Wall clock time and date at job start Tue Mar 31 2020 15:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.21846 * 2 1 4 4 C 1.52741 * 109.25075 * 119.45101 * 2 1 3 5 5 C 1.53323 * 108.37838 * 69.22646 * 4 2 1 6 6 C 1.52733 * 108.37075 * 69.92322 * 5 4 2 7 7 H 1.08997 * 109.25475 * 69.17554 * 6 5 4 8 8 C 1.53004 * 109.25443 * 188.64121 * 6 5 4 9 9 N 1.46501 * 109.46929 * 296.40338 * 8 6 5 10 10 C 1.34783 * 120.00009 * 174.80013 * 9 8 6 11 11 O 1.21590 * 119.99781 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99992 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99659 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46980 * 180.02562 * 13 12 10 15 15 C 1.50693 * 109.47253 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99960 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00092 * 179.97438 * 15 14 13 18 18 N 1.31523 * 120.00317 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00127 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47172 * 270.00127 * 19 17 15 21 21 H 1.48506 * 109.47257 * 30.00059 * 19 17 15 22 22 H 1.48495 * 109.47476 * 149.99821 * 19 17 15 23 23 C 1.50633 * 110.55845 * 308.90708 * 6 5 4 24 24 C 1.38965 * 117.71174 * 197.44919 * 23 6 5 25 25 C 1.37931 * 120.53541 * 180.22350 * 24 23 6 26 26 C 1.38269 * 119.76679 * 0.07277 * 25 24 23 27 27 C 1.37927 * 119.77366 * 359.89256 * 26 25 24 28 28 C 1.37616 * 122.60239 * 17.60568 * 23 6 5 29 29 H 1.08994 * 109.47232 * 300.54935 * 1 2 3 30 30 H 1.08998 * 109.46891 * 60.55588 * 1 2 3 31 31 H 1.09003 * 109.46870 * 180.54661 * 1 2 3 32 32 H 1.09003 * 109.47371 * 179.44837 * 3 2 1 33 33 H 1.09000 * 109.47146 * 299.44987 * 3 2 1 34 34 H 1.09007 * 109.47393 * 59.44742 * 3 2 1 35 35 H 1.09000 * 109.68144 * 309.50518 * 4 2 1 36 36 H 1.08997 * 109.71467 * 188.96906 * 4 2 1 37 37 H 1.09000 * 109.68503 * 310.20387 * 5 4 2 38 38 H 1.08995 * 109.68603 * 189.64217 * 5 4 2 39 39 H 1.09002 * 109.47060 * 176.40402 * 8 6 5 40 40 H 1.08997 * 109.47131 * 56.40428 * 8 6 5 41 41 H 0.97000 * 120.00033 * 354.79126 * 9 8 6 42 42 H 0.97000 * 120.00049 * 359.97438 * 12 10 9 43 43 H 1.08993 * 109.47425 * 60.00047 * 13 12 10 44 44 H 1.08995 * 109.47256 * 299.99527 * 13 12 10 45 45 H 1.08999 * 109.46863 * 59.99356 * 14 13 12 46 46 H 1.09008 * 109.46823 * 299.99637 * 14 13 12 47 47 H 0.96994 * 120.00533 * 180.02562 * 18 17 15 48 48 H 1.07994 * 119.73994 * 0.30655 * 24 23 6 49 49 H 1.07993 * 120.11943 * 180.02562 * 25 24 23 50 50 H 1.07999 * 120.11297 * 179.91140 * 26 25 24 51 51 H 1.08006 * 119.72539 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0337 1.4447 0.0000 4 6 2.0336 -0.7090 1.2557 5 6 1.7058 -2.2017 1.1323 6 6 2.5964 -2.8020 0.0464 7 1 3.6287 -2.8173 0.3960 8 6 2.1413 -4.2334 -0.2452 9 7 2.3263 -5.0580 0.9515 10 6 1.8950 -6.3349 0.9633 11 8 1.3519 -6.8022 -0.0190 12 7 2.0648 -7.0933 2.0644 13 6 1.5954 -8.4810 2.0774 14 6 1.9081 -9.1124 3.4356 15 6 1.4259 -10.5400 3.4488 16 1 0.9442 -10.9554 2.5760 17 6 1.5996 -11.3159 4.5752 18 7 1.1784 -12.5618 4.5869 19 14 2.4334 -10.5978 6.0846 20 1 3.8973 -10.8323 6.0002 21 1 2.1689 -9.1379 6.1488 22 1 1.8969 -11.2520 7.3049 23 6 2.5120 -1.9868 -1.2174 24 6 2.9499 -2.5764 -2.3972 25 6 2.9031 -1.8811 -3.5875 26 6 2.4183 -0.5863 -3.6076 27 6 1.9826 0.0001 -2.4377 28 6 2.0267 -0.6992 -1.2383 29 1 -0.3633 0.5223 0.8850 30 1 -0.3633 0.5052 -0.8949 31 1 -0.3633 -1.0277 0.0098 32 1 3.1236 1.4495 0.0099 33 1 1.6762 1.9541 -0.8949 34 1 1.6600 1.9598 0.8850 35 1 1.5383 -0.2957 2.1342 36 1 3.1117 -0.5761 1.3456 37 1 0.6582 -2.3261 0.8583 38 1 1.8990 -2.6997 2.0824 39 1 2.7330 -4.6431 -1.0638 40 1 1.0878 -4.2298 -0.5247 41 1 2.7594 -4.6850 1.7353 42 1 2.4977 -6.7203 2.8482 43 1 2.0994 -9.0424 1.2908 44 1 0.5192 -8.5021 1.9065 45 1 1.4039 -8.5508 4.2220 46 1 2.9844 -9.0912 3.6070 47 1 1.3002 -13.1076 5.3794 48 1 3.3285 -3.5876 -2.3823 49 1 3.2448 -2.3459 -4.5004 50 1 2.3805 -0.0363 -4.5363 51 1 1.6036 1.0114 -2.4544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343985949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:55 Heat of formation + Delta-G solvation = -32.624840 kcal Electronic energy + Delta-G solvation = -27895.643061 eV Core-core repulsion = 24179.489664 eV Total energy + Delta-G solvation = -3716.153396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08177 -39.54873 -37.16687 -36.29924 -34.83938 -33.33056 -32.66046 -30.63358 -30.23822 -30.08351 -28.06036 -27.64314 -24.98559 -23.78919 -23.24747 -23.03765 -20.85013 -20.65387 -20.63282 -18.98442 -18.08185 -16.91061 -16.70481 -16.23807 -15.97464 -15.41163 -15.37696 -14.60447 -14.56410 -14.43580 -14.21322 -14.04038 -13.89643 -13.72993 -13.37553 -13.32614 -12.95082 -12.94164 -12.59007 -12.49570 -12.32599 -12.11020 -12.03622 -11.68535 -11.57364 -11.48003 -11.44529 -11.17599 -10.93291 -10.49873 -10.46362 -10.35997 -10.24657 -9.96387 -9.74771 -9.30686 -9.03727 -9.00825 -8.85304 -8.61128 -8.35011 -6.09410 -4.09284 1.09477 1.12759 2.99232 3.26026 3.33501 3.34873 3.48224 3.55845 4.15393 4.21958 4.35936 4.38908 4.46719 4.54109 4.66580 4.78158 4.82984 4.84489 4.91657 5.02222 5.13972 5.16298 5.23415 5.24257 5.27649 5.34012 5.45073 5.48811 5.56603 5.60714 5.69312 5.69712 5.72251 5.79338 5.84323 5.87233 5.90292 6.10554 6.11850 6.26860 6.27431 6.28639 6.40631 6.55902 6.62186 6.75240 6.84660 7.06798 7.26823 7.32232 7.69353 8.32565 8.47962 8.93477 8.96371 9.50683 11.03649 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021620 B = 0.002079 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.762284 B =13462.674157 C =14289.187459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.058 4.058 7 H 0.088 0.912 8 C 0.147 3.853 9 N -0.752 5.752 10 C 0.699 3.301 11 O -0.594 6.594 12 N -0.743 5.743 13 C 0.148 3.852 14 C -0.021 4.021 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.068 3.932 18 N -0.899 5.899 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.266 1.266 22 H -0.287 1.287 23 C -0.066 4.066 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.059 4.059 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.393 0.607 42 H 0.391 0.609 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.264 0.736 48 H 0.126 0.874 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 32.589 -10.536 34.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.077 4.077 7 H 0.106 0.894 8 C 0.022 3.978 9 N -0.410 5.410 10 C 0.398 3.602 11 O -0.473 6.473 12 N -0.396 5.396 13 C 0.026 3.974 14 C -0.059 4.059 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.134 4.134 18 N -0.537 5.537 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.191 1.191 22 H -0.213 1.213 23 C -0.067 4.067 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.059 4.059 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.226 0.774 42 H 0.224 0.776 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.074 0.926 48 H 0.143 0.857 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.791 31.943 -11.349 34.110 hybrid contribution 0.888 0.527 1.452 1.782 sum 4.680 32.470 -9.896 34.266 Atomic orbital electron populations 1.21958 0.93533 1.02425 1.01830 1.19435 0.95820 0.94841 0.92435 1.21967 1.01227 0.94709 1.01933 1.21646 1.01265 0.95074 0.96696 1.21690 1.00316 0.95278 0.98199 1.20255 1.00767 0.93239 0.93407 0.89425 1.21257 1.01791 0.87680 0.87059 1.45116 1.66248 1.11785 1.17803 1.16025 0.79530 0.80613 0.83982 1.90910 1.49129 1.72787 1.34446 1.45515 1.64534 1.14720 1.14870 1.21365 0.98929 0.77193 0.99953 1.19795 0.96726 0.97262 0.92141 1.20923 1.39401 0.94042 1.01620 0.90584 1.25008 0.95117 0.94681 0.98564 1.69906 1.46849 1.07395 1.29560 0.86740 0.79909 0.79711 0.82623 1.20266 1.19108 1.21314 1.19353 0.99290 0.93675 0.94350 1.21321 0.99884 1.00139 0.92235 1.21089 1.00005 0.94849 0.97970 1.21079 0.99433 0.95509 0.98016 1.21169 1.00580 0.99904 0.92161 1.19441 0.98541 0.93327 0.94609 0.92239 0.92569 0.92047 0.92475 0.92314 0.92281 0.91203 0.91525 0.90807 0.91144 0.91666 0.91288 0.77366 0.77635 0.92194 0.92176 0.96051 0.96494 0.92577 0.85660 0.86089 0.86271 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.18 37.16 0.30 -0.64 16 2 C -0.03 -0.17 0.63 -155.83 -0.10 -0.27 16 3 C -0.14 -0.80 7.98 37.15 0.30 -0.50 16 4 C -0.11 -0.71 4.69 -26.70 -0.13 -0.84 16 5 C -0.12 -0.88 4.95 -26.70 -0.13 -1.01 16 6 C -0.06 -0.48 2.28 -91.94 -0.21 -0.69 16 7 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 8 C 0.15 1.60 4.70 -4.04 -0.02 1.59 16 9 N -0.75 -8.95 5.28 -65.22 -0.34 -9.30 16 10 C 0.70 11.85 8.57 -86.92 -0.74 11.10 16 11 O -0.59 -12.73 16.34 5.29 0.09 -12.65 16 12 N -0.74 -12.45 5.56 -65.23 -0.36 -12.81 16 13 C 0.15 3.10 5.61 -4.04 -0.02 3.07 16 14 C -0.02 -0.49 4.15 -27.88 -0.12 -0.61 16 15 C -0.52 -14.70 9.66 -34.45 -0.33 -15.03 16 16 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 19 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.07 -0.59 5.43 -104.61 -0.57 -1.16 16 24 C -0.12 -1.08 9.03 -39.42 -0.36 -1.43 16 25 C -0.12 -1.01 10.05 -39.68 -0.40 -1.41 16 26 C -0.12 -0.95 10.05 -39.68 -0.40 -1.35 16 27 C -0.12 -0.94 8.88 -39.44 -0.35 -1.29 16 28 C -0.06 -0.49 4.70 -104.63 -0.49 -0.98 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 8.05 -51.93 -0.42 -0.05 16 31 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.30 6.36 -51.93 -0.33 -0.03 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.07 0.63 6.24 -51.93 -0.32 0.31 16 38 H 0.07 0.48 7.45 -51.93 -0.39 0.10 16 39 H 0.07 0.76 6.19 -51.93 -0.32 0.43 16 40 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 41 H 0.39 3.50 7.81 -40.82 -0.32 3.18 16 42 H 0.39 5.36 8.49 -40.82 -0.35 5.01 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 46 H 0.02 0.38 7.57 -51.92 -0.39 -0.02 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.13 1.10 6.27 -52.49 -0.33 0.77 16 49 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 50 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 51 H 0.12 0.75 6.32 -52.48 -0.33 0.41 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -33.63 394.34 -10.87 -44.50 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.44 Total: 4.17 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -3.86 Total: -9.59 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.07 Total: -48.79 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.63 -10.87 -44.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343985949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.873 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds