Wall clock time and date at job start Tue Mar 31 2020 16:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46847 * 111.00274 * 2 1 4 4 C 1.53034 * 109.52750 * 174.15856 * 3 2 1 5 5 C 1.53121 * 109.27395 * 59.18607 * 4 3 2 6 6 C 1.53120 * 109.15890 * 302.34462 * 5 4 3 7 7 C 1.53001 * 109.50144 * 177.59790 * 6 5 4 8 8 C 1.53002 * 109.50702 * 297.67293 * 6 5 4 9 9 C 1.46853 * 110.99971 * 235.79581 * 2 1 3 10 10 H 1.08998 * 109.45180 * 65.83063 * 9 2 1 11 11 C 1.52996 * 109.46029 * 305.85589 * 9 2 1 12 12 N 1.46497 * 109.47117 * 308.58206 * 11 9 2 13 13 C 1.34782 * 119.99768 * 186.46725 * 12 11 9 14 14 O 1.21583 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.47641 * 119.99683 * 179.97438 * 13 12 11 16 16 C 1.40019 * 119.89599 * 359.73430 * 15 13 12 17 17 C 1.36322 * 120.10386 * 179.71585 * 16 15 13 18 18 C 1.40885 * 119.89041 * 0.57187 * 17 16 15 19 19 C 1.41110 * 120.10049 * 179.72014 * 18 17 16 20 20 H 1.08005 * 120.00022 * 210.12617 * 19 18 17 21 21 C 1.40228 * 120.00286 * 30.12453 * 19 18 17 22 22 N 1.30644 * 119.99399 * 11.20527 * 21 19 18 23 23 Si 1.86793 * 120.00109 * 191.20188 * 21 19 18 24 24 H 1.48499 * 109.47521 * 60.00100 * 23 21 19 25 25 H 1.48502 * 109.47008 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47247 * 299.99919 * 23 21 19 27 27 C 1.40889 * 119.79824 * 359.70207 * 18 17 16 28 28 C 1.36320 * 119.88828 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.47321 * 62.48390 * 1 2 3 30 30 H 1.09004 * 109.47234 * 182.48785 * 1 2 3 31 31 H 1.08998 * 109.47360 * 302.48651 * 1 2 3 32 32 H 1.09008 * 109.45616 * 54.14800 * 3 2 1 33 33 H 1.08999 * 109.46624 * 294.18336 * 3 2 1 34 34 H 1.08996 * 109.50608 * 179.12470 * 4 3 2 35 35 H 1.09004 * 109.50866 * 299.24863 * 4 3 2 36 36 H 1.08998 * 109.52425 * 62.25245 * 5 4 3 37 37 H 1.09001 * 109.52193 * 182.37755 * 5 4 3 38 38 H 1.08997 * 109.47353 * 59.99837 * 7 6 5 39 39 H 1.08997 * 109.47381 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.47055 * 299.99607 * 7 6 5 41 41 H 1.09000 * 109.46556 * 68.65965 * 8 6 5 42 42 H 1.08996 * 109.47334 * 188.66210 * 8 6 5 43 43 H 1.09000 * 109.46754 * 308.66286 * 8 6 5 44 44 H 1.09002 * 109.47268 * 68.58540 * 11 9 2 45 45 H 1.09001 * 109.47226 * 188.58325 * 11 9 2 46 46 H 0.96997 * 120.00000 * 6.47006 * 12 11 9 47 47 H 1.07998 * 119.94737 * 359.97438 * 16 15 13 48 48 H 1.08000 * 120.05388 * 180.29320 * 17 16 15 49 49 H 0.97001 * 119.99496 * 180.02562 * 22 21 19 50 50 H 1.07991 * 120.05607 * 180.02562 * 27 18 17 51 51 H 1.07998 * 119.94232 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1187 0.5371 -1.0144 6 6 3.5180 -0.8713 -1.0210 7 6 4.0679 -1.6556 -2.2141 8 6 3.8884 -1.5908 0.2776 9 6 1.9952 -0.7707 -1.1339 10 1 1.7324 -0.2705 -2.0660 11 6 1.3890 -2.1754 -1.1206 12 7 1.5645 -2.7705 0.2065 13 6 1.2242 -4.0573 0.4183 14 8 0.7720 -4.7243 -0.4920 15 6 1.4016 -4.6572 1.7557 16 6 1.9288 -3.8889 2.8008 17 6 2.0890 -4.4368 4.0388 18 6 1.7345 -5.7818 4.2625 19 6 1.9040 -6.3551 5.5407 20 1 2.1114 -7.4108 5.6359 21 6 1.8032 -5.5543 6.6874 22 7 1.3405 -4.3361 6.5946 23 14 2.3303 -6.2294 8.3474 24 1 3.7665 -6.6035 8.2963 25 1 2.1250 -5.1931 9.3910 26 1 1.5178 -7.4286 8.6748 27 6 1.2098 -6.5526 3.2063 28 6 1.0470 -5.9940 1.9735 29 1 -0.3634 0.4748 -0.9114 30 1 -0.3634 -1.0267 0.0446 31 1 -0.3634 0.5519 0.8668 32 1 1.5634 1.9256 0.8331 33 1 1.7324 1.8609 -0.9375 34 1 3.9098 2.3512 0.1311 35 1 3.7814 0.8566 1.0906 36 1 3.8886 1.0356 -1.9560 37 1 5.1998 0.4725 -0.8912 38 1 5.1529 -1.7240 -2.1350 39 1 3.6397 -2.6579 -2.2185 40 1 3.8026 -1.1435 -3.1390 41 1 3.3692 -1.1218 1.1134 42 1 3.5949 -2.6382 0.2091 43 1 4.9649 -1.5246 0.4353 44 1 0.3260 -2.1146 -1.3539 45 1 1.8896 -2.7942 -1.8653 46 1 1.9256 -2.2384 0.9327 47 1 2.2050 -2.8594 2.6270 48 1 2.4913 -3.8421 4.8455 49 1 1.2711 -3.7820 7.3878 50 1 0.9362 -7.5838 3.3733 51 1 0.6445 -6.5839 1.1633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344593442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:02 Heat of formation + Delta-G solvation = -17.045016 kcal Electronic energy + Delta-G solvation = -29606.892592 eV Core-core repulsion = 25891.414787 eV Total energy + Delta-G solvation = -3715.477804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.62923 -38.67712 -37.00028 -35.11805 -34.47626 -33.75913 -31.91826 -30.12499 -29.39856 -28.24446 -27.27491 -26.65977 -26.05212 -24.86703 -22.10236 -21.53369 -21.21898 -20.76230 -19.45504 -18.52775 -17.44423 -16.75968 -16.10170 -15.70314 -15.57920 -15.27998 -14.69474 -14.50073 -14.15438 -13.94055 -13.77664 -13.57798 -13.38122 -13.12674 -12.89374 -12.68005 -12.46653 -12.37029 -12.15431 -12.04700 -11.94836 -11.80544 -11.76265 -11.38907 -11.34054 -11.31235 -11.21721 -11.05609 -10.93429 -10.57053 -10.54986 -10.27272 -10.09400 -9.96220 -9.47212 -9.36205 -8.89238 -8.41824 -8.30694 -7.65721 -7.41791 -6.91498 -4.55438 2.29533 2.98230 2.98699 3.01855 3.07745 3.65149 3.80358 3.96609 4.09353 4.47436 4.56907 4.65789 4.70315 4.90875 5.07886 5.11745 5.30804 5.32879 5.36498 5.38577 5.48452 5.54160 5.61099 5.66534 5.69197 5.74550 5.78646 5.84165 5.93295 5.96280 5.97232 6.03992 6.12305 6.16386 6.21610 6.26170 6.34711 6.36632 6.58012 6.82612 6.90900 6.91773 6.98036 7.05711 7.18865 7.20066 7.50965 7.71589 7.85545 7.91864 8.14412 8.40863 8.47123 8.70081 8.80938 9.18481 10.01295 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.003190 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.296841 B = 8775.617614 C = 9553.861122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.534 5.534 3 C 0.058 3.942 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.054 4.054 7 C -0.146 4.146 8 C -0.153 4.153 9 C 0.083 3.917 10 H 0.050 0.950 11 C 0.126 3.874 12 N -0.728 5.728 13 C 0.565 3.435 14 O -0.581 6.581 15 C -0.275 4.275 16 C -0.064 4.064 17 C -0.170 4.170 18 C 0.131 3.869 19 C -0.450 4.450 20 H 0.082 0.918 21 C 0.074 3.926 22 N -0.783 5.783 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.235 4.235 28 C -0.027 4.027 29 H 0.022 0.978 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.411 0.589 47 H 0.090 0.910 48 H 0.119 0.881 49 H 0.285 0.715 50 H 0.097 0.903 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 12.765 -9.806 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.070 4.070 4 C -0.158 4.158 5 C -0.147 4.147 6 C -0.054 4.054 7 C -0.203 4.203 8 C -0.210 4.210 9 C -0.025 4.025 10 H 0.068 0.932 11 C 0.001 3.999 12 N -0.385 5.385 13 C 0.360 3.640 14 O -0.464 6.464 15 C -0.279 4.279 16 C -0.083 4.083 17 C -0.189 4.189 18 C 0.128 3.872 19 C -0.479 4.479 20 H 0.100 0.900 21 C -0.146 4.146 22 N -0.407 5.407 23 Si 0.738 3.262 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.254 4.254 28 C -0.046 4.046 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.252 0.748 47 H 0.108 0.892 48 H 0.137 0.863 49 H 0.096 0.904 50 H 0.116 0.884 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.936 12.322 -9.862 16.266 hybrid contribution -0.071 0.604 0.369 0.711 sum 3.865 12.925 -9.492 16.496 Atomic orbital electron populations 1.22456 0.86925 1.03170 1.00225 1.61792 1.07820 1.13345 1.42959 1.22082 0.95663 0.89027 1.00249 1.21637 0.94379 0.99873 0.99904 1.21669 0.99996 0.94892 0.98149 1.20543 0.92947 0.95220 0.96740 1.21958 1.01079 1.00498 0.96775 1.22257 1.00561 1.01785 0.96433 1.21925 0.94839 0.93693 0.92075 0.93198 1.21288 0.99716 0.91843 0.87012 1.46267 1.67404 1.12622 1.12222 1.18634 0.75967 0.80712 0.88718 1.90622 1.47839 1.62232 1.45695 1.18965 1.20111 0.96299 0.92538 1.20521 0.97613 0.96714 0.93431 1.20977 1.05546 0.96954 0.95431 1.17786 0.85478 0.91766 0.92214 1.19759 1.41248 0.96536 0.90347 0.89976 1.26028 0.92378 0.94369 1.01818 1.69709 1.30693 1.08034 1.32276 0.86258 0.80401 0.79600 0.79911 1.18628 1.20147 1.18805 1.20776 1.10341 1.00076 0.94214 1.20374 0.95100 0.93187 0.95935 0.95932 0.90366 0.91252 0.90689 0.95223 0.91786 0.90504 0.92570 0.91675 0.92356 0.91763 0.93020 0.91145 0.90622 0.93388 0.92664 0.90905 0.74843 0.89205 0.86278 0.90400 0.88438 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.08 60.06 0.55 0.77 16 2 N -0.53 -6.00 3.09 -234.93 -0.73 -6.73 16 3 C 0.06 0.55 5.46 -3.84 -0.02 0.52 16 4 C -0.12 -1.07 5.75 -26.65 -0.15 -1.23 16 5 C -0.11 -0.99 4.78 -26.61 -0.13 -1.12 16 6 C -0.05 -0.58 0.54 -154.43 -0.08 -0.66 16 7 C -0.15 -1.48 8.15 37.16 0.30 -1.18 16 8 C -0.15 -1.91 6.27 37.16 0.23 -1.68 16 9 C 0.08 0.94 1.56 -67.72 -0.11 0.84 16 10 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 11 C 0.13 1.79 4.26 -4.05 -0.02 1.77 16 12 N -0.73 -12.17 3.01 -61.32 -0.18 -12.35 16 13 C 0.57 12.00 7.76 -12.42 -0.10 11.91 16 14 O -0.58 -13.82 16.30 5.29 0.09 -13.73 16 15 C -0.27 -6.30 5.89 -104.73 -0.62 -6.92 16 16 C -0.06 -1.42 9.47 -39.60 -0.38 -1.80 16 17 C -0.17 -4.18 8.59 -39.27 -0.34 -4.52 16 18 C 0.13 3.35 5.53 -106.80 -0.59 2.76 16 19 C -0.45 -11.35 9.05 -37.75 -0.34 -11.69 16 20 H 0.08 1.98 7.87 -52.48 -0.41 1.56 16 21 C 0.07 1.75 5.23 -17.31 -0.09 1.66 16 22 N -0.78 -19.09 10.94 55.56 0.61 -18.49 16 23 Si 0.91 17.64 29.58 -169.99 -5.03 12.61 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 27 C -0.23 -5.73 9.73 -39.27 -0.38 -6.11 16 28 C -0.03 -0.64 9.52 -39.61 -0.38 -1.01 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 1.02 6.11 -51.93 -0.32 0.70 16 31 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.07 0.68 8.11 -51.92 -0.42 0.25 16 33 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.77 6.79 -51.93 -0.35 0.42 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.75 6.28 -51.93 -0.33 0.42 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.92 5.31 -51.93 -0.28 0.64 16 42 H 0.08 1.12 5.93 -51.93 -0.31 0.81 16 43 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 44 H 0.06 0.81 6.82 -51.93 -0.35 0.45 16 45 H 0.07 1.07 6.02 -51.93 -0.31 0.76 16 46 H 0.41 6.60 3.20 -40.82 -0.13 6.47 16 47 H 0.09 1.76 6.37 -52.49 -0.33 1.43 16 48 H 0.12 2.99 6.33 -52.49 -0.33 2.66 16 49 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 50 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 51 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -27.59 381.38 -10.19 -37.78 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -8.06 Total: 12.85 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.64 Total: -17.69 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.30 Total: -37.57 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.59 -10.19 -37.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344593442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.735 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds