Wall clock time and date at job start Tue Mar 31 2020 15:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.21713 * 2 1 4 4 C 1.52738 * 109.25012 * 240.55632 * 2 1 3 5 5 C 1.53323 * 108.37926 * 290.82587 * 4 2 1 6 6 C 1.52739 * 108.39063 * 290.13483 * 5 4 2 7 7 H 1.09000 * 109.21922 * 290.82991 * 6 5 4 8 8 C 1.52997 * 109.24977 * 171.38544 * 6 5 4 9 9 N 1.46501 * 109.47306 * 62.68919 * 8 6 5 10 10 C 1.34780 * 119.99512 * 185.11571 * 9 8 6 11 11 O 1.21583 * 120.00489 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99357 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99562 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46899 * 180.02562 * 13 12 10 15 15 C 1.50708 * 109.47095 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00167 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99940 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99860 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99762 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47272 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47029 * 120.00252 * 19 17 15 22 22 H 1.48503 * 109.46947 * 239.99795 * 19 17 15 23 23 C 1.50628 * 110.58772 * 51.09962 * 6 5 4 24 24 C 1.38911 * 117.75363 * 162.27559 * 23 6 5 25 25 C 1.37931 * 120.54350 * 179.78078 * 24 23 6 26 26 C 1.38261 * 119.77404 * 359.94182 * 25 24 23 27 27 C 1.37928 * 119.77127 * 0.11395 * 26 25 24 28 28 C 1.37668 * 122.56465 * 342.22200 * 23 6 5 29 29 H 1.09004 * 109.46407 * 300.54775 * 1 2 3 30 30 H 1.08998 * 109.47346 * 60.54045 * 1 2 3 31 31 H 1.08994 * 109.47069 * 180.54972 * 1 2 3 32 32 H 1.09004 * 109.47209 * 179.45364 * 3 2 1 33 33 H 1.09000 * 109.47880 * 299.45663 * 3 2 1 34 34 H 1.09002 * 109.47044 * 59.45449 * 3 2 1 35 35 H 1.08995 * 109.68089 * 50.54264 * 4 2 1 36 36 H 1.09001 * 109.67922 * 171.09651 * 4 2 1 37 37 H 1.08998 * 109.67952 * 170.40915 * 5 4 2 38 38 H 1.08996 * 109.68400 * 49.86145 * 5 4 2 39 39 H 1.09002 * 109.47122 * 302.68417 * 8 6 5 40 40 H 1.09003 * 109.46609 * 182.68934 * 8 6 5 41 41 H 0.96999 * 120.00135 * 5.10709 * 9 8 6 42 42 H 0.96995 * 120.00596 * 0.02562 * 12 10 9 43 43 H 1.08997 * 109.47466 * 60.00241 * 13 12 10 44 44 H 1.09009 * 109.47203 * 299.99634 * 13 12 10 45 45 H 1.08998 * 109.47638 * 60.00244 * 14 13 12 46 46 H 1.09001 * 109.47496 * 299.99761 * 14 13 12 47 47 H 0.96997 * 119.99401 * 179.97438 * 18 17 15 48 48 H 1.08001 * 119.72821 * 359.76388 * 24 23 6 49 49 H 1.08009 * 120.11031 * 179.97438 * 25 24 23 50 50 H 1.07999 * 120.11491 * 180.09571 * 26 25 24 51 51 H 1.08000 * 119.72647 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0337 1.4447 0.0000 4 6 2.0336 -0.7088 -1.2557 5 6 1.7046 -2.2013 -1.1332 6 6 2.5931 -2.8030 -0.0462 7 1 3.6257 -2.8187 -0.3948 8 6 2.1366 -4.2342 0.2435 9 7 2.3029 -5.0529 -0.9600 10 6 1.8682 -6.3287 -0.9724 11 8 1.3386 -6.8002 0.0152 12 7 2.0207 -7.0817 -2.0798 13 6 1.5488 -8.4685 -2.0931 14 6 1.8418 -9.0937 -3.4584 15 6 1.3569 -10.5206 -3.4720 16 1 0.8872 -10.9397 -2.5945 17 6 1.5130 -11.2910 -4.6048 18 7 2.0855 -10.7808 -5.6733 19 14 0.9126 -13.0598 -4.6214 20 1 0.3102 -13.3904 -3.3050 21 1 -0.1073 -13.2264 -5.6879 22 1 2.0572 -13.9686 -4.8848 23 6 2.5080 -1.9889 1.2183 24 6 2.9379 -2.5810 2.3990 25 6 2.8897 -1.8862 3.5896 26 6 2.4108 -0.5894 3.6088 27 6 1.9824 -0.0001 2.4377 28 6 2.0268 -0.6992 1.2382 29 1 -0.3632 0.5224 0.8851 30 1 -0.3634 0.5054 -0.8948 31 1 -0.3633 -1.0276 0.0099 32 1 3.1236 1.4496 0.0098 33 1 1.6761 1.9543 -0.8948 34 1 1.6601 1.9597 0.8851 35 1 1.5389 -0.2948 -2.1343 36 1 3.1119 -0.5765 -1.3445 37 1 1.8987 -2.6992 -2.0832 38 1 0.6565 -2.3251 -0.8608 39 1 1.0868 -4.2284 0.5369 40 1 2.7375 -4.6505 1.0521 41 1 2.7256 -4.6768 -1.7478 42 1 2.4436 -6.7057 -2.8676 43 1 0.4751 -8.4888 -1.9067 44 1 2.0632 -9.0349 -1.3166 45 1 2.9156 -9.0736 -3.6445 46 1 1.3278 -8.5276 -4.2352 47 1 2.1956 -11.3229 -6.4701 48 1 3.3128 -3.5938 2.3847 49 1 3.2254 -2.3536 4.5036 50 1 2.3721 -0.0398 4.5377 51 1 1.6088 1.0132 2.4535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343985951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:57 Heat of formation + Delta-G solvation = -55.885061 kcal Electronic energy + Delta-G solvation = -27835.127222 eV Core-core repulsion = 24117.965187 eV Total energy + Delta-G solvation = -3717.162035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.73668 -40.84019 -37.77468 -37.22663 -36.39691 -34.84975 -34.17179 -31.48076 -31.20815 -30.78254 -28.89040 -28.11991 -26.63519 -24.74811 -23.87190 -23.70290 -22.87862 -21.96544 -21.35513 -19.64601 -19.34257 -18.42941 -17.45952 -17.21898 -16.87727 -16.51851 -16.46076 -16.16277 -15.49625 -15.46309 -15.23776 -15.03656 -14.83871 -14.70793 -14.42605 -14.28821 -14.07202 -13.58849 -13.54012 -13.26855 -13.19439 -12.94425 -12.86960 -12.65006 -12.56294 -12.50737 -12.30137 -12.24222 -12.14663 -12.05331 -11.67740 -11.49510 -11.47741 -11.21575 -11.09726 -10.99060 -10.60423 -10.32706 -9.70050 -9.64059 -9.46598 -8.23633 -6.33483 0.47003 0.50720 1.41415 1.42330 1.55504 1.77233 2.17608 2.41871 2.85911 3.11181 3.37026 3.59381 3.64808 3.74740 3.89068 3.97975 4.17445 4.25184 4.27598 4.35470 4.38821 4.48113 4.52807 4.56437 4.58228 4.60704 4.71657 4.82211 4.86571 4.87624 4.96116 4.98547 5.01435 5.05381 5.12941 5.16717 5.20905 5.25675 5.32361 5.34671 5.37658 5.47456 5.53008 5.57024 5.60719 5.67777 5.68087 5.79530 5.80874 6.05565 6.15824 6.18291 6.79835 7.14514 7.35719 7.60996 8.88459 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.001956 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.175303 B =14308.032528 C =15066.323808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C -0.138 4.138 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.046 4.046 7 H 0.099 0.901 8 C 0.151 3.849 9 N -0.729 5.729 10 C 0.697 3.303 11 O -0.642 6.642 12 N -0.732 5.732 13 C 0.160 3.840 14 C 0.024 3.976 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.006 3.994 18 N -0.926 5.926 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.081 4.081 24 C -0.135 4.135 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.126 4.126 28 C -0.065 4.065 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.411 0.589 42 H 0.407 0.593 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.266 0.734 48 H 0.121 0.879 49 H 0.133 0.867 50 H 0.139 0.861 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 29.750 12.699 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.195 4.195 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.064 4.064 7 H 0.117 0.883 8 C 0.026 3.974 9 N -0.386 5.386 10 C 0.397 3.603 11 O -0.524 6.524 12 N -0.387 5.387 13 C 0.036 3.964 14 C -0.013 4.013 15 C -0.584 4.584 16 H 0.076 0.924 17 C -0.192 4.192 18 N -0.566 5.566 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.081 4.081 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.065 4.065 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.248 0.752 42 H 0.243 0.757 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.074 0.926 48 H 0.139 0.861 49 H 0.151 0.849 50 H 0.157 0.843 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.991 29.284 13.424 32.275 hybrid contribution 0.147 -0.985 -0.673 1.202 sum 2.139 28.299 12.751 31.112 Atomic orbital electron populations 1.21940 0.93561 1.01604 1.02456 1.19475 0.95719 0.95505 0.91852 1.21939 1.01034 0.93837 1.02705 1.21639 1.01611 0.94055 0.97030 1.21687 0.99355 0.96351 0.98055 1.20155 1.01449 0.91113 0.93717 0.88267 1.21279 1.00606 0.89285 0.86186 1.44905 1.65310 1.10186 1.18213 1.16166 0.79199 0.81762 0.83180 1.90862 1.51890 1.73845 1.35814 1.45196 1.64923 1.13597 1.15012 1.21065 0.97425 0.79203 0.98704 1.19129 0.96300 0.94862 0.91047 1.21497 1.39590 0.97963 0.99309 0.92375 1.25872 0.95165 1.03149 0.95064 1.70064 1.44279 1.38440 1.03776 0.85393 0.78160 0.79079 0.78388 1.19040 1.20200 1.20207 1.19465 1.00067 0.94242 0.94354 1.21422 1.00681 1.00282 0.92934 1.21316 1.00189 0.95360 0.98176 1.21369 0.98812 0.95335 0.98966 1.21432 1.00277 1.00681 0.91967 1.19687 0.98123 0.93146 0.95585 0.92382 0.91177 0.93563 0.92734 0.91333 0.91752 0.90125 0.91148 0.90352 0.92052 0.93282 0.92332 0.75213 0.75717 0.93951 0.93948 0.97226 0.97210 0.92553 0.86100 0.84944 0.84292 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.15 71.98 0.59 -1.16 16 2 C -0.03 -0.32 0.63 -53.04 -0.03 -0.35 16 3 C -0.14 -1.32 7.95 71.98 0.57 -0.75 16 4 C -0.11 -1.26 4.69 30.62 0.14 -1.12 16 5 C -0.12 -1.72 4.93 30.62 0.15 -1.57 16 6 C -0.05 -0.76 2.30 -11.65 -0.03 -0.79 16 7 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 8 C 0.15 3.45 4.68 86.38 0.40 3.86 16 9 N -0.73 -17.91 5.27 -478.53 -2.52 -20.43 16 10 C 0.70 24.69 8.57 179.05 1.53 26.22 16 11 O -0.64 -28.70 16.34 -3.98 -0.06 -28.77 16 12 N -0.73 -26.08 5.56 -478.53 -2.66 -28.74 16 13 C 0.16 7.10 5.61 86.38 0.48 7.59 16 14 C 0.02 1.23 5.09 29.85 0.15 1.38 16 15 C -0.55 -30.74 9.11 25.60 0.23 -30.51 16 16 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 17 C 0.01 0.35 5.46 84.66 0.46 0.81 16 18 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 19 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 C -0.08 -1.46 5.43 -19.86 -0.11 -1.57 16 24 C -0.14 -2.56 9.04 22.36 0.20 -2.35 16 25 C -0.13 -2.21 10.05 22.20 0.22 -1.99 16 26 C -0.13 -1.86 10.05 22.20 0.22 -1.64 16 27 C -0.13 -1.83 8.91 22.36 0.20 -1.63 16 28 C -0.07 -1.04 4.70 -19.86 -0.09 -1.14 16 29 H 0.06 0.69 8.07 -2.39 -0.02 0.68 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.72 6.47 -2.39 -0.02 0.71 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.54 6.41 -2.39 -0.02 0.52 16 35 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 36 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 37 H 0.08 1.02 7.39 -2.39 -0.02 1.00 16 38 H 0.06 1.07 6.26 -2.39 -0.01 1.06 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.44 6.23 -2.39 -0.01 1.42 16 41 H 0.41 7.34 7.75 -92.71 -0.72 6.62 16 42 H 0.41 12.11 8.49 -92.71 -0.79 11.32 16 43 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 48 H 0.12 2.28 6.27 -2.91 -0.02 2.26 16 49 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 50 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 51 H 0.14 1.46 6.33 -2.91 -0.02 1.44 16 Total: -1.00 -70.53 397.95 1.80 -68.72 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.57 Total: 24.02 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 5.31 Total: -6.70 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -4.90 Total: -103.22 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.06 Total: -28.77 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.53 1.80 -68.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343985951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.840 kcal (2) G-P(sol) polarization free energy of solvation -70.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds