Wall clock time and date at job start Tue Mar 31 2020 15:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47399 * 2 1 4 4 C 1.38228 * 120.00195 * 240.21230 * 3 2 1 5 5 C 1.38238 * 120.00114 * 180.26174 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.50218 * 5 4 3 7 7 C 1.38235 * 120.00220 * 0.28720 * 6 5 4 8 8 C 1.38234 * 119.99720 * 60.00015 * 3 2 1 9 9 C 1.52998 * 109.47155 * 120.00400 * 2 1 3 10 10 C 1.53000 * 109.47396 * 59.99777 * 9 2 1 11 11 C 1.53004 * 109.46973 * 60.00123 * 10 9 2 12 12 N 1.46503 * 109.46913 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99500 * 274.99710 * 12 11 10 14 14 O 1.21585 * 120.00149 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99683 * 180.02562 * 13 12 11 16 16 C 1.46491 * 120.00028 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47303 * 179.97438 * 16 15 13 18 18 C 1.50705 * 109.47169 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00121 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99796 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00285 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00023 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46897 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46829 * 119.99998 * 22 20 18 25 25 H 1.48501 * 109.47554 * 240.00415 * 22 20 18 26 26 C 1.52998 * 109.46959 * 300.00145 * 11 10 9 27 27 C 1.53000 * 109.47396 * 60.00114 * 26 11 10 28 28 H 1.08998 * 109.46817 * 59.99980 * 1 2 3 29 29 H 1.08997 * 109.47545 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46831 * 299.99909 * 1 2 3 31 31 H 1.08004 * 120.00270 * 0.03576 * 4 3 2 32 32 H 1.08002 * 120.00519 * 179.78838 * 5 4 3 33 33 H 1.07999 * 120.00009 * 180.25939 * 6 5 4 34 34 H 1.07996 * 120.00471 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.00294 * 0.02562 * 8 3 2 36 36 H 1.08996 * 109.47339 * 179.97438 * 9 2 1 37 37 H 1.09001 * 109.46999 * 299.99588 * 9 2 1 38 38 H 1.08996 * 109.46858 * 300.00272 * 10 9 2 39 39 H 1.08999 * 109.47733 * 180.02562 * 10 9 2 40 40 H 1.08996 * 109.47207 * 60.00362 * 11 10 9 41 41 H 0.96997 * 120.00292 * 95.00044 * 12 11 10 42 42 H 0.97005 * 119.99809 * 359.97438 * 15 13 12 43 43 H 1.08997 * 109.47293 * 299.99607 * 16 15 13 44 44 H 1.08997 * 109.47680 * 59.99673 * 16 15 13 45 45 H 1.08995 * 109.47371 * 300.00242 * 17 16 15 46 46 H 1.08999 * 109.47140 * 60.00097 * 17 16 15 47 47 H 0.96998 * 120.00555 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.46871 * 299.99641 * 26 11 10 49 49 H 1.09001 * 109.46999 * 180.02562 * 26 11 10 50 50 H 1.08993 * 109.47090 * 179.97438 * 27 26 11 51 51 H 1.08996 * 109.46858 * 59.99728 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8235 1.8742 -1.0389 5 6 3.2888 3.1759 -1.0362 6 6 2.9544 4.0271 0.0004 7 6 2.1597 3.5750 1.0371 8 6 1.6984 2.2719 1.0368 9 6 2.0400 -0.7213 1.2492 10 6 1.5300 -2.1638 1.2492 11 6 2.0400 -2.8850 -0.0001 12 7 1.5511 -4.2661 -0.0004 13 6 2.2276 -5.2205 0.6690 14 8 3.2432 -4.9352 1.2735 15 7 1.7781 -6.4911 0.6684 16 6 2.5130 -7.5283 1.3964 17 6 1.7953 -8.8700 1.2357 18 6 2.5517 -9.9372 1.9842 19 1 3.4537 -9.6838 2.5212 20 6 2.0914 -11.2368 1.9843 21 7 0.9926 -11.5454 1.3308 22 14 3.0293 -12.5598 2.9115 23 1 4.2230 -11.9587 3.5588 24 1 2.1499 -13.1540 3.9502 25 1 3.4601 -13.6181 1.9630 26 6 1.5300 -2.1637 -1.2493 27 6 2.0400 -0.7212 -1.2493 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0811 1.2104 -1.8510 32 1 3.9097 3.5292 -1.8461 33 1 3.3145 5.0453 0.0004 34 1 1.8988 4.2400 1.8472 35 1 1.0778 1.9186 1.8470 36 1 3.1299 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1392 38 1 0.4400 -2.1638 1.2492 39 1 1.8929 -2.6776 2.1393 40 1 3.1299 -2.8851 -0.0001 41 1 0.7407 -4.4937 -0.4824 42 1 0.9676 -6.7186 0.1863 43 1 3.5238 -7.6064 0.9961 44 1 2.5601 -7.2663 2.4534 45 1 0.7847 -8.7917 1.6363 46 1 1.7479 -9.1324 0.1788 47 1 0.6690 -12.4598 1.3305 48 1 0.4399 -2.1638 -1.2493 49 1 1.8929 -2.6778 -2.1393 50 1 1.6770 -0.2075 -2.1394 51 1 3.1299 -0.7213 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343988461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:34 Heat of formation + Delta-G solvation = -55.109646 kcal Electronic energy + Delta-G solvation = -27644.574035 eV Core-core repulsion = 23927.445624 eV Total energy + Delta-G solvation = -3717.128411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62002 -40.73165 -38.95457 -36.66942 -35.71196 -34.80719 -32.80235 -32.33039 -31.33256 -31.21647 -29.76652 -27.55876 -26.47922 -24.39311 -24.05593 -22.93808 -22.55649 -21.97658 -21.63731 -19.85900 -18.96975 -18.40631 -18.05786 -17.34911 -16.59777 -16.49305 -16.38119 -15.96794 -15.69151 -15.37945 -15.35364 -15.09092 -14.97189 -14.57527 -14.30865 -14.26501 -14.01589 -13.69543 -13.55232 -13.19702 -13.09571 -13.02943 -12.94571 -12.67274 -12.51264 -12.36676 -12.25571 -12.15199 -11.95075 -11.88380 -11.66652 -11.50639 -11.35190 -11.19314 -11.08557 -11.00467 -10.60380 -10.24904 -9.74789 -9.67643 -9.51712 -8.23750 -6.33817 0.52903 0.56835 1.41274 1.42169 1.55345 1.80137 2.20755 2.41783 2.94420 3.11044 3.36916 3.65169 3.70301 3.74622 4.10494 4.16393 4.21647 4.27449 4.28288 4.35769 4.39402 4.42668 4.49626 4.52814 4.55467 4.67848 4.70395 4.76487 4.83230 4.87346 4.97204 4.98672 5.09367 5.12499 5.15917 5.20785 5.23944 5.28283 5.29286 5.33875 5.41214 5.52759 5.54912 5.60244 5.66770 5.69242 5.70028 5.80115 5.82134 6.10802 6.18245 6.19703 6.79409 7.18592 7.35575 7.65314 8.88295 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.001730 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.270991 B =16177.979716 C =16331.131591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.015 4.015 3 C -0.075 4.075 4 C -0.133 4.133 5 C -0.129 4.129 6 C -0.137 4.137 7 C -0.129 4.129 8 C -0.128 4.128 9 C -0.095 4.095 10 C -0.125 4.125 11 C 0.164 3.836 12 N -0.729 5.729 13 C 0.697 3.303 14 O -0.641 6.641 15 N -0.735 5.735 16 C 0.161 3.839 17 C 0.023 3.977 18 C -0.546 4.546 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.118 4.118 27 C -0.103 4.103 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.057 0.943 41 H 0.410 0.590 42 H 0.407 0.593 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.009 0.991 46 H 0.009 0.991 47 H 0.266 0.734 48 H 0.090 0.910 49 H 0.076 0.924 50 H 0.087 0.913 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 32.169 -7.579 33.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 C -0.075 4.075 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.147 4.147 8 C -0.146 4.146 9 C -0.133 4.133 10 C -0.164 4.164 11 C 0.059 3.941 12 N -0.384 5.384 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.389 5.389 16 C 0.037 3.963 17 C -0.014 4.014 18 C -0.585 4.585 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.156 4.156 27 C -0.141 4.141 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.247 0.753 42 H 0.242 0.758 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.074 0.926 48 H 0.108 0.892 49 H 0.094 0.906 50 H 0.106 0.894 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.254 32.271 -7.077 33.114 hybrid contribution -0.161 -1.213 0.280 1.255 sum -2.416 31.058 -6.797 31.884 Atomic orbital electron populations 1.21972 0.92736 1.02680 1.02275 1.19457 0.96419 0.90294 0.95330 1.19942 0.97449 0.95260 0.94837 1.21425 0.98142 0.96458 0.99069 1.21443 1.00057 0.94019 0.99181 1.21426 0.98832 1.00607 0.94659 1.21403 0.98092 0.96096 0.99148 1.21191 1.00705 0.94004 0.98697 1.21495 1.00104 0.94033 0.97691 1.21919 1.01750 0.95422 0.97273 1.20868 0.98408 0.78652 0.96168 1.45084 1.30080 1.07697 1.55583 1.16219 0.82981 0.81183 0.79949 1.90855 1.28248 1.82273 1.50921 1.45224 1.30655 1.06690 1.56363 1.21037 0.94529 0.86445 0.94310 1.19136 0.95419 0.90344 0.96509 1.21496 1.10538 0.94099 1.32337 0.92406 1.25857 0.95945 1.01008 0.96312 1.70059 1.23179 1.20050 1.43233 0.85397 0.78720 0.78531 0.78388 1.19080 1.20186 1.20164 1.21818 1.02539 0.95412 0.95803 1.21625 1.00779 0.94003 0.97681 0.92019 0.91107 0.92427 0.84668 0.84700 0.84728 0.84834 0.85613 0.93110 0.91157 0.89999 0.94475 0.92449 0.75340 0.75789 0.94037 0.94081 0.97229 0.97216 0.92551 0.89160 0.90562 0.89411 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.59 71.98 0.55 -1.06 16 2 C -0.01 -0.20 0.60 -52.93 -0.03 -0.24 16 3 C -0.07 -1.12 4.76 -19.87 -0.09 -1.22 16 4 C -0.13 -1.91 8.98 22.27 0.20 -1.71 16 5 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 6 C -0.14 -1.79 10.05 22.27 0.22 -1.57 16 7 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 8 C -0.13 -1.89 8.71 22.27 0.19 -1.70 16 9 C -0.10 -1.68 4.54 30.59 0.14 -1.54 16 10 C -0.12 -2.60 5.22 30.60 0.16 -2.44 16 11 C 0.16 3.53 2.45 44.99 0.11 3.64 16 12 N -0.73 -17.62 5.08 -457.80 -2.33 -19.95 16 13 C 0.70 24.59 8.53 179.05 1.53 26.12 16 14 O -0.64 -28.49 16.01 -3.98 -0.06 -28.55 16 15 N -0.73 -26.30 5.56 -478.55 -2.66 -28.97 16 16 C 0.16 7.18 5.61 86.38 0.48 7.67 16 17 C 0.02 1.20 5.09 29.85 0.15 1.35 16 18 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 19 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 20 C 0.01 0.42 5.46 84.65 0.46 0.89 16 21 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 22 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 C -0.12 -1.60 5.12 30.59 0.16 -1.45 16 27 C -0.10 -1.29 3.39 30.60 0.10 -1.19 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.76 4.81 -2.39 -0.01 0.75 16 30 H 0.06 0.66 7.39 -2.39 -0.02 0.64 16 31 H 0.14 1.57 5.90 -2.91 -0.02 1.56 16 32 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 33 H 0.13 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.13 1.62 7.10 -2.91 -0.02 1.60 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.16 7.39 -2.39 -0.02 1.15 16 38 H 0.08 1.43 6.43 -2.39 -0.02 1.42 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 41 H 0.41 7.15 8.62 -92.71 -0.80 6.35 16 42 H 0.41 12.20 8.49 -92.70 -0.79 11.41 16 43 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.09 0.94 6.43 -2.39 -0.02 0.92 16 49 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.09 0.85 7.50 -2.39 -0.02 0.83 16 51 H 0.06 0.90 7.52 -2.39 -0.02 0.88 16 Total: -1.00 -71.16 396.60 1.62 -69.54 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.65 Total: 24.17 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.01 Total: -8.17 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.70 Total: -102.98 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.06 Total: -28.55 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -71.16 1.62 -69.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343988461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.430 kcal (2) G-P(sol) polarization free energy of solvation -71.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds