Wall clock time and date at job start Tue Mar 31 2020 16:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53111 * 109.52241 * 2 1 4 4 C 1.53041 * 109.27890 * 182.37341 * 3 2 1 5 5 N 1.46846 * 109.51760 * 59.18337 * 4 3 2 6 6 C 1.46904 * 111.00066 * 174.15927 * 5 4 3 7 7 C 1.52997 * 109.47385 * 169.99564 * 6 5 4 8 8 C 1.53000 * 109.47279 * 180.02562 * 7 6 5 9 9 N 1.46492 * 109.47280 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00156 * 180.02562 * 9 8 7 11 11 O 1.21585 * 119.99754 * 359.97438 * 10 9 8 12 12 C 1.47637 * 120.00145 * 179.72425 * 10 9 8 13 13 C 1.40014 * 119.89510 * 359.97438 * 12 10 9 14 14 C 1.36318 * 120.10704 * 179.76235 * 13 12 10 15 15 C 1.40894 * 119.88877 * 0.53956 * 14 13 12 16 16 C 1.41106 * 120.10121 * 179.69831 * 15 14 13 17 17 H 1.08005 * 119.99846 * 204.65116 * 16 15 14 18 18 C 1.40226 * 120.00223 * 24.64677 * 16 15 14 19 19 N 1.30648 * 120.00062 * 17.86840 * 18 16 15 20 20 Si 1.86798 * 120.00018 * 197.86716 * 18 16 15 21 21 H 1.48496 * 109.47294 * 60.00236 * 20 18 16 22 22 H 1.48506 * 109.47215 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47332 * 299.99962 * 20 18 16 24 24 C 1.40888 * 119.79614 * 359.71340 * 15 14 13 25 25 C 1.36319 * 119.88966 * 0.02562 * 24 15 14 26 26 C 1.46850 * 111.20009 * 298.25464 * 5 4 3 27 27 C 1.53038 * 109.52208 * 61.74603 * 26 5 4 28 28 H 1.08996 * 109.46727 * 59.99884 * 1 2 3 29 29 H 1.09001 * 109.46728 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47128 * 299.99966 * 1 2 3 31 31 H 1.09001 * 109.51855 * 120.12777 * 2 1 3 32 32 H 1.09004 * 109.50137 * 62.43852 * 3 2 1 33 33 H 1.08993 * 109.53924 * 302.33818 * 3 2 1 34 34 H 1.08999 * 109.46117 * 299.16947 * 4 3 2 35 35 H 1.08999 * 109.45163 * 179.18638 * 4 3 2 36 36 H 1.08998 * 109.46750 * 49.99830 * 6 5 4 37 37 H 1.08995 * 109.47312 * 290.00320 * 6 5 4 38 38 H 1.08998 * 109.46960 * 60.00394 * 7 6 5 39 39 H 1.08995 * 109.47513 * 300.00633 * 7 6 5 40 40 H 1.09004 * 109.47254 * 59.99851 * 8 7 6 41 41 H 1.09006 * 109.46696 * 300.00557 * 8 7 6 42 42 H 0.96998 * 120.00510 * 359.97438 * 9 8 7 43 43 H 1.07994 * 119.94676 * 359.97438 * 13 12 10 44 44 H 1.07994 * 120.05532 * 180.23415 * 14 13 12 45 45 H 0.97003 * 119.99934 * 179.97438 * 19 18 16 46 46 H 1.07998 * 120.05650 * 179.97438 * 24 15 14 47 47 H 1.07994 * 119.94863 * 179.97438 * 25 24 15 48 48 H 1.09000 * 109.46307 * 181.75954 * 26 5 4 49 49 H 1.08997 * 109.46066 * 301.72949 * 26 5 4 50 50 H 1.08996 * 109.50549 * 180.88021 * 27 26 5 51 51 H 1.08996 * 109.50404 * 60.75657 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5710 1.4370 -0.0598 5 7 4.0116 0.7425 -1.2763 6 6 5.4686 0.8373 -1.4382 7 6 5.9186 -0.0962 -2.5638 8 6 7.4361 0.0021 -2.7319 9 7 7.8669 -0.8913 -3.8100 10 6 9.1717 -0.9715 -4.1380 11 8 9.9912 -0.3020 -3.5393 12 6 9.6065 -1.8764 -5.2204 13 6 8.6616 -2.6508 -5.9045 14 6 9.0577 -3.4842 -6.9079 15 6 10.4219 -3.5740 -7.2486 16 6 10.8377 -4.4399 -8.2822 17 1 11.8489 -4.8192 -8.2949 18 6 9.9380 -4.8081 -9.2929 19 7 8.8538 -4.1062 -9.4898 20 14 10.2898 -6.3020 -10.3577 21 1 10.3801 -7.5110 -9.5001 22 1 9.1938 -6.4756 -11.3447 23 1 11.5752 -6.1069 -11.0752 24 6 11.3697 -2.7968 -6.5538 25 6 10.9633 -1.9623 -5.5555 26 6 3.5722 -0.6587 -1.2766 27 6 2.0430 -0.7152 -1.2530 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8943 -0.5157 0.8886 32 1 1.7152 1.9449 0.9109 33 1 1.6457 1.9703 -0.8679 34 1 3.9666 0.9223 0.8157 35 1 3.9377 2.4633 -0.0745 36 1 5.9571 0.5468 -0.5082 37 1 5.7406 1.8632 -1.6864 38 1 5.4301 0.1943 -3.4938 39 1 5.6465 -1.1221 -2.3156 40 1 7.9244 -0.2887 -1.8017 41 1 7.7084 1.0280 -2.9799 42 1 7.2132 -1.4258 -4.2874 43 1 7.6169 -2.5852 -5.6391 44 1 8.3278 -4.0782 -7.4375 45 1 8.2317 -4.3607 -10.1892 46 1 12.4165 -2.8627 -6.8112 47 1 11.6890 -1.3664 -5.0220 48 1 3.9401 -1.1545 -2.1749 49 1 3.9679 -1.1635 -0.3953 50 1 1.7175 -1.7553 -1.2374 51 1 1.6470 -0.2225 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340067384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:22 Heat of formation + Delta-G solvation = -42.935261 kcal Electronic energy + Delta-G solvation = -26995.196920 eV Core-core repulsion = 23278.596430 eV Total energy + Delta-G solvation = -3716.600490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.65880 -39.02538 -37.17397 -35.98637 -34.27175 -33.86844 -31.65425 -31.03045 -30.02409 -29.43820 -28.14146 -26.08015 -24.50420 -23.77314 -22.44704 -21.68193 -21.05505 -20.77939 -19.95978 -19.45105 -17.52938 -16.88755 -16.29790 -15.86088 -15.56677 -15.20276 -15.06388 -14.80143 -14.55562 -14.35304 -14.03771 -13.86700 -13.72075 -13.22607 -13.17208 -12.77890 -12.69998 -12.49797 -12.33898 -12.13955 -12.09919 -11.91090 -11.61998 -11.51479 -11.44308 -11.32909 -11.26344 -11.06685 -10.97689 -10.91852 -10.63493 -10.58169 -10.39138 -10.06288 -9.55839 -9.34837 -8.96349 -8.59860 -8.53988 -7.72072 -7.54201 -7.03716 -4.60404 2.24042 2.92280 2.93954 2.98156 3.03729 3.51054 3.73473 3.88037 3.89486 4.41857 4.46374 4.47779 4.57002 4.78822 4.86223 4.98167 4.99495 5.10774 5.15300 5.20407 5.29620 5.34437 5.39023 5.42825 5.54109 5.56184 5.59426 5.61347 5.67400 5.75017 5.81094 5.85646 5.87117 5.94270 6.04710 6.07280 6.12949 6.22724 6.32281 6.76807 6.81581 6.82605 6.84395 6.95332 7.06800 7.13657 7.43471 7.65550 7.79308 7.85760 8.07074 8.25306 8.39605 8.62895 8.75324 9.09094 9.88290 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016179 B = 0.001904 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.262011 B =14699.888094 C =16222.831243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.111 4.111 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.060 3.940 7 C -0.135 4.135 8 C 0.126 3.874 9 N -0.742 5.742 10 C 0.571 3.429 11 O -0.577 6.577 12 C -0.285 4.285 13 C -0.063 4.063 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.443 4.443 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.239 4.239 25 C -0.022 4.022 26 C 0.046 3.954 27 C -0.112 4.112 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.287 0.713 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.031 0.969 50 H 0.065 0.935 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.850 5.251 13.416 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.149 4.149 4 C -0.073 4.073 5 N -0.262 5.262 6 C -0.068 4.068 7 C -0.173 4.173 8 C 0.001 3.999 9 N -0.396 5.396 10 C 0.366 3.634 11 O -0.459 6.459 12 C -0.289 4.289 13 C -0.082 4.082 14 C -0.198 4.198 15 C 0.125 3.875 16 C -0.471 4.471 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.737 3.263 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.258 4.258 25 C -0.041 4.041 26 C -0.082 4.082 27 C -0.150 4.150 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.138 0.862 45 H 0.098 0.902 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.102 0.898 49 H 0.050 0.950 50 H 0.084 0.916 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.713 5.999 13.291 21.437 hybrid contribution 0.082 -1.228 -0.085 1.234 sum -15.631 4.771 13.206 21.012 Atomic orbital electron populations 1.21810 0.95107 1.01661 1.01744 1.21199 0.95635 0.96257 0.98329 1.21642 0.94583 0.96520 1.02121 1.22083 0.95847 0.98977 0.90378 1.61991 1.12294 1.14270 1.37626 1.22010 0.86839 1.00596 0.97365 1.21950 0.95280 1.00193 0.99880 1.21083 0.93077 0.94710 0.91022 1.45882 1.09067 1.46488 1.38119 1.18588 0.80886 0.81270 0.82661 1.90629 1.52702 1.47078 1.55488 1.18909 0.94742 1.09643 1.05639 1.20470 0.96005 0.96032 0.95672 1.20973 0.96862 1.02941 0.98974 1.17790 0.91719 0.88161 0.89857 1.19816 0.98682 1.22960 1.05592 0.89747 1.26101 0.93968 0.96948 0.97684 1.69738 1.09298 1.33737 1.26713 0.86260 0.79345 0.81405 0.79250 1.18480 1.20054 1.18660 1.20715 0.98556 1.03437 1.03127 1.20365 0.93801 0.95434 0.94536 1.22251 0.95699 0.88962 1.01247 1.21660 0.94733 1.00269 0.98316 0.92551 0.92750 0.92847 0.91701 0.91712 0.91008 0.95022 0.90735 0.94584 0.90221 0.90271 0.91040 0.92297 0.92010 0.76782 0.89344 0.86195 0.90174 0.88385 0.88122 0.89753 0.95034 0.91598 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.21 37.16 0.34 -0.54 16 2 C -0.10 -0.67 2.79 -90.49 -0.25 -0.92 16 3 C -0.11 -0.78 5.38 -26.65 -0.14 -0.93 16 4 C 0.06 0.44 5.42 -3.83 -0.02 0.42 16 5 N -0.54 -4.97 4.81 -234.67 -1.13 -6.10 16 6 C 0.06 0.57 5.27 -3.82 -0.02 0.55 16 7 C -0.14 -1.41 4.58 -26.73 -0.12 -1.53 16 8 C 0.13 1.74 5.67 -4.05 -0.02 1.72 16 9 N -0.74 -12.44 5.50 -61.32 -0.34 -12.78 16 10 C 0.57 12.31 7.76 -12.42 -0.10 12.21 16 11 O -0.58 -13.97 16.32 5.29 0.09 -13.88 16 12 C -0.28 -6.57 5.89 -104.73 -0.62 -7.18 16 13 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 14 C -0.18 -4.36 8.64 -39.27 -0.34 -4.70 16 15 C 0.13 3.27 5.58 -106.80 -0.60 2.67 16 16 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 17 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 18 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 19 N -0.77 -18.45 10.95 55.56 0.61 -17.84 16 20 Si 0.91 17.22 29.60 -169.99 -5.03 12.19 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 22 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 23 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 24 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 25 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 26 C 0.05 0.40 4.85 -3.83 -0.02 0.38 16 27 C -0.11 -0.86 5.38 -26.65 -0.14 -1.00 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 36 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.71 6.21 -51.93 -0.32 0.39 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.40 5.92 6.47 -40.82 -0.26 5.65 16 43 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 44 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 45 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 46 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 47 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 48 H 0.08 0.75 5.81 -51.93 -0.30 0.45 16 49 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -28.31 400.92 -12.05 -40.37 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -8.68 Total: 9.41 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -3.61 Total: -17.42 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.86 Total: -36.71 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.31 -12.05 -40.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340067384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.569 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds