Wall clock time and date at job start Tue Mar 31 2020 16:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46848 * 110.99649 * 2 1 4 4 C 1.53040 * 109.51935 * 185.83751 * 3 2 1 5 5 C 1.53121 * 109.27918 * 300.81875 * 4 3 2 6 6 C 1.53114 * 109.15968 * 57.65612 * 5 4 3 7 7 C 1.52995 * 109.50034 * 182.40279 * 6 5 4 8 8 C 1.53003 * 109.50323 * 62.28540 * 6 5 4 9 9 C 1.46847 * 110.99804 * 124.20609 * 2 1 3 10 10 H 1.09001 * 109.46626 * 294.16722 * 9 2 1 11 11 C 1.52995 * 109.46545 * 54.14820 * 9 2 1 12 12 N 1.46505 * 109.47509 * 188.83876 * 11 9 2 13 13 C 1.34777 * 120.00124 * 185.73001 * 12 11 9 14 14 O 1.21584 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.47640 * 119.99738 * 179.97438 * 13 12 11 16 16 C 1.40014 * 119.89243 * 179.97438 * 15 13 12 17 17 C 1.36318 * 120.10635 * 180.02562 * 16 15 13 18 18 C 1.40886 * 119.88866 * 359.97438 * 17 16 15 19 19 C 1.41116 * 120.09999 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00002 * 151.42945 * 19 18 17 21 21 C 1.40230 * 119.99899 * 331.42905 * 19 18 17 22 22 N 1.30642 * 119.99983 * 347.47662 * 21 19 18 23 23 Si 1.86796 * 119.99782 * 167.47489 * 21 19 18 24 24 H 1.48504 * 109.47391 * 60.00182 * 23 21 19 25 25 H 1.48497 * 109.47247 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47375 * 300.00199 * 23 21 19 27 27 C 1.40887 * 119.79677 * 0.02562 * 18 17 16 28 28 C 1.36319 * 119.88884 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47330 * 286.99154 * 1 2 3 30 30 H 1.08995 * 109.47189 * 47.00052 * 1 2 3 31 31 H 1.09002 * 109.46686 * 166.99811 * 1 2 3 32 32 H 1.08999 * 109.46023 * 305.84932 * 3 2 1 33 33 H 1.09001 * 109.46535 * 65.82134 * 3 2 1 34 34 H 1.09001 * 109.50039 * 60.76051 * 4 3 2 35 35 H 1.09005 * 109.49814 * 180.87664 * 4 3 2 36 36 H 1.09006 * 109.51828 * 177.56449 * 5 4 3 37 37 H 1.09004 * 109.51967 * 297.74969 * 5 4 3 38 38 H 1.09003 * 109.47260 * 189.41402 * 7 6 5 39 39 H 1.08999 * 109.47485 * 309.41216 * 7 6 5 40 40 H 1.09003 * 109.47055 * 69.41690 * 7 6 5 41 41 H 1.08990 * 109.47504 * 300.19574 * 8 6 5 42 42 H 1.09003 * 109.46774 * 60.19681 * 8 6 5 43 43 H 1.09002 * 109.46822 * 180.19591 * 8 6 5 44 44 H 1.09002 * 109.47264 * 68.83317 * 11 9 2 45 45 H 1.09007 * 109.47024 * 308.83952 * 11 9 2 46 46 H 0.96998 * 119.99295 * 5.72959 * 12 11 9 47 47 H 1.08003 * 119.95104 * 359.72183 * 16 15 13 48 48 H 1.08001 * 120.05273 * 179.97438 * 17 16 15 49 49 H 0.96999 * 120.00068 * 179.97438 * 22 21 19 50 50 H 1.08001 * 120.05263 * 180.02562 * 27 18 17 51 51 H 1.08002 * 119.94257 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 3.5181 -0.8714 1.0210 7 6 4.0681 -1.6556 2.2140 8 6 3.8876 -1.5903 -0.2781 9 6 1.9952 -0.7707 1.1338 10 1 1.7326 -0.2707 2.0661 11 6 1.3892 -2.1754 1.1205 12 7 1.7449 -2.8726 2.3590 13 6 1.4173 -4.1700 2.5200 14 8 0.8261 -4.7617 1.6376 15 6 1.7763 -4.8726 3.7679 16 6 1.4344 -6.2203 3.9330 17 6 1.7633 -6.8731 5.0836 18 6 2.4488 -6.1897 6.1072 19 6 2.7919 -6.8613 7.2999 20 1 3.6601 -6.5524 7.8630 21 6 2.0054 -7.9298 7.7540 22 7 0.8326 -8.1499 7.2222 23 14 2.6349 -9.0386 9.1192 24 1 2.8805 -8.2297 10.3402 25 1 1.6230 -10.0848 9.4134 26 1 3.9018 -9.6829 8.6892 27 6 2.7906 -4.8336 5.9364 28 6 2.4566 -4.1889 4.7827 29 1 -0.3634 0.3003 0.9828 30 1 -0.3633 0.7008 -0.7516 31 1 -0.3633 -1.0014 -0.2312 32 1 1.5634 1.9257 -0.8330 33 1 1.7323 1.8609 0.9376 34 1 3.7813 0.8567 -1.0906 35 1 3.9098 2.3513 -0.1310 36 1 5.1998 0.4716 0.8906 37 1 3.8886 1.0356 1.9561 38 1 3.7752 -2.7020 2.1271 39 1 5.1555 -1.5826 2.2267 40 1 3.6652 -1.2411 3.1381 41 1 3.4970 -1.0298 -1.1274 42 1 4.9724 -1.6616 -0.3579 43 1 3.4569 -2.5915 -0.2744 44 1 1.7774 -2.7306 0.2666 45 1 0.3043 -2.1024 1.0435 46 1 2.2162 -2.4003 3.0631 47 1 0.9049 -6.7422 3.1495 48 1 1.4987 -7.9126 5.2102 49 1 0.2888 -8.8892 7.5360 50 1 3.3165 -4.3058 6.7183 51 1 2.7186 -3.1495 4.6507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344593441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:58 Heat of formation + Delta-G solvation = -17.899213 kcal Electronic energy + Delta-G solvation = -29010.681782 eV Core-core repulsion = 25295.166937 eV Total energy + Delta-G solvation = -3715.514845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.59079 -38.82250 -37.07973 -35.30825 -34.53101 -33.83921 -31.96680 -30.14428 -29.57855 -28.19127 -27.30769 -26.77944 -26.12384 -24.84790 -22.07363 -21.61038 -21.50518 -20.72924 -19.65225 -18.51455 -17.51080 -16.84908 -15.94672 -15.84116 -15.68510 -15.34885 -14.89671 -14.48246 -14.35123 -14.00684 -13.79360 -13.55844 -13.35538 -13.23278 -13.05279 -12.74150 -12.49624 -12.48260 -12.22339 -12.17792 -11.94078 -11.83681 -11.79070 -11.49294 -11.39532 -11.35418 -11.22326 -11.08192 -10.96785 -10.61275 -10.56791 -10.31947 -10.14301 -10.03794 -9.50646 -9.37961 -8.98249 -8.49638 -8.43860 -7.69760 -7.51013 -6.95706 -4.59970 2.24226 2.93934 2.96575 2.99194 3.03087 3.44228 3.76686 3.90786 4.08613 4.44862 4.53366 4.60817 4.64663 4.83215 5.02641 5.05591 5.20367 5.24500 5.30676 5.34151 5.42011 5.49468 5.56623 5.61843 5.67380 5.71057 5.73906 5.82236 5.85024 5.89889 5.94230 5.96300 6.03539 6.06863 6.17530 6.23121 6.29604 6.37115 6.48316 6.79316 6.83230 6.85327 6.88536 7.02266 7.06523 7.11753 7.45306 7.60763 7.79117 7.88383 8.07115 8.25251 8.44951 8.64893 8.76177 9.08939 9.96445 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.002487 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.233650 B =11255.736449 C =11794.438498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.057 3.943 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.054 4.054 7 C -0.161 4.161 8 C -0.137 4.137 9 C 0.086 3.914 10 H 0.044 0.956 11 C 0.124 3.876 12 N -0.742 5.742 13 C 0.569 3.431 14 O -0.572 6.572 15 C -0.277 4.277 16 C -0.038 4.038 17 C -0.176 4.176 18 C 0.130 3.870 19 C -0.447 4.447 20 H 0.083 0.917 21 C 0.072 3.928 22 N -0.778 5.778 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.231 4.231 28 C -0.052 4.052 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.398 0.602 47 H 0.101 0.899 48 H 0.121 0.879 49 H 0.287 0.713 50 H 0.097 0.903 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 15.660 -9.442 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.071 4.071 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.054 4.054 7 C -0.219 4.219 8 C -0.194 4.194 9 C -0.023 4.023 10 H 0.062 0.938 11 C -0.001 4.001 12 N -0.398 5.398 13 C 0.363 3.637 14 O -0.453 6.453 15 C -0.282 4.282 16 C -0.057 4.057 17 C -0.196 4.196 18 C 0.126 3.874 19 C -0.475 4.475 20 H 0.101 0.899 21 C -0.148 4.148 22 N -0.401 5.401 23 Si 0.739 3.261 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.186 1.186 27 C -0.251 4.251 28 C -0.071 4.071 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.237 0.763 47 H 0.119 0.881 48 H 0.139 0.861 49 H 0.098 0.902 50 H 0.115 0.885 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.411 14.879 -10.484 18.519 hybrid contribution 0.005 0.284 1.835 1.857 sum 3.415 15.163 -8.649 17.787 Atomic orbital electron populations 1.22474 0.87190 1.03028 1.00235 1.61811 1.07578 1.13258 1.42944 1.22101 0.95740 0.88926 1.00308 1.21646 0.94348 0.99894 0.99809 1.21684 1.00024 0.94931 0.98249 1.20541 0.92930 0.95213 0.96749 1.22310 1.01031 1.02050 0.96468 1.21872 1.00256 1.00539 0.96693 1.21843 0.94800 0.93837 0.91822 0.93803 1.21320 0.99209 0.90949 0.88586 1.46319 1.62142 1.12248 1.19131 1.18597 0.77317 0.80421 0.87331 1.90642 1.43329 1.66932 1.44413 1.18939 1.17055 0.96336 0.95859 1.20503 0.95905 0.92667 0.96645 1.21045 1.05550 1.00386 0.92590 1.17787 0.87515 0.90246 0.91814 1.19773 1.10038 1.11628 1.06097 0.89902 1.26073 0.93894 0.96929 0.97921 1.69714 1.07757 1.25809 1.36846 0.86240 0.79763 0.79466 0.80622 1.18770 1.20081 1.18560 1.20704 1.10955 0.95188 0.98226 1.20351 0.96515 0.96615 0.93659 0.95467 0.91460 0.90561 0.90738 0.95084 0.90685 0.91744 0.91589 0.92344 0.90013 0.92333 0.92948 0.91340 0.93376 0.92286 0.90355 0.92181 0.76327 0.88129 0.86087 0.90217 0.88495 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.86 60.07 0.53 0.71 16 2 N -0.53 -5.44 4.03 -234.92 -0.95 -6.38 16 3 C 0.06 0.49 5.45 -3.83 -0.02 0.47 16 4 C -0.12 -0.95 5.74 -26.65 -0.15 -1.10 16 5 C -0.11 -0.99 4.78 -26.61 -0.13 -1.11 16 6 C -0.05 -0.57 0.54 -154.43 -0.08 -0.65 16 7 C -0.16 -1.84 6.86 37.16 0.25 -1.58 16 8 C -0.14 -1.50 7.67 37.16 0.29 -1.22 16 9 C 0.09 0.98 1.29 -67.72 -0.09 0.89 16 10 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 11 C 0.12 1.77 4.65 -4.04 -0.02 1.75 16 12 N -0.74 -12.15 3.51 -61.31 -0.22 -12.37 16 13 C 0.57 12.04 7.76 -12.42 -0.10 11.94 16 14 O -0.57 -13.77 16.31 5.29 0.09 -13.68 16 15 C -0.28 -6.30 5.89 -104.73 -0.62 -6.91 16 16 C -0.04 -0.93 9.52 -39.61 -0.38 -1.30 16 17 C -0.18 -4.51 8.60 -39.27 -0.34 -4.85 16 18 C 0.13 3.29 5.55 -106.80 -0.59 2.70 16 19 C -0.45 -11.13 9.05 -37.74 -0.34 -11.48 16 20 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16 21 C 0.07 1.71 5.22 -17.31 -0.09 1.62 16 22 N -0.78 -19.20 10.91 55.56 0.61 -18.59 16 23 Si 0.92 17.56 29.58 -169.99 -5.03 12.53 16 24 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 25 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 27 C -0.23 -5.30 9.73 -39.27 -0.38 -5.69 16 28 C -0.05 -1.10 9.47 -39.61 -0.38 -1.48 16 29 H 0.03 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.07 0.53 7.93 -51.93 -0.41 0.12 16 31 H 0.08 0.80 6.57 -51.93 -0.34 0.45 16 32 H 0.07 0.56 7.98 -51.93 -0.41 0.14 16 33 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.63 6.58 -51.93 -0.34 0.29 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.13 5.95 -51.93 -0.31 0.82 16 39 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.05 0.56 7.26 -51.93 -0.38 0.19 16 41 H 0.07 0.74 6.01 -51.93 -0.31 0.42 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.76 6.23 -51.93 -0.32 0.43 16 44 H 0.08 1.23 5.97 -51.93 -0.31 0.92 16 45 H 0.06 0.90 6.03 -51.93 -0.31 0.59 16 46 H 0.40 5.86 3.73 -40.82 -0.15 5.71 16 47 H 0.10 2.44 7.63 -52.48 -0.40 2.04 16 48 H 0.12 3.17 6.25 -52.49 -0.33 2.85 16 49 H 0.29 6.42 8.29 -40.82 -0.34 6.08 16 50 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 51 H 0.09 1.51 6.37 -52.49 -0.33 1.18 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -27.90 382.09 -10.39 -38.29 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -8.02 Total: 11.73 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.63 Total: -17.29 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.56 Total: -37.34 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.90 -10.39 -38.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344593441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.393 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds