Wall clock time and date at job start Tue Mar 31 2020 15:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47399 * 2 1 4 4 C 1.38228 * 120.00195 * 240.21230 * 3 2 1 5 5 C 1.38238 * 120.00114 * 180.26174 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.50218 * 5 4 3 7 7 C 1.38235 * 120.00220 * 0.28720 * 6 5 4 8 8 C 1.38234 * 119.99720 * 60.00015 * 3 2 1 9 9 C 1.52998 * 109.47155 * 120.00400 * 2 1 3 10 10 C 1.53000 * 109.47396 * 59.99777 * 9 2 1 11 11 C 1.53004 * 109.46973 * 60.00123 * 10 9 2 12 12 N 1.46503 * 109.46913 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99500 * 274.99710 * 12 11 10 14 14 O 1.21585 * 120.00149 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99683 * 180.02562 * 13 12 11 16 16 C 1.46491 * 120.00028 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47303 * 179.97438 * 16 15 13 18 18 C 1.50705 * 109.47169 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00121 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99796 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00285 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00023 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46897 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46829 * 119.99998 * 22 20 18 25 25 H 1.48501 * 109.47554 * 240.00415 * 22 20 18 26 26 C 1.52998 * 109.46959 * 300.00145 * 11 10 9 27 27 C 1.53000 * 109.47396 * 60.00114 * 26 11 10 28 28 H 1.08998 * 109.46817 * 59.99980 * 1 2 3 29 29 H 1.08997 * 109.47545 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46831 * 299.99909 * 1 2 3 31 31 H 1.08004 * 120.00270 * 0.03576 * 4 3 2 32 32 H 1.08002 * 120.00519 * 179.78838 * 5 4 3 33 33 H 1.07999 * 120.00009 * 180.25939 * 6 5 4 34 34 H 1.07996 * 120.00471 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.00294 * 0.02562 * 8 3 2 36 36 H 1.08996 * 109.47339 * 179.97438 * 9 2 1 37 37 H 1.09001 * 109.46999 * 299.99588 * 9 2 1 38 38 H 1.08996 * 109.46858 * 300.00272 * 10 9 2 39 39 H 1.08999 * 109.47733 * 180.02562 * 10 9 2 40 40 H 1.08996 * 109.47207 * 60.00362 * 11 10 9 41 41 H 0.96997 * 120.00292 * 95.00044 * 12 11 10 42 42 H 0.97005 * 119.99809 * 359.97438 * 15 13 12 43 43 H 1.08997 * 109.47293 * 299.99607 * 16 15 13 44 44 H 1.08997 * 109.47680 * 59.99673 * 16 15 13 45 45 H 1.08995 * 109.47371 * 300.00242 * 17 16 15 46 46 H 1.08999 * 109.47140 * 60.00097 * 17 16 15 47 47 H 0.96998 * 120.00555 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.46871 * 299.99641 * 26 11 10 49 49 H 1.09001 * 109.46999 * 180.02562 * 26 11 10 50 50 H 1.08993 * 109.47090 * 179.97438 * 27 26 11 51 51 H 1.08996 * 109.46858 * 59.99728 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8235 1.8742 -1.0389 5 6 3.2888 3.1759 -1.0362 6 6 2.9544 4.0271 0.0004 7 6 2.1597 3.5750 1.0371 8 6 1.6984 2.2719 1.0368 9 6 2.0400 -0.7213 1.2492 10 6 1.5300 -2.1638 1.2492 11 6 2.0400 -2.8850 -0.0001 12 7 1.5511 -4.2661 -0.0004 13 6 2.2276 -5.2205 0.6690 14 8 3.2432 -4.9352 1.2735 15 7 1.7781 -6.4911 0.6684 16 6 2.5130 -7.5283 1.3964 17 6 1.7953 -8.8700 1.2357 18 6 2.5517 -9.9372 1.9842 19 1 3.4537 -9.6838 2.5212 20 6 2.0914 -11.2368 1.9843 21 7 0.9926 -11.5454 1.3308 22 14 3.0293 -12.5598 2.9115 23 1 4.2230 -11.9587 3.5588 24 1 2.1499 -13.1540 3.9502 25 1 3.4601 -13.6181 1.9630 26 6 1.5300 -2.1637 -1.2493 27 6 2.0400 -0.7212 -1.2493 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0811 1.2104 -1.8510 32 1 3.9097 3.5292 -1.8461 33 1 3.3145 5.0453 0.0004 34 1 1.8988 4.2400 1.8472 35 1 1.0778 1.9186 1.8470 36 1 3.1299 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1392 38 1 0.4400 -2.1638 1.2492 39 1 1.8929 -2.6776 2.1393 40 1 3.1299 -2.8851 -0.0001 41 1 0.7407 -4.4937 -0.4824 42 1 0.9676 -6.7186 0.1863 43 1 3.5238 -7.6064 0.9961 44 1 2.5601 -7.2663 2.4534 45 1 0.7847 -8.7917 1.6363 46 1 1.7479 -9.1324 0.1788 47 1 0.6690 -12.4598 1.3305 48 1 0.4399 -2.1638 -1.2493 49 1 1.8929 -2.6778 -2.1393 50 1 1.6770 -0.2075 -2.1394 51 1 3.1299 -0.7213 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343988461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:35 Heat of formation + Delta-G solvation = -36.344857 kcal Electronic energy + Delta-G solvation = -27643.760333 eV Core-core repulsion = 23927.445624 eV Total energy + Delta-G solvation = -3716.314708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83743 -39.55183 -38.16808 -35.16842 -34.42159 -32.85324 -31.79794 -31.67264 -30.68411 -29.68046 -28.90177 -26.72497 -24.66823 -23.72070 -23.23348 -21.93098 -21.31518 -20.80992 -20.40428 -18.96624 -17.75406 -17.47704 -16.42494 -16.09671 -15.73043 -15.37010 -15.12623 -14.77811 -14.62769 -14.49880 -14.21478 -14.05272 -13.76454 -13.61985 -13.34394 -13.11347 -12.92907 -12.81203 -12.45466 -12.30655 -12.27247 -11.99427 -11.74616 -11.54750 -11.26415 -11.22511 -11.15591 -11.03051 -10.68339 -10.60055 -10.47872 -10.31545 -10.27488 -9.86182 -9.52598 -9.22227 -9.19604 -8.95130 -8.92683 -8.46834 -8.20958 -6.07846 -4.10221 1.08611 1.12034 3.08324 3.29559 3.37184 3.42865 3.50210 3.64571 4.24207 4.30098 4.41736 4.47564 4.70281 4.71165 4.71910 4.83044 4.88525 4.93836 4.98554 5.07957 5.17840 5.24753 5.27373 5.29381 5.31872 5.40366 5.49852 5.57361 5.62542 5.72453 5.75284 5.76863 5.85348 5.88894 5.92595 6.02579 6.13939 6.21948 6.23803 6.30390 6.35484 6.40185 6.42950 6.72104 6.73446 6.81271 7.04890 7.30490 7.59829 7.65610 7.91776 8.28418 8.49436 8.95339 9.06153 9.54516 11.03856 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.001730 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.270991 B =16177.979716 C =16331.131591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.022 4.022 3 C -0.065 4.065 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.129 4.129 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.100 4.100 10 C -0.132 4.132 11 C 0.166 3.834 12 N -0.750 5.750 13 C 0.698 3.302 14 O -0.598 6.598 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.012 3.988 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.128 4.128 27 C -0.105 4.105 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.261 0.739 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 31.101 -6.804 31.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 C -0.065 4.065 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.147 4.147 7 C -0.138 4.138 8 C -0.134 4.134 9 C -0.138 4.138 10 C -0.171 4.171 11 C 0.061 3.939 12 N -0.406 5.406 13 C 0.398 3.602 14 O -0.477 6.477 15 N -0.393 5.393 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.166 4.166 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.560 31.168 -6.263 31.829 hybrid contribution -0.360 -0.964 0.047 1.031 sum -1.920 30.203 -6.216 30.896 Atomic orbital electron populations 1.21983 0.93610 1.02402 1.01840 1.19540 0.95841 0.90616 0.96227 1.19859 0.97002 0.95123 0.94468 1.21220 0.98093 0.95936 0.98723 1.21162 0.99952 0.94043 0.98591 1.21133 0.99043 0.99689 0.94824 1.21136 0.98140 0.95929 0.98548 1.21013 1.00316 0.93602 0.98424 1.21558 1.01114 0.94851 0.96325 1.22008 1.00974 0.94917 0.99152 1.20717 0.99800 0.79394 0.94012 1.45233 1.30203 1.08034 1.57113 1.16092 0.83240 0.80920 0.79940 1.90881 1.26165 1.81633 1.49013 1.45545 1.30355 1.07047 1.56393 1.21565 0.95188 0.86834 0.94642 1.19334 0.96120 0.89220 0.97870 1.21101 1.10149 0.92827 1.31745 0.92165 1.24996 0.95071 0.98736 0.95536 1.69964 1.21920 1.19241 1.42237 0.86461 0.79979 0.81550 0.79601 1.19569 1.20964 1.20955 1.21868 1.01497 0.95536 0.97729 1.21621 1.01084 0.94485 0.97122 0.92662 0.91416 0.92548 0.85592 0.86267 0.86403 0.86284 0.86165 0.91509 0.91622 0.91589 0.91020 0.89631 0.77458 0.77468 0.92854 0.92865 0.95980 0.95981 0.92949 0.91063 0.91138 0.91192 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 7.59 37.16 0.28 -0.69 16 2 C -0.02 -0.17 0.60 -155.66 -0.09 -0.26 16 3 C -0.06 -0.52 4.76 -104.63 -0.50 -1.02 16 4 C -0.12 -0.95 8.98 -39.59 -0.36 -1.31 16 5 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 6 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 7 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 8 C -0.12 -0.91 8.71 -39.58 -0.34 -1.26 16 9 C -0.10 -0.90 4.54 -26.73 -0.12 -1.02 16 10 C -0.13 -1.38 5.22 -26.73 -0.14 -1.52 16 11 C 0.17 1.83 2.45 -67.93 -0.17 1.66 16 12 N -0.75 -9.40 5.08 -58.67 -0.30 -9.70 16 13 C 0.70 12.27 8.53 -86.91 -0.74 11.53 16 14 O -0.60 -12.93 16.01 5.29 0.08 -12.85 16 15 N -0.74 -13.24 5.56 -65.23 -0.36 -13.60 16 16 C 0.14 3.07 5.61 -4.05 -0.02 3.05 16 17 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 19 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 22 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C -0.13 -1.01 5.12 -26.73 -0.14 -1.14 16 27 C -0.11 -0.76 3.39 -26.73 -0.09 -0.85 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.46 4.81 -51.93 -0.25 0.21 16 30 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 31 H 0.13 0.83 5.90 -52.48 -0.31 0.52 16 32 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.12 0.83 7.10 -52.49 -0.37 0.46 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.55 7.39 -51.93 -0.38 0.17 16 38 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 41 H 0.39 3.83 8.62 -40.82 -0.35 3.48 16 42 H 0.39 6.01 8.49 -40.82 -0.35 5.67 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.44 7.50 -51.93 -0.39 0.05 16 51 H 0.07 0.53 7.52 -51.93 -0.39 0.14 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -32.76 396.60 -11.49 -44.25 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.43 Total: 4.80 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -4.17 Total: -9.88 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.08 Total: -48.79 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.76 -11.49 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343988461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.906 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds