Wall clock time and date at job start Tue Mar 31 2020 15:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.21846 * 2 1 4 4 C 1.52741 * 109.25075 * 119.45101 * 2 1 3 5 5 C 1.53323 * 108.37838 * 69.22646 * 4 2 1 6 6 C 1.52733 * 108.37075 * 69.92322 * 5 4 2 7 7 H 1.08997 * 109.25475 * 69.17554 * 6 5 4 8 8 C 1.53004 * 109.25443 * 188.64121 * 6 5 4 9 9 N 1.46501 * 109.46929 * 296.40338 * 8 6 5 10 10 C 1.34783 * 120.00009 * 174.80013 * 9 8 6 11 11 O 1.21590 * 119.99781 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99992 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99659 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46980 * 180.02562 * 13 12 10 15 15 C 1.50693 * 109.47253 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99960 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00092 * 179.97438 * 15 14 13 18 18 N 1.31523 * 120.00317 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00127 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47172 * 270.00127 * 19 17 15 21 21 H 1.48506 * 109.47257 * 30.00059 * 19 17 15 22 22 H 1.48495 * 109.47476 * 149.99821 * 19 17 15 23 23 C 1.50633 * 110.55845 * 308.90708 * 6 5 4 24 24 C 1.38965 * 117.71174 * 197.44919 * 23 6 5 25 25 C 1.37931 * 120.53541 * 180.22350 * 24 23 6 26 26 C 1.38269 * 119.76679 * 0.07277 * 25 24 23 27 27 C 1.37927 * 119.77366 * 359.89256 * 26 25 24 28 28 C 1.37616 * 122.60239 * 17.60568 * 23 6 5 29 29 H 1.08994 * 109.47232 * 300.54935 * 1 2 3 30 30 H 1.08998 * 109.46891 * 60.55588 * 1 2 3 31 31 H 1.09003 * 109.46870 * 180.54661 * 1 2 3 32 32 H 1.09003 * 109.47371 * 179.44837 * 3 2 1 33 33 H 1.09000 * 109.47146 * 299.44987 * 3 2 1 34 34 H 1.09007 * 109.47393 * 59.44742 * 3 2 1 35 35 H 1.09000 * 109.68144 * 309.50518 * 4 2 1 36 36 H 1.08997 * 109.71467 * 188.96906 * 4 2 1 37 37 H 1.09000 * 109.68503 * 310.20387 * 5 4 2 38 38 H 1.08995 * 109.68603 * 189.64217 * 5 4 2 39 39 H 1.09002 * 109.47060 * 176.40402 * 8 6 5 40 40 H 1.08997 * 109.47131 * 56.40428 * 8 6 5 41 41 H 0.97000 * 120.00033 * 354.79126 * 9 8 6 42 42 H 0.97000 * 120.00049 * 359.97438 * 12 10 9 43 43 H 1.08993 * 109.47425 * 60.00047 * 13 12 10 44 44 H 1.08995 * 109.47256 * 299.99527 * 13 12 10 45 45 H 1.08999 * 109.46863 * 59.99356 * 14 13 12 46 46 H 1.09008 * 109.46823 * 299.99637 * 14 13 12 47 47 H 0.96994 * 120.00533 * 180.02562 * 18 17 15 48 48 H 1.07994 * 119.73994 * 0.30655 * 24 23 6 49 49 H 1.07993 * 120.11943 * 180.02562 * 25 24 23 50 50 H 1.07999 * 120.11297 * 179.91140 * 26 25 24 51 51 H 1.08006 * 119.72539 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0337 1.4447 0.0000 4 6 2.0336 -0.7090 1.2557 5 6 1.7058 -2.2017 1.1323 6 6 2.5964 -2.8020 0.0464 7 1 3.6287 -2.8173 0.3960 8 6 2.1413 -4.2334 -0.2452 9 7 2.3263 -5.0580 0.9515 10 6 1.8950 -6.3349 0.9633 11 8 1.3519 -6.8022 -0.0190 12 7 2.0648 -7.0933 2.0644 13 6 1.5954 -8.4810 2.0774 14 6 1.9081 -9.1124 3.4356 15 6 1.4259 -10.5400 3.4488 16 1 0.9442 -10.9554 2.5760 17 6 1.5996 -11.3159 4.5752 18 7 1.1784 -12.5618 4.5869 19 14 2.4334 -10.5978 6.0846 20 1 3.8973 -10.8323 6.0002 21 1 2.1689 -9.1379 6.1488 22 1 1.8969 -11.2520 7.3049 23 6 2.5120 -1.9868 -1.2174 24 6 2.9499 -2.5764 -2.3972 25 6 2.9031 -1.8811 -3.5875 26 6 2.4183 -0.5863 -3.6076 27 6 1.9826 0.0001 -2.4377 28 6 2.0267 -0.6992 -1.2383 29 1 -0.3633 0.5223 0.8850 30 1 -0.3633 0.5052 -0.8949 31 1 -0.3633 -1.0277 0.0098 32 1 3.1236 1.4495 0.0099 33 1 1.6762 1.9541 -0.8949 34 1 1.6600 1.9598 0.8850 35 1 1.5383 -0.2957 2.1342 36 1 3.1117 -0.5761 1.3456 37 1 0.6582 -2.3261 0.8583 38 1 1.8990 -2.6997 2.0824 39 1 2.7330 -4.6431 -1.0638 40 1 1.0878 -4.2298 -0.5247 41 1 2.7594 -4.6850 1.7353 42 1 2.4977 -6.7203 2.8482 43 1 2.0994 -9.0424 1.2908 44 1 0.5192 -8.5021 1.9065 45 1 1.4039 -8.5508 4.2220 46 1 2.9844 -9.0912 3.6070 47 1 1.3002 -13.1076 5.3794 48 1 3.3285 -3.5876 -2.3823 49 1 3.2448 -2.3459 -4.5004 50 1 2.3805 -0.0363 -4.5363 51 1 1.6036 1.0114 -2.4544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343985949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:55 Heat of formation + Delta-G solvation = -53.302536 kcal Electronic energy + Delta-G solvation = -27896.539713 eV Core-core repulsion = 24179.489664 eV Total energy + Delta-G solvation = -3717.050048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73884 -40.85474 -37.77664 -37.24465 -36.42735 -34.82853 -34.19571 -31.90070 -31.21212 -30.78934 -28.96926 -28.12177 -26.66083 -24.69702 -23.86955 -23.68714 -22.63841 -22.00030 -21.36463 -19.64269 -19.34658 -18.88997 -17.47534 -17.21856 -16.87914 -16.51840 -16.30301 -16.13029 -15.54362 -15.42634 -15.33711 -15.07334 -14.86674 -14.72135 -14.58820 -14.42316 -14.08871 -13.60470 -13.53862 -13.33186 -13.28057 -13.00925 -12.86314 -12.65021 -12.56055 -12.30539 -12.17291 -12.16037 -12.14215 -12.04909 -11.74615 -11.53236 -11.47465 -11.30648 -11.09776 -10.99092 -10.77510 -10.34947 -9.72009 -9.64232 -9.47040 -8.28574 -6.35929 0.46619 0.50260 1.40234 1.43213 1.54470 1.74547 2.17156 2.38297 2.85450 3.06311 3.35076 3.59516 3.64691 3.75093 3.89056 3.98114 4.17537 4.24980 4.27291 4.35426 4.36810 4.38764 4.46362 4.55994 4.57522 4.60680 4.71705 4.77263 4.82145 4.86875 4.96134 4.98073 5.01233 5.05467 5.13083 5.16474 5.16857 5.20857 5.26325 5.34742 5.37587 5.43187 5.46163 5.47102 5.57394 5.67257 5.67765 5.68084 5.80055 6.04583 6.15471 6.24688 6.71448 7.15815 7.28395 7.61348 8.88234 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021620 B = 0.002079 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.762284 B =13462.674157 C =14289.187459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.025 4.025 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.045 4.045 7 H 0.101 0.899 8 C 0.150 3.850 9 N -0.727 5.727 10 C 0.697 3.303 11 O -0.643 6.643 12 N -0.731 5.731 13 C 0.164 3.836 14 C -0.011 4.011 15 C -0.539 4.539 16 H 0.028 0.972 17 C 0.002 3.998 18 N -0.951 5.951 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.235 1.235 22 H -0.287 1.287 23 C -0.081 4.081 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.127 4.127 27 C -0.126 4.126 28 C -0.065 4.065 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.412 0.588 42 H 0.411 0.589 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.268 0.732 48 H 0.121 0.879 49 H 0.132 0.868 50 H 0.138 0.862 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 36.138 -8.758 37.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.196 4.196 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.064 4.064 7 H 0.119 0.881 8 C 0.026 3.974 9 N -0.384 5.384 10 C 0.396 3.604 11 O -0.525 6.525 12 N -0.386 5.386 13 C 0.040 3.960 14 C -0.049 4.049 15 C -0.577 4.577 16 H 0.046 0.954 17 C -0.195 4.195 18 N -0.591 5.591 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.158 1.158 22 H -0.213 1.213 23 C -0.082 4.082 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.065 4.065 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.249 0.751 42 H 0.247 0.753 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.139 0.861 49 H 0.150 0.850 50 H 0.156 0.844 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.332 35.568 -9.554 37.213 hybrid contribution 0.357 -0.595 0.750 1.022 sum 5.688 34.973 -8.804 36.510 Atomic orbital electron populations 1.21945 0.93605 1.01642 1.02416 1.19474 0.95687 0.95484 0.91894 1.21944 1.01055 0.93877 1.02680 1.21638 1.01639 0.94095 0.96956 1.21692 0.99303 0.96304 0.98123 1.20157 1.01530 0.91027 0.93648 0.88100 1.21281 1.00528 0.89216 0.86416 1.44870 1.64803 1.09903 1.18874 1.16174 0.79251 0.81786 0.83149 1.90885 1.51287 1.74107 1.36227 1.45094 1.64578 1.13129 1.15810 1.20864 0.97562 0.79207 0.98395 1.19640 0.97623 0.94160 0.93435 1.21257 1.39254 0.96949 1.00286 0.95403 1.26114 0.95829 0.94904 1.02667 1.70083 1.48699 1.09394 1.30945 0.85505 0.78773 0.80376 0.76999 1.19009 1.15817 1.21335 1.19479 0.99970 0.94270 0.94433 1.21439 1.00662 1.00271 0.92952 1.21317 1.00214 0.95371 0.98207 1.21368 0.98818 0.95373 0.98973 1.21436 1.00272 1.00678 0.92018 1.19681 0.98109 0.93179 0.95572 0.91139 0.92511 0.93502 0.92703 0.91847 0.91306 0.90087 0.91086 0.92110 0.90102 0.92399 0.93366 0.75052 0.75300 0.94197 0.94218 0.94378 0.94542 0.92356 0.86070 0.85015 0.84366 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.18 71.98 0.59 -1.06 16 2 C -0.03 -0.29 0.63 -53.04 -0.03 -0.33 16 3 C -0.14 -1.22 7.98 71.98 0.57 -0.65 16 4 C -0.11 -1.12 4.69 30.62 0.14 -0.97 16 5 C -0.12 -1.52 4.95 30.61 0.15 -1.37 16 6 C -0.05 -0.68 2.28 -11.65 -0.03 -0.71 16 7 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 8 C 0.15 3.22 4.70 86.38 0.41 3.63 16 9 N -0.73 -16.21 5.28 -478.52 -2.52 -18.74 16 10 C 0.70 23.16 8.57 179.05 1.53 24.69 16 11 O -0.64 -28.13 16.34 -4.00 -0.07 -28.19 16 12 N -0.73 -23.36 5.56 -478.54 -2.66 -26.02 16 13 C 0.16 6.88 5.61 86.38 0.48 7.36 16 14 C -0.01 -0.48 4.15 29.85 0.12 -0.35 16 15 C -0.54 -31.01 9.66 25.60 0.25 -30.76 16 16 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 17 C 0.00 0.10 5.47 84.65 0.46 0.57 16 18 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 19 Si 0.96 42.23 27.47 68.60 1.88 44.12 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 C -0.08 -1.39 5.43 -19.86 -0.11 -1.50 16 24 C -0.14 -2.47 9.03 22.37 0.20 -2.27 16 25 C -0.13 -2.17 10.05 22.20 0.22 -1.95 16 26 C -0.13 -1.83 10.05 22.20 0.22 -1.60 16 27 C -0.13 -1.78 8.88 22.36 0.20 -1.58 16 28 C -0.07 -0.99 4.70 -19.87 -0.09 -1.09 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.65 8.05 -2.39 -0.02 0.63 16 31 H 0.05 0.69 6.43 -2.39 -0.02 0.68 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.50 6.36 -2.39 -0.02 0.48 16 34 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 37 H 0.06 0.98 6.24 -2.39 -0.01 0.96 16 38 H 0.08 0.87 7.45 -2.39 -0.02 0.86 16 39 H 0.06 1.36 6.19 -2.39 -0.01 1.34 16 40 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 41 H 0.41 6.12 7.81 -92.71 -0.72 5.40 16 42 H 0.41 9.90 8.49 -92.71 -0.79 9.11 16 43 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 46 H 0.04 1.50 7.57 -2.38 -0.02 1.48 16 47 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 48 H 0.12 2.19 6.27 -2.91 -0.02 2.18 16 49 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 50 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 51 H 0.14 1.40 6.32 -2.91 -0.02 1.39 16 Total: -1.00 -75.68 394.34 1.61 -74.08 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.63 Total: 24.01 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 5.30 Total: -9.94 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -4.89 Total: -104.08 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.07 Total: -28.19 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.12 kcal Total: -75.68 1.61 -74.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343985949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.775 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds