4.103 23 C -0.164 4.164 24 C -0.111 4.111 25 C -0.206 4.206 26 C 0.068 3.932 27 C -0.095 4.095 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.261 0.739 43 H 0.125 0.875 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.133 0.867 47 H 0.147 0.853 48 H 0.016 0.984 49 H 0.054 0.946 50 H 0.056 0.944 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 -0.645 3.032 7.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.133 4.133 5 C -0.073 4.073 6 N -0.257 5.257 7 C -0.100 4.100 8 C 0.333 3.667 9 O -0.451 6.451 10 N -0.247 5.247 11 C 0.100 3.900 12 C -0.578 4.578 13 H 0.082 0.918 14 C -0.159 4.159 15 N -0.526 5.526 16 Si 0.775 3.225 17 H -0.190 1.190 18 H -0.224 1.224 19 H -0.202 1.202 20 C 0.067 3.933 21 C -0.185 4.185 22 C -0.121 4.121 23 C -0.183 4.183 24 C -0.129 4.129 25 C -0.226 4.226 26 C -0.060 4.060 27 C -0.133 4.133 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.143 0.857 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.151 0.849 47 H 0.164 0.836 48 H 0.034 0.966 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.778 -1.148 2.678 8.305 hybrid contribution 1.266 1.614 -0.616 2.142 sum -6.512 0.466 2.061 6.846 Atomic orbital electron populations 1.21780 0.92960 1.01923 1.02284 1.20594 0.96383 0.94979 0.94574 1.21920 1.00266 0.95445 1.02129 1.21600 0.93170 1.00809 0.97755 1.22166 0.96986 0.96151 0.92006 1.61643 1.11210 1.50102 1.02781 1.22596 0.89273 1.02541 0.95633 1.20794 0.80830 0.79012 0.86093 1.90221 1.50937 1.57024 1.46889 1.46262 1.08997 1.46628 1.22805 1.19564 0.87674 0.94630 0.88111 1.21649 0.93726 1.04253 1.38175 0.91752 1.25505 0.96014 0.99025 0.95382 1.69575 1.12303 1.24608 1.46085 0.85658 0.79822 0.79240 0.77805 1.19048 1.22433 1.20180 1.18324 0.94595 0.92171 0.88202 1.21009 0.94908 1.01311 1.01303 1.21213 1.00340 0.97419 0.93118 1.21288 0.93559 1.03207 1.00277 1.21282 0.97229 0.97260 0.97157 1.22427 1.02770 1.02924 0.94443 1.21964 0.96126 0.94791 0.93127 1.21571 0.93535 1.00247 0.97946 0.91374 0.92452 0.92707 0.94298 0.92636 0.91301 0.91770 0.89577 0.90736 0.95312 0.90045 0.85659 0.93669 0.93200 0.92895 0.85725 0.83481 0.83629 0.84947 0.83645 0.96570 0.92744 0.92473 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.49 71.98 0.61 -1.93 16 2 C -0.07 -1.58 0.77 -52.10 -0.04 -1.63 16 3 C -0.14 -3.34 7.90 71.98 0.57 -2.77 16 4 C -0.10 -2.35 4.88 30.65 0.15 -2.20 16 5 C 0.05 1.65 5.21 86.33 0.45 2.10 16 6 N -0.53 -20.20 4.42 -900.92 -3.98 -24.18 16 7 C 0.03 1.25 3.74 85.56 0.32 1.57 16 8 C 0.54 25.85 6.22 87.66 0.55 26.40 16 9 O -0.57 -29.00 10.67 -3.06 -0.03 -29.03 16 10 N -0.53 -25.02 2.32 -635.30 -1.47 -26.49 16 11 C 0.22 9.88 5.04 85.63 0.43 10.31 16 12 C -0.54 -26.12 8.37 25.60 0.21 -25.90 16 13 H 0.06 3.08 7.82 -2.91 -0.02 3.05 16 14 C 0.04 2.10 5.33 84.65 0.45 2.55 16 15 N -0.89 -44.63 8.31 21.45 0.18 -44.45 16 16 Si 0.95 41.15 29.54 68.60 2.03 43.18 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 18 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 19 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 20 C 0.16 7.59 6.28 38.15 0.24 7.83 16 21 C -0.16 -6.70 8.88 22.39 0.20 -6.50 16 22 C -0.10 -3.46 10.04 22.25 0.22 -3.24 16 23 C -0.16 -5.32 10.04 22.29 0.22 -5.10 16 24 C -0.11 -4.12 10.04 22.25 0.22 -3.89 16 25 C -0.21 -9.36 8.97 22.39 0.20 -9.16 16 26 C 0.07 2.61 4.86 86.33 0.42 3.03 16 27 C -0.10 -2.91 4.88 30.65 0.15 -2.76 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.04 1.10 4.92 -2.39 -0.01 1.09 16 32 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 2.11 8.02 -2.39 -0.02 2.09 16 37 H 0.03 0.90 6.51 -2.38 -0.02 0.88 16 38 H 0.08 3.25 7.03 -2.39 -0.02 3.23 16 39 H 0.13 5.84 4.87 -2.39 -0.01 5.83 16 40 H 0.05 1.87 7.06 -2.39 -0.02 1.85 16 41 H 0.05 2.22 5.81 -2.39 -0.01 2.20 16 42 H 0.26 13.04 8.32 -92.71 -0.77 12.27 16 43 H 0.12 4.97 6.14 -2.91 -0.02 4.95 16 44 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 46 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 47 H 0.15 7.34 4.73 -45.18 -0.21 7.13 16 48 H 0.02 0.65 6.51 -2.39 -0.02 0.63 16 49 H 0.05 2.53 5.66 -2.39 -0.01 2.51 16 50 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -57.73 377.39 3.01 -54.71 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 0.72 Total: 37.54 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 5.58 Total: -11.28 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -5.28 Total: -95.12 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.03 Total: -29.03 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -57.73 3.01 -54.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339253823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.563 kcal (2) G-P(sol) polarization free energy of solvation -57.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds