Wall clock time and date at job start Tue Mar 31 2020 15:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.21713 * 2 1 4 4 C 1.52738 * 109.25012 * 240.55632 * 2 1 3 5 5 C 1.53323 * 108.37926 * 290.82587 * 4 2 1 6 6 C 1.52739 * 108.39063 * 290.13483 * 5 4 2 7 7 H 1.09000 * 109.21922 * 290.82991 * 6 5 4 8 8 C 1.52997 * 109.24977 * 171.38544 * 6 5 4 9 9 N 1.46501 * 109.47306 * 62.68919 * 8 6 5 10 10 C 1.34780 * 119.99512 * 185.11571 * 9 8 6 11 11 O 1.21583 * 120.00489 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99357 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99562 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46899 * 180.02562 * 13 12 10 15 15 C 1.50708 * 109.47095 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00167 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99940 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99860 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99762 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47272 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47029 * 120.00252 * 19 17 15 22 22 H 1.48503 * 109.46947 * 239.99795 * 19 17 15 23 23 C 1.50628 * 110.58772 * 51.09962 * 6 5 4 24 24 C 1.38911 * 117.75363 * 162.27559 * 23 6 5 25 25 C 1.37931 * 120.54350 * 179.78078 * 24 23 6 26 26 C 1.38261 * 119.77404 * 359.94182 * 25 24 23 27 27 C 1.37928 * 119.77127 * 0.11395 * 26 25 24 28 28 C 1.37668 * 122.56465 * 342.22200 * 23 6 5 29 29 H 1.09004 * 109.46407 * 300.54775 * 1 2 3 30 30 H 1.08998 * 109.47346 * 60.54045 * 1 2 3 31 31 H 1.08994 * 109.47069 * 180.54972 * 1 2 3 32 32 H 1.09004 * 109.47209 * 179.45364 * 3 2 1 33 33 H 1.09000 * 109.47880 * 299.45663 * 3 2 1 34 34 H 1.09002 * 109.47044 * 59.45449 * 3 2 1 35 35 H 1.08995 * 109.68089 * 50.54264 * 4 2 1 36 36 H 1.09001 * 109.67922 * 171.09651 * 4 2 1 37 37 H 1.08998 * 109.67952 * 170.40915 * 5 4 2 38 38 H 1.08996 * 109.68400 * 49.86145 * 5 4 2 39 39 H 1.09002 * 109.47122 * 302.68417 * 8 6 5 40 40 H 1.09003 * 109.46609 * 182.68934 * 8 6 5 41 41 H 0.96999 * 120.00135 * 5.10709 * 9 8 6 42 42 H 0.96995 * 120.00596 * 0.02562 * 12 10 9 43 43 H 1.08997 * 109.47466 * 60.00241 * 13 12 10 44 44 H 1.09009 * 109.47203 * 299.99634 * 13 12 10 45 45 H 1.08998 * 109.47638 * 60.00244 * 14 13 12 46 46 H 1.09001 * 109.47496 * 299.99761 * 14 13 12 47 47 H 0.96997 * 119.99401 * 179.97438 * 18 17 15 48 48 H 1.08001 * 119.72821 * 359.76388 * 24 23 6 49 49 H 1.08009 * 120.11031 * 179.97438 * 25 24 23 50 50 H 1.07999 * 120.11491 * 180.09571 * 26 25 24 51 51 H 1.08000 * 119.72647 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0337 1.4447 0.0000 4 6 2.0336 -0.7088 -1.2557 5 6 1.7046 -2.2013 -1.1332 6 6 2.5931 -2.8030 -0.0462 7 1 3.6257 -2.8187 -0.3948 8 6 2.1366 -4.2342 0.2435 9 7 2.3029 -5.0529 -0.9600 10 6 1.8682 -6.3287 -0.9724 11 8 1.3386 -6.8002 0.0152 12 7 2.0207 -7.0817 -2.0798 13 6 1.5488 -8.4685 -2.0931 14 6 1.8418 -9.0937 -3.4584 15 6 1.3569 -10.5206 -3.4720 16 1 0.8872 -10.9397 -2.5945 17 6 1.5130 -11.2910 -4.6048 18 7 2.0855 -10.7808 -5.6733 19 14 0.9126 -13.0598 -4.6214 20 1 0.3102 -13.3904 -3.3050 21 1 -0.1073 -13.2264 -5.6879 22 1 2.0572 -13.9686 -4.8848 23 6 2.5080 -1.9889 1.2183 24 6 2.9379 -2.5810 2.3990 25 6 2.8897 -1.8862 3.5896 26 6 2.4108 -0.5894 3.6088 27 6 1.9824 -0.0001 2.4377 28 6 2.0268 -0.6992 1.2382 29 1 -0.3632 0.5224 0.8851 30 1 -0.3634 0.5054 -0.8948 31 1 -0.3633 -1.0276 0.0099 32 1 3.1236 1.4496 0.0098 33 1 1.6761 1.9543 -0.8948 34 1 1.6601 1.9597 0.8851 35 1 1.5389 -0.2948 -2.1343 36 1 3.1119 -0.5765 -1.3445 37 1 1.8987 -2.6992 -2.0832 38 1 0.6565 -2.3251 -0.8608 39 1 1.0868 -4.2284 0.5369 40 1 2.7375 -4.6505 1.0521 41 1 2.7256 -4.6768 -1.7478 42 1 2.4436 -6.7057 -2.8676 43 1 0.4751 -8.4888 -1.9067 44 1 2.0632 -9.0349 -1.3166 45 1 2.9156 -9.0736 -3.6445 46 1 1.3278 -8.5276 -4.2352 47 1 2.1956 -11.3229 -6.4701 48 1 3.3128 -3.5938 2.3847 49 1 3.2254 -2.3536 4.5036 50 1 2.3721 -0.0398 4.5377 51 1 1.6088 1.0132 2.4535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343985951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:00 Heat of formation + Delta-G solvation = -37.113621 kcal Electronic energy + Delta-G solvation = -27834.313231 eV Core-core repulsion = 24117.965187 eV Total energy + Delta-G solvation = -3716.348044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.04389 -39.46253 -37.13375 -36.23592 -34.71344 -33.26964 -32.69023 -30.59713 -30.18156 -29.66368 -27.91587 -27.60734 -24.85643 -23.78444 -23.21696 -23.01590 -21.06959 -20.60963 -20.52100 -18.95065 -18.04178 -16.73448 -16.37856 -16.13676 -15.93371 -15.35327 -15.31250 -14.57264 -14.48621 -14.48348 -14.32606 -14.06465 -13.77543 -13.65289 -13.25782 -13.20359 -12.90916 -12.89741 -12.43798 -12.29701 -12.25850 -12.07369 -12.00121 -11.64621 -11.53170 -11.41288 -11.15778 -11.03180 -10.89281 -10.60193 -10.46014 -10.42219 -10.29391 -9.90943 -9.54003 -9.22801 -8.99086 -8.95792 -8.82082 -8.46800 -8.20972 -6.07963 -4.10227 1.12421 1.15648 3.07767 3.29559 3.37184 3.42900 3.51277 3.64008 4.19115 4.25806 4.39859 4.41299 4.53068 4.58262 4.76378 4.81534 4.86604 4.87832 4.95523 5.06440 5.17394 5.19646 5.27794 5.29269 5.31148 5.37771 5.48638 5.52651 5.60672 5.64328 5.73254 5.73776 5.76123 5.82504 5.87691 5.91031 5.94361 6.15236 6.29801 6.31345 6.33021 6.42741 6.44140 6.63925 6.78145 6.80667 7.03797 7.27265 7.59369 7.65520 7.91754 8.28121 8.47416 8.95172 9.04194 9.54438 11.03773 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.001956 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.175303 B =14308.032528 C =15066.323808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.059 4.059 7 H 0.088 0.912 8 C 0.147 3.853 9 N -0.753 5.753 10 C 0.698 3.302 11 O -0.598 6.598 12 N -0.739 5.739 13 C 0.140 3.860 14 C 0.012 3.988 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.065 4.065 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.059 4.059 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.393 0.607 42 H 0.393 0.607 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.261 0.739 48 H 0.126 0.874 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 28.375 12.773 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.077 4.077 7 H 0.106 0.894 8 C 0.023 3.977 9 N -0.410 5.410 10 C 0.398 3.602 11 O -0.477 6.477 12 N -0.393 5.393 13 C 0.017 3.983 14 C -0.025 4.025 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.066 4.066 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.059 4.059 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.227 0.773 42 H 0.226 0.774 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.143 0.857 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.836 27.848 13.521 31.011 hybrid contribution 0.179 -0.630 -0.743 0.991 sum 2.015 27.217 12.778 30.135 Atomic orbital electron populations 1.21955 0.93544 1.02413 1.01807 1.19438 0.95806 0.94839 0.92462 1.21963 1.01229 0.94719 1.01903 1.21647 1.01277 0.95089 0.96661 1.21688 1.00301 0.95261 0.98236 1.20257 1.00812 0.93262 0.93374 0.89398 1.21236 1.01747 0.87787 0.86963 1.45117 1.66795 1.12012 1.17063 1.16057 0.79445 0.80611 0.84111 1.90889 1.49916 1.72597 1.34317 1.45527 1.64772 1.14868 1.14094 1.21580 0.98251 0.77392 1.01036 1.19331 0.97574 0.95744 0.89851 1.21102 1.39202 0.96391 0.99090 0.92161 1.25006 0.95159 0.98733 0.95503 1.69970 1.43511 1.36717 1.03175 0.86456 0.78483 0.84456 0.78164 1.19563 1.20965 1.20962 1.19360 0.99253 0.93629 0.94356 1.21309 0.99901 1.00150 0.92221 1.21084 1.00047 0.94842 0.97962 1.21071 0.99522 0.95488 0.97998 1.21164 1.00608 0.99894 0.92149 1.19456 0.98532 0.93322 0.94608 0.92603 0.92228 0.92056 0.92472 0.92279 0.92353 0.91184 0.91513 0.91077 0.90837 0.91374 0.91749 0.77315 0.77444 0.92818 0.92830 0.95981 0.95978 0.92946 0.85664 0.86119 0.86300 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.15 37.16 0.30 -0.68 16 2 C -0.03 -0.18 0.63 -155.83 -0.10 -0.28 16 3 C -0.14 -0.84 7.95 37.16 0.30 -0.54 16 4 C -0.11 -0.75 4.69 -26.70 -0.13 -0.88 16 5 C -0.12 -0.93 4.93 -26.70 -0.13 -1.06 16 6 C -0.06 -0.51 2.30 -91.94 -0.21 -0.72 16 7 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 8 C 0.15 1.69 4.68 -4.04 -0.02 1.67 16 9 N -0.75 -9.49 5.27 -65.22 -0.34 -9.84 16 10 C 0.70 12.38 8.57 -86.91 -0.74 11.63 16 11 O -0.60 -13.15 16.34 5.29 0.09 -13.07 16 12 N -0.74 -13.21 5.56 -65.22 -0.36 -13.57 16 13 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.52 9.11 -34.43 -0.31 -14.84 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 19 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.07 -0.61 5.43 -104.62 -0.57 -1.18 16 24 C -0.12 -1.11 9.04 -39.44 -0.36 -1.47 16 25 C -0.12 -1.04 10.05 -39.69 -0.40 -1.44 16 26 C -0.12 -0.98 10.05 -39.69 -0.40 -1.38 16 27 C -0.12 -0.97 8.91 -39.45 -0.35 -1.32 16 28 C -0.06 -0.51 4.70 -104.62 -0.49 -1.00 16 29 H 0.05 0.37 8.07 -51.93 -0.42 -0.04 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.49 6.47 -51.93 -0.34 0.16 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.31 6.41 -51.93 -0.33 -0.02 16 35 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 36 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 37 H 0.07 0.53 7.39 -51.93 -0.38 0.14 16 38 H 0.07 0.66 6.26 -51.93 -0.33 0.33 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.78 6.23 -51.93 -0.32 0.45 16 41 H 0.39 3.83 7.75 -40.82 -0.32 3.51 16 42 H 0.39 5.98 8.49 -40.82 -0.35 5.64 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 48 H 0.13 1.14 6.27 -52.49 -0.33 0.81 16 49 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 50 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 51 H 0.12 0.77 6.33 -52.49 -0.33 0.44 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -32.90 397.95 -11.26 -44.16 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.48 Total: 4.06 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -3.87 Total: -8.74 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.03 Total: -48.90 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.90 -11.26 -44.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343985951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.045 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds