Wall clock time and date at job start Tue Mar 31 2020 16:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53111 * 109.52241 * 2 1 4 4 C 1.53041 * 109.27890 * 182.37341 * 3 2 1 5 5 N 1.46846 * 109.51760 * 59.18337 * 4 3 2 6 6 C 1.46904 * 111.00066 * 174.15927 * 5 4 3 7 7 C 1.52997 * 109.47385 * 169.99564 * 6 5 4 8 8 C 1.53000 * 109.47279 * 180.02562 * 7 6 5 9 9 N 1.46492 * 109.47280 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00156 * 180.02562 * 9 8 7 11 11 O 1.21585 * 119.99754 * 359.97438 * 10 9 8 12 12 C 1.47637 * 120.00145 * 179.72425 * 10 9 8 13 13 C 1.40014 * 119.89510 * 359.97438 * 12 10 9 14 14 C 1.36318 * 120.10704 * 179.76235 * 13 12 10 15 15 C 1.40894 * 119.88877 * 0.53956 * 14 13 12 16 16 C 1.41106 * 120.10121 * 179.69831 * 15 14 13 17 17 H 1.08005 * 119.99846 * 204.65116 * 16 15 14 18 18 C 1.40226 * 120.00223 * 24.64677 * 16 15 14 19 19 N 1.30648 * 120.00062 * 17.86840 * 18 16 15 20 20 Si 1.86798 * 120.00018 * 197.86716 * 18 16 15 21 21 H 1.48496 * 109.47294 * 60.00236 * 20 18 16 22 22 H 1.48506 * 109.47215 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47332 * 299.99962 * 20 18 16 24 24 C 1.40888 * 119.79614 * 359.71340 * 15 14 13 25 25 C 1.36319 * 119.88966 * 0.02562 * 24 15 14 26 26 C 1.46850 * 111.20009 * 298.25464 * 5 4 3 27 27 C 1.53038 * 109.52208 * 61.74603 * 26 5 4 28 28 H 1.08996 * 109.46727 * 59.99884 * 1 2 3 29 29 H 1.09001 * 109.46728 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47128 * 299.99966 * 1 2 3 31 31 H 1.09001 * 109.51855 * 120.12777 * 2 1 3 32 32 H 1.09004 * 109.50137 * 62.43852 * 3 2 1 33 33 H 1.08993 * 109.53924 * 302.33818 * 3 2 1 34 34 H 1.08999 * 109.46117 * 299.16947 * 4 3 2 35 35 H 1.08999 * 109.45163 * 179.18638 * 4 3 2 36 36 H 1.08998 * 109.46750 * 49.99830 * 6 5 4 37 37 H 1.08995 * 109.47312 * 290.00320 * 6 5 4 38 38 H 1.08998 * 109.46960 * 60.00394 * 7 6 5 39 39 H 1.08995 * 109.47513 * 300.00633 * 7 6 5 40 40 H 1.09004 * 109.47254 * 59.99851 * 8 7 6 41 41 H 1.09006 * 109.46696 * 300.00557 * 8 7 6 42 42 H 0.96998 * 120.00510 * 359.97438 * 9 8 7 43 43 H 1.07994 * 119.94676 * 359.97438 * 13 12 10 44 44 H 1.07994 * 120.05532 * 180.23415 * 14 13 12 45 45 H 0.97003 * 119.99934 * 179.97438 * 19 18 16 46 46 H 1.07998 * 120.05650 * 179.97438 * 24 15 14 47 47 H 1.07994 * 119.94863 * 179.97438 * 25 24 15 48 48 H 1.09000 * 109.46307 * 181.75954 * 26 5 4 49 49 H 1.08997 * 109.46066 * 301.72949 * 26 5 4 50 50 H 1.08996 * 109.50549 * 180.88021 * 27 26 5 51 51 H 1.08996 * 109.50404 * 60.75657 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5710 1.4370 -0.0598 5 7 4.0116 0.7425 -1.2763 6 6 5.4686 0.8373 -1.4382 7 6 5.9186 -0.0962 -2.5638 8 6 7.4361 0.0021 -2.7319 9 7 7.8669 -0.8913 -3.8100 10 6 9.1717 -0.9715 -4.1380 11 8 9.9912 -0.3020 -3.5393 12 6 9.6065 -1.8764 -5.2204 13 6 8.6616 -2.6508 -5.9045 14 6 9.0577 -3.4842 -6.9079 15 6 10.4219 -3.5740 -7.2486 16 6 10.8377 -4.4399 -8.2822 17 1 11.8489 -4.8192 -8.2949 18 6 9.9380 -4.8081 -9.2929 19 7 8.8538 -4.1062 -9.4898 20 14 10.2898 -6.3020 -10.3577 21 1 10.3801 -7.5110 -9.5001 22 1 9.1938 -6.4756 -11.3447 23 1 11.5752 -6.1069 -11.0752 24 6 11.3697 -2.7968 -6.5538 25 6 10.9633 -1.9623 -5.5555 26 6 3.5722 -0.6587 -1.2766 27 6 2.0430 -0.7152 -1.2530 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8943 -0.5157 0.8886 32 1 1.7152 1.9449 0.9109 33 1 1.6457 1.9703 -0.8679 34 1 3.9666 0.9223 0.8157 35 1 3.9377 2.4633 -0.0745 36 1 5.9571 0.5468 -0.5082 37 1 5.7406 1.8632 -1.6864 38 1 5.4301 0.1943 -3.4938 39 1 5.6465 -1.1221 -2.3156 40 1 7.9244 -0.2887 -1.8017 41 1 7.7084 1.0280 -2.9799 42 1 7.2132 -1.4258 -4.2874 43 1 7.6169 -2.5852 -5.6391 44 1 8.3278 -4.0782 -7.4375 45 1 8.2317 -4.3607 -10.1892 46 1 12.4165 -2.8627 -6.8112 47 1 11.6890 -1.3664 -5.0220 48 1 3.9401 -1.1545 -2.1749 49 1 3.9679 -1.1635 -0.3953 50 1 1.7175 -1.7553 -1.2374 51 1 1.6470 -0.2225 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340067384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:21 Heat of formation + Delta-G solvation = -57.814915 kcal Electronic energy + Delta-G solvation = -26995.842150 eV Core-core repulsion = 23278.596430 eV Total energy + Delta-G solvation = -3717.245720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.81819 -40.21402 -38.92909 -36.96785 -35.66942 -35.39723 -32.79724 -31.87956 -31.46364 -31.27222 -28.98018 -27.68378 -25.58698 -24.46997 -23.58715 -23.02725 -22.66477 -21.83855 -21.04639 -20.54034 -19.36414 -18.42328 -17.40934 -17.13528 -16.83243 -16.48383 -15.90097 -15.74991 -15.65843 -15.42209 -15.26264 -15.06285 -14.90000 -14.87039 -14.43028 -14.00210 -13.88487 -13.65095 -13.46891 -13.27421 -13.22039 -13.02120 -12.84713 -12.79045 -12.63755 -12.41175 -12.37147 -12.26878 -12.11016 -11.85428 -11.78867 -11.52674 -11.36799 -11.16215 -11.11345 -11.02599 -10.71085 -10.07252 -9.57278 -9.40530 -9.26071 -8.79218 -6.48151 0.44332 1.15228 1.39333 1.44831 1.52593 2.12333 2.18243 2.34867 2.78858 2.95389 3.69174 3.81184 3.85662 3.89422 3.98941 4.03679 4.07242 4.31837 4.32757 4.34508 4.44044 4.45126 4.49724 4.51951 4.63121 4.63999 4.74952 4.77585 4.85511 4.85585 4.92577 4.95137 5.02934 5.04156 5.13500 5.14593 5.16019 5.17652 5.25803 5.30096 5.30383 5.35688 5.55506 5.56083 5.60183 5.82493 5.94619 5.99448 6.12333 6.17183 6.22844 6.53878 6.71066 6.77147 6.89138 7.43998 8.15852 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016179 B = 0.001904 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.262011 B =14699.888094 C =16222.831243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.107 4.107 4 C 0.053 3.947 5 N -0.544 5.544 6 C 0.063 3.937 7 C -0.120 4.120 8 C 0.126 3.874 9 N -0.725 5.725 10 C 0.570 3.430 11 O -0.608 6.608 12 C -0.295 4.295 13 C -0.053 4.053 14 C -0.198 4.198 15 C 0.100 3.900 16 C -0.473 4.473 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.797 5.797 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.263 1.263 23 H -0.259 1.259 24 C -0.253 4.253 25 C -0.034 4.034 26 C 0.044 3.956 27 C -0.110 4.110 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.408 0.592 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.297 0.703 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.029 0.971 50 H 0.072 0.928 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.669 4.763 13.573 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.145 4.145 4 C -0.075 4.075 5 N -0.269 5.269 6 C -0.065 4.065 7 C -0.158 4.158 8 C 0.002 3.998 9 N -0.377 5.377 10 C 0.364 3.636 11 O -0.493 6.493 12 C -0.300 4.300 13 C -0.072 4.072 14 C -0.217 4.217 15 C 0.097 3.903 16 C -0.500 4.500 17 H 0.103 0.897 18 C -0.181 4.181 19 N -0.421 5.421 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.187 1.187 23 H -0.183 1.183 24 C -0.273 4.273 25 C -0.053 4.053 26 C -0.083 4.083 27 C -0.148 4.148 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.245 0.755 43 H 0.143 0.857 44 H 0.133 0.867 45 H 0.109 0.891 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.101 0.899 49 H 0.047 0.953 50 H 0.091 0.909 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.579 5.525 13.464 22.821 hybrid contribution 0.610 -0.998 -0.074 1.172 sum -16.969 4.527 13.390 22.085 Atomic orbital electron populations 1.21781 0.94321 1.01944 1.01992 1.21196 0.96284 0.96044 0.97846 1.21622 0.93795 0.96657 1.02441 1.22144 0.96544 0.98994 0.89797 1.62018 1.11838 1.14663 1.38388 1.21948 0.87290 1.00370 0.96911 1.21814 0.92483 1.01036 1.00429 1.21234 0.95327 0.93615 0.89630 1.45750 1.07595 1.46184 1.38177 1.18415 0.82201 0.80809 0.82201 1.90610 1.53972 1.48249 1.56444 1.19195 0.94671 1.09963 1.06153 1.20730 0.97669 0.94477 0.94309 1.21017 0.96481 1.04111 1.00100 1.18156 0.92594 0.88898 0.90681 1.20093 0.99489 1.23960 1.06492 0.89655 1.26932 0.93401 0.99375 0.98440 1.69757 1.09976 1.34893 1.27425 0.85155 0.79456 0.77222 0.77422 1.18215 1.18747 1.18323 1.20850 0.98927 1.03862 1.03617 1.20516 0.94664 0.95499 0.94608 1.22283 0.96423 0.88649 1.00992 1.21644 0.93980 1.00748 0.98395 0.92713 0.92470 0.92192 0.91836 0.90506 0.91617 0.95132 0.90385 0.94556 0.90087 0.90048 0.90206 0.92673 0.92537 0.75492 0.85750 0.86738 0.89128 0.87813 0.88010 0.89922 0.95319 0.90923 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.21 71.98 0.66 -0.82 16 2 C -0.10 -1.17 2.79 -10.71 -0.03 -1.20 16 3 C -0.11 -1.34 5.38 30.64 0.16 -1.18 16 4 C 0.05 0.77 5.42 86.33 0.47 1.24 16 5 N -0.54 -9.20 4.81 -896.36 -4.31 -13.51 16 6 C 0.06 1.10 5.27 86.30 0.46 1.55 16 7 C -0.12 -2.27 4.58 30.59 0.14 -2.13 16 8 C 0.13 3.30 5.67 86.38 0.49 3.79 16 9 N -0.72 -23.18 5.50 -466.17 -2.57 -25.74 16 10 C 0.57 24.23 7.76 86.72 0.67 24.91 16 11 O -0.61 -29.43 16.32 -3.98 -0.07 -29.50 16 12 C -0.30 -13.58 5.89 -19.93 -0.12 -13.70 16 13 C -0.05 -2.31 9.47 22.25 0.21 -2.10 16 14 C -0.20 -9.75 8.64 22.47 0.19 -9.55 16 15 C 0.10 5.21 5.58 -21.28 -0.12 5.09 16 16 C -0.47 -23.89 9.04 23.46 0.21 -23.67 16 17 H 0.09 4.12 7.91 -2.91 -0.02 4.10 16 18 C 0.04 1.74 5.14 85.35 0.44 2.18 16 19 N -0.80 -37.91 10.95 21.87 0.24 -37.67 16 20 Si 0.99 34.58 29.60 68.60 2.03 36.61 16 21 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 22 H -0.26 -8.62 7.11 99.48 0.71 -7.92 16 23 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 24 C -0.25 -12.66 9.73 22.47 0.22 -12.44 16 25 C -0.03 -1.64 9.52 22.25 0.21 -1.42 16 26 C 0.04 0.70 4.85 86.33 0.42 1.12 16 27 C -0.11 -1.52 5.38 30.65 0.16 -1.35 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.03 0.45 8.14 -2.39 -0.02 0.44 16 35 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 36 H 0.04 0.64 8.08 -2.39 -0.02 0.62 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.41 6.21 -2.39 -0.01 1.40 16 40 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.41 11.21 6.47 -92.71 -0.60 10.61 16 43 H 0.12 4.38 6.37 -2.91 -0.02 4.36 16 44 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 45 H 0.30 12.57 8.29 -92.71 -0.77 11.80 16 46 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 47 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 48 H 0.08 1.32 5.81 -2.39 -0.01 1.30 16 49 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -60.91 400.92 0.50 -60.41 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.31 Total: 39.08 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 4.86 Total: -29.68 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -6.63 Total: -76.93 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.07 Total: -29.50 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Total: -60.91 0.50 -60.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340067384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.598 kcal (2) G-P(sol) polarization free energy of solvation -60.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds