Wall clock time and date at job start Tue Mar 31 2020 16:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46848 * 110.99649 * 2 1 4 4 C 1.53040 * 109.51935 * 185.83751 * 3 2 1 5 5 C 1.53121 * 109.27918 * 300.81875 * 4 3 2 6 6 C 1.53114 * 109.15968 * 57.65612 * 5 4 3 7 7 C 1.52995 * 109.50034 * 182.40279 * 6 5 4 8 8 C 1.53003 * 109.50323 * 62.28540 * 6 5 4 9 9 C 1.46847 * 110.99804 * 124.20609 * 2 1 3 10 10 H 1.09001 * 109.46626 * 294.16722 * 9 2 1 11 11 C 1.52995 * 109.46545 * 54.14820 * 9 2 1 12 12 N 1.46505 * 109.47509 * 188.83876 * 11 9 2 13 13 C 1.34777 * 120.00124 * 185.73001 * 12 11 9 14 14 O 1.21584 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.47640 * 119.99738 * 179.97438 * 13 12 11 16 16 C 1.40014 * 119.89243 * 179.97438 * 15 13 12 17 17 C 1.36318 * 120.10635 * 180.02562 * 16 15 13 18 18 C 1.40886 * 119.88866 * 359.97438 * 17 16 15 19 19 C 1.41116 * 120.09999 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00002 * 151.42945 * 19 18 17 21 21 C 1.40230 * 119.99899 * 331.42905 * 19 18 17 22 22 N 1.30642 * 119.99983 * 347.47662 * 21 19 18 23 23 Si 1.86796 * 119.99782 * 167.47489 * 21 19 18 24 24 H 1.48504 * 109.47391 * 60.00182 * 23 21 19 25 25 H 1.48497 * 109.47247 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47375 * 300.00199 * 23 21 19 27 27 C 1.40887 * 119.79677 * 0.02562 * 18 17 16 28 28 C 1.36319 * 119.88884 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47330 * 286.99154 * 1 2 3 30 30 H 1.08995 * 109.47189 * 47.00052 * 1 2 3 31 31 H 1.09002 * 109.46686 * 166.99811 * 1 2 3 32 32 H 1.08999 * 109.46023 * 305.84932 * 3 2 1 33 33 H 1.09001 * 109.46535 * 65.82134 * 3 2 1 34 34 H 1.09001 * 109.50039 * 60.76051 * 4 3 2 35 35 H 1.09005 * 109.49814 * 180.87664 * 4 3 2 36 36 H 1.09006 * 109.51828 * 177.56449 * 5 4 3 37 37 H 1.09004 * 109.51967 * 297.74969 * 5 4 3 38 38 H 1.09003 * 109.47260 * 189.41402 * 7 6 5 39 39 H 1.08999 * 109.47485 * 309.41216 * 7 6 5 40 40 H 1.09003 * 109.47055 * 69.41690 * 7 6 5 41 41 H 1.08990 * 109.47504 * 300.19574 * 8 6 5 42 42 H 1.09003 * 109.46774 * 60.19681 * 8 6 5 43 43 H 1.09002 * 109.46822 * 180.19591 * 8 6 5 44 44 H 1.09002 * 109.47264 * 68.83317 * 11 9 2 45 45 H 1.09007 * 109.47024 * 308.83952 * 11 9 2 46 46 H 0.96998 * 119.99295 * 5.72959 * 12 11 9 47 47 H 1.08003 * 119.95104 * 359.72183 * 16 15 13 48 48 H 1.08001 * 120.05273 * 179.97438 * 17 16 15 49 49 H 0.96999 * 120.00068 * 179.97438 * 22 21 19 50 50 H 1.08001 * 120.05263 * 180.02562 * 27 18 17 51 51 H 1.08002 * 119.94257 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 3.5181 -0.8714 1.0210 7 6 4.0681 -1.6556 2.2140 8 6 3.8876 -1.5903 -0.2781 9 6 1.9952 -0.7707 1.1338 10 1 1.7326 -0.2707 2.0661 11 6 1.3892 -2.1754 1.1205 12 7 1.7449 -2.8726 2.3590 13 6 1.4173 -4.1700 2.5200 14 8 0.8261 -4.7617 1.6376 15 6 1.7763 -4.8726 3.7679 16 6 1.4344 -6.2203 3.9330 17 6 1.7633 -6.8731 5.0836 18 6 2.4488 -6.1897 6.1072 19 6 2.7919 -6.8613 7.2999 20 1 3.6601 -6.5524 7.8630 21 6 2.0054 -7.9298 7.7540 22 7 0.8326 -8.1499 7.2222 23 14 2.6349 -9.0386 9.1192 24 1 2.8805 -8.2297 10.3402 25 1 1.6230 -10.0848 9.4134 26 1 3.9018 -9.6829 8.6892 27 6 2.7906 -4.8336 5.9364 28 6 2.4566 -4.1889 4.7827 29 1 -0.3634 0.3003 0.9828 30 1 -0.3633 0.7008 -0.7516 31 1 -0.3633 -1.0014 -0.2312 32 1 1.5634 1.9257 -0.8330 33 1 1.7323 1.8609 0.9376 34 1 3.7813 0.8567 -1.0906 35 1 3.9098 2.3513 -0.1310 36 1 5.1998 0.4716 0.8906 37 1 3.8886 1.0356 1.9561 38 1 3.7752 -2.7020 2.1271 39 1 5.1555 -1.5826 2.2267 40 1 3.6652 -1.2411 3.1381 41 1 3.4970 -1.0298 -1.1274 42 1 4.9724 -1.6616 -0.3579 43 1 3.4569 -2.5915 -0.2744 44 1 1.7774 -2.7306 0.2666 45 1 0.3043 -2.1024 1.0435 46 1 2.2162 -2.4003 3.0631 47 1 0.9049 -6.7422 3.1495 48 1 1.4987 -7.9126 5.2102 49 1 0.2888 -8.8892 7.5360 50 1 3.3165 -4.3058 6.7183 51 1 2.7186 -3.1495 4.6507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344593441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:57 Heat of formation + Delta-G solvation = -32.144320 kcal Electronic energy + Delta-G solvation = -29011.299496 eV Core-core repulsion = 25295.166937 eV Total energy + Delta-G solvation = -3716.132559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.62435 -40.36633 -38.85411 -36.30762 -35.67294 -35.63420 -33.05051 -31.91484 -31.35464 -29.32958 -28.25289 -27.68875 -27.49637 -26.04306 -23.68137 -22.87580 -22.38986 -22.22840 -21.28582 -19.46891 -19.32073 -18.38058 -17.25296 -17.08404 -16.91456 -16.45505 -15.95429 -15.74201 -15.69446 -15.48007 -15.07388 -14.92641 -14.72360 -14.33507 -14.22181 -14.00334 -13.96809 -13.65146 -13.39365 -13.34597 -13.22499 -13.09461 -12.86633 -12.82001 -12.72580 -12.63237 -12.35486 -12.32383 -12.13836 -11.86835 -11.77099 -11.36649 -11.34753 -11.15370 -11.12867 -11.02824 -10.72629 -9.91247 -9.57173 -9.35938 -9.28505 -8.74130 -6.49196 0.43183 1.13917 1.38669 1.44601 1.52077 2.12259 2.18945 2.24743 2.81048 3.05040 3.56071 3.64457 3.69249 3.88691 4.11328 4.14774 4.21542 4.26747 4.30968 4.39179 4.40590 4.42950 4.51821 4.56542 4.63970 4.72825 4.77230 4.84009 4.91911 4.95659 4.97646 4.99953 5.02389 5.03718 5.10054 5.17003 5.18831 5.21330 5.25191 5.32244 5.38509 5.46252 5.51627 5.59560 5.63820 5.77249 5.95099 6.01400 6.07088 6.14159 6.20750 6.56763 6.69558 6.77889 6.89219 7.43398 8.20712 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.002487 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.233650 B =11255.736449 C =11794.438498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.053 4.053 7 C -0.162 4.162 8 C -0.131 4.131 9 C 0.095 3.905 10 H 0.047 0.953 11 C 0.125 3.875 12 N -0.718 5.718 13 C 0.569 3.431 14 O -0.607 6.607 15 C -0.286 4.286 16 C -0.052 4.052 17 C -0.196 4.196 18 C 0.103 3.897 19 C -0.475 4.475 20 H 0.092 0.908 21 C 0.031 3.969 22 N -0.812 5.812 23 Si 0.990 3.010 24 H -0.254 1.254 25 H -0.270 1.270 26 H -0.258 1.258 27 C -0.240 4.240 28 C -0.039 4.039 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.033 0.967 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.409 0.591 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.293 0.707 50 H 0.118 0.882 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 18.320 -8.852 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.053 4.053 7 C -0.220 4.220 8 C -0.189 4.189 9 C -0.014 4.014 10 H 0.065 0.935 11 C 0.002 3.998 12 N -0.374 5.374 13 C 0.362 3.638 14 O -0.492 6.492 15 C -0.290 4.290 16 C -0.071 4.071 17 C -0.216 4.216 18 C 0.100 3.900 19 C -0.503 4.503 20 H 0.110 0.890 21 C -0.186 4.186 22 N -0.437 5.437 23 Si 0.810 3.190 24 H -0.178 1.178 25 H -0.194 1.194 26 H -0.182 1.182 27 C -0.259 4.259 28 C -0.058 4.058 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.249 0.751 47 H 0.109 0.891 48 H 0.122 0.878 49 H 0.104 0.896 50 H 0.136 0.864 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.801 17.598 -9.901 20.755 hybrid contribution -0.449 -0.465 1.536 1.667 sum 4.351 17.132 -8.365 19.556 Atomic orbital electron populations 1.22478 0.86954 1.02701 1.00804 1.61818 1.07912 1.14466 1.42155 1.22200 0.96210 0.87704 1.01034 1.21647 0.93822 1.00817 0.99115 1.21656 1.00437 0.93435 0.98962 1.20543 0.92282 0.96472 0.96020 1.22291 1.01955 1.00435 0.97292 1.21814 1.00615 0.99171 0.97250 1.21713 0.95261 0.91838 0.92573 0.93549 1.21405 0.99047 0.92525 0.86868 1.46106 1.60564 1.10650 1.20063 1.18433 0.77195 0.81755 0.86418 1.90622 1.45087 1.68114 1.45340 1.19186 1.16882 0.95864 0.97115 1.20558 0.96395 0.93936 0.96227 1.20962 1.07171 0.99931 0.93515 1.18147 0.88101 0.91664 0.92137 1.20105 1.10821 1.12981 1.06407 0.88994 1.27000 0.93615 0.97794 1.00225 1.69785 1.08963 1.26573 1.38336 0.85121 0.79098 0.77365 0.77445 1.17756 1.19414 1.18199 1.20977 1.11038 0.94445 0.99440 1.20651 0.94648 0.98330 0.92166 0.95549 0.89570 0.92053 0.89359 0.94826 0.91089 0.89796 0.90747 0.91829 0.92709 0.91198 0.91981 0.91049 0.92530 0.94807 0.91789 0.92785 0.75058 0.89114 0.87834 0.89564 0.86438 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.86 127.69 1.13 1.46 16 2 N -0.54 -9.99 4.03 -897.17 -3.62 -13.60 16 3 C 0.06 0.78 5.45 86.33 0.47 1.25 16 4 C -0.12 -1.46 5.74 30.65 0.18 -1.29 16 5 C -0.11 -1.55 4.78 30.67 0.15 -1.41 16 6 C -0.05 -1.01 0.54 -52.13 -0.03 -1.04 16 7 C -0.16 -3.35 6.86 71.98 0.49 -2.86 16 8 C -0.13 -2.75 7.67 71.98 0.55 -2.19 16 9 C 0.10 2.01 1.29 44.94 0.06 2.07 16 10 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 11 C 0.13 3.56 4.65 86.38 0.40 3.96 16 12 N -0.72 -23.09 3.51 -466.15 -1.64 -24.73 16 13 C 0.57 24.35 7.76 86.73 0.67 25.03 16 14 O -0.61 -30.19 16.31 -3.98 -0.06 -30.25 16 15 C -0.29 -13.14 5.89 -19.94 -0.12 -13.26 16 16 C -0.05 -2.65 9.52 22.25 0.21 -2.44 16 17 C -0.20 -10.51 8.60 22.47 0.19 -10.32 16 18 C 0.10 5.32 5.55 -21.28 -0.12 5.20 16 19 C -0.48 -23.93 9.05 23.46 0.21 -23.72 16 20 H 0.09 4.30 7.88 -2.91 -0.02 4.28 16 21 C 0.03 1.48 5.22 85.35 0.45 1.93 16 22 N -0.81 -41.21 10.91 21.87 0.24 -40.97 16 23 Si 0.99 35.74 29.58 68.60 2.03 37.77 16 24 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 25 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 26 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 27 C -0.24 -10.84 9.73 22.47 0.22 -10.62 16 28 C -0.04 -1.61 9.47 22.25 0.21 -1.39 16 29 H 0.03 0.47 8.09 -2.38 -0.02 0.45 16 30 H 0.09 1.19 7.93 -2.39 -0.02 1.17 16 31 H 0.06 1.26 6.57 -2.39 -0.02 1.25 16 32 H 0.09 1.02 7.98 -2.39 -0.02 1.00 16 33 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.98 6.58 -2.39 -0.02 0.96 16 35 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 1.44 5.95 -2.39 -0.01 1.42 16 39 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 40 H 0.06 1.15 7.26 -2.39 -0.02 1.13 16 41 H 0.07 1.44 6.01 -2.39 -0.01 1.42 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.03 0.87 6.23 -2.39 -0.01 0.85 16 44 H 0.06 2.05 5.97 -2.39 -0.01 2.03 16 45 H 0.05 1.63 6.03 -2.38 -0.01 1.61 16 46 H 0.41 11.27 3.73 -92.71 -0.35 10.93 16 47 H 0.09 4.70 7.63 -2.91 -0.02 4.68 16 48 H 0.10 5.78 6.25 -2.91 -0.02 5.77 16 49 H 0.29 13.46 8.29 -92.71 -0.77 12.69 16 50 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 51 H 0.13 4.10 6.37 -2.91 -0.02 4.08 16 Total: -1.00 -62.59 382.09 2.87 -59.72 By element: Atomic # 1 Polarization: 41.12 SS G_CDS: 0.59 Total: 41.70 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 5.33 Total: -29.64 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -5.01 Total: -79.30 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.06 Total: -30.25 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Total: -62.59 2.87 -59.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344593441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.575 kcal (2) G-P(sol) polarization free energy of solvation -62.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds