Wall clock time and date at job start Tue Mar 31 2020 16:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46847 * 111.00274 * 2 1 4 4 C 1.53034 * 109.52750 * 174.15856 * 3 2 1 5 5 C 1.53121 * 109.27395 * 59.18607 * 4 3 2 6 6 C 1.53120 * 109.15890 * 302.34462 * 5 4 3 7 7 C 1.53001 * 109.50144 * 177.59790 * 6 5 4 8 8 C 1.53002 * 109.50702 * 297.67293 * 6 5 4 9 9 C 1.46853 * 110.99971 * 235.79581 * 2 1 3 10 10 H 1.08998 * 109.45180 * 65.83063 * 9 2 1 11 11 C 1.52996 * 109.46029 * 305.85589 * 9 2 1 12 12 N 1.46497 * 109.47117 * 308.58206 * 11 9 2 13 13 C 1.34782 * 119.99768 * 186.46725 * 12 11 9 14 14 O 1.21583 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.47641 * 119.99683 * 179.97438 * 13 12 11 16 16 C 1.40019 * 119.89599 * 359.73430 * 15 13 12 17 17 C 1.36322 * 120.10386 * 179.71585 * 16 15 13 18 18 C 1.40885 * 119.89041 * 0.57187 * 17 16 15 19 19 C 1.41110 * 120.10049 * 179.72014 * 18 17 16 20 20 H 1.08005 * 120.00022 * 210.12617 * 19 18 17 21 21 C 1.40228 * 120.00286 * 30.12453 * 19 18 17 22 22 N 1.30644 * 119.99399 * 11.20527 * 21 19 18 23 23 Si 1.86793 * 120.00109 * 191.20188 * 21 19 18 24 24 H 1.48499 * 109.47521 * 60.00100 * 23 21 19 25 25 H 1.48502 * 109.47008 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47247 * 299.99919 * 23 21 19 27 27 C 1.40889 * 119.79824 * 359.70207 * 18 17 16 28 28 C 1.36320 * 119.88828 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.47321 * 62.48390 * 1 2 3 30 30 H 1.09004 * 109.47234 * 182.48785 * 1 2 3 31 31 H 1.08998 * 109.47360 * 302.48651 * 1 2 3 32 32 H 1.09008 * 109.45616 * 54.14800 * 3 2 1 33 33 H 1.08999 * 109.46624 * 294.18336 * 3 2 1 34 34 H 1.08996 * 109.50608 * 179.12470 * 4 3 2 35 35 H 1.09004 * 109.50866 * 299.24863 * 4 3 2 36 36 H 1.08998 * 109.52425 * 62.25245 * 5 4 3 37 37 H 1.09001 * 109.52193 * 182.37755 * 5 4 3 38 38 H 1.08997 * 109.47353 * 59.99837 * 7 6 5 39 39 H 1.08997 * 109.47381 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.47055 * 299.99607 * 7 6 5 41 41 H 1.09000 * 109.46556 * 68.65965 * 8 6 5 42 42 H 1.08996 * 109.47334 * 188.66210 * 8 6 5 43 43 H 1.09000 * 109.46754 * 308.66286 * 8 6 5 44 44 H 1.09002 * 109.47268 * 68.58540 * 11 9 2 45 45 H 1.09001 * 109.47226 * 188.58325 * 11 9 2 46 46 H 0.96997 * 120.00000 * 6.47006 * 12 11 9 47 47 H 1.07998 * 119.94737 * 359.97438 * 16 15 13 48 48 H 1.08000 * 120.05388 * 180.29320 * 17 16 15 49 49 H 0.97001 * 119.99496 * 180.02562 * 22 21 19 50 50 H 1.07991 * 120.05607 * 180.02562 * 27 18 17 51 51 H 1.07998 * 119.94232 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1187 0.5371 -1.0144 6 6 3.5180 -0.8713 -1.0210 7 6 4.0679 -1.6556 -2.2141 8 6 3.8884 -1.5908 0.2776 9 6 1.9952 -0.7707 -1.1339 10 1 1.7324 -0.2705 -2.0660 11 6 1.3890 -2.1754 -1.1206 12 7 1.5645 -2.7705 0.2065 13 6 1.2242 -4.0573 0.4183 14 8 0.7720 -4.7243 -0.4920 15 6 1.4016 -4.6572 1.7557 16 6 1.9288 -3.8889 2.8008 17 6 2.0890 -4.4368 4.0388 18 6 1.7345 -5.7818 4.2625 19 6 1.9040 -6.3551 5.5407 20 1 2.1114 -7.4108 5.6359 21 6 1.8032 -5.5543 6.6874 22 7 1.3405 -4.3361 6.5946 23 14 2.3303 -6.2294 8.3474 24 1 3.7665 -6.6035 8.2963 25 1 2.1250 -5.1931 9.3910 26 1 1.5178 -7.4286 8.6748 27 6 1.2098 -6.5526 3.2063 28 6 1.0470 -5.9940 1.9735 29 1 -0.3634 0.4748 -0.9114 30 1 -0.3634 -1.0267 0.0446 31 1 -0.3634 0.5519 0.8668 32 1 1.5634 1.9256 0.8331 33 1 1.7324 1.8609 -0.9375 34 1 3.9098 2.3512 0.1311 35 1 3.7814 0.8566 1.0906 36 1 3.8886 1.0356 -1.9560 37 1 5.1998 0.4725 -0.8912 38 1 5.1529 -1.7240 -2.1350 39 1 3.6397 -2.6579 -2.2185 40 1 3.8026 -1.1435 -3.1390 41 1 3.3692 -1.1218 1.1134 42 1 3.5949 -2.6382 0.2091 43 1 4.9649 -1.5246 0.4353 44 1 0.3260 -2.1146 -1.3539 45 1 1.8896 -2.7942 -1.8653 46 1 1.9256 -2.2384 0.9327 47 1 2.2050 -2.8594 2.6270 48 1 2.4913 -3.8421 4.8455 49 1 1.2711 -3.7820 7.3878 50 1 0.9362 -7.5838 3.3733 51 1 0.6445 -6.5839 1.1633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344593442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:00 Heat of formation + Delta-G solvation = -29.767146 kcal Electronic energy + Delta-G solvation = -29607.444265 eV Core-core repulsion = 25891.414787 eV Total energy + Delta-G solvation = -3716.029477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.68709 -40.26222 -38.79318 -36.01097 -35.73230 -35.59294 -33.08583 -31.81698 -31.28529 -29.39171 -28.24281 -27.67915 -27.39946 -26.07927 -23.68289 -22.82600 -22.33275 -22.17845 -21.10554 -19.49064 -19.28763 -18.31457 -17.31731 -17.13286 -16.78835 -16.41629 -15.90283 -15.72296 -15.51054 -15.28192 -15.05922 -14.98303 -14.82037 -14.37981 -14.23678 -13.87437 -13.71499 -13.67940 -13.39537 -13.32184 -13.22908 -13.05723 -12.87648 -12.82384 -12.73372 -12.58952 -12.33306 -12.32375 -12.13630 -11.88499 -11.73823 -11.38968 -11.33135 -11.14284 -11.10092 -10.98561 -10.64954 -9.80680 -9.54624 -9.29513 -9.25691 -8.70811 -6.46803 0.46815 1.15702 1.40967 1.46047 1.53101 2.16777 2.22198 2.46325 2.84240 2.97335 3.58005 3.67461 3.71015 3.90619 4.12627 4.19468 4.27475 4.32043 4.34236 4.41394 4.45896 4.47677 4.52743 4.59084 4.62170 4.71025 4.78945 4.83654 4.87906 4.93187 4.95054 5.01951 5.06127 5.07598 5.11517 5.16962 5.17719 5.18150 5.31892 5.35509 5.38129 5.47068 5.59762 5.62813 5.66828 5.84071 5.96809 6.02033 6.11410 6.17308 6.26166 6.57409 6.80992 6.83116 6.91625 7.52249 8.24652 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.003190 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.296841 B = 8775.617614 C = 9553.861122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.058 3.942 4 C -0.118 4.118 5 C -0.104 4.104 6 C -0.052 4.052 7 C -0.143 4.143 8 C -0.149 4.149 9 C 0.092 3.908 10 H 0.066 0.934 11 C 0.124 3.876 12 N -0.706 5.706 13 C 0.565 3.435 14 O -0.610 6.610 15 C -0.283 4.283 16 C -0.053 4.053 17 C -0.187 4.187 18 C 0.104 3.896 19 C -0.482 4.482 20 H 0.084 0.916 21 C 0.037 3.963 22 N -0.810 5.810 23 Si 0.988 3.012 24 H -0.258 1.258 25 H -0.265 1.265 26 H -0.261 1.261 27 C -0.247 4.247 28 C -0.037 4.037 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.415 0.585 47 H 0.116 0.884 48 H 0.112 0.888 49 H 0.294 0.706 50 H 0.104 0.896 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 14.894 -9.868 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.273 5.273 3 C -0.069 4.069 4 C -0.156 4.156 5 C -0.142 4.142 6 C -0.052 4.052 7 C -0.201 4.201 8 C -0.207 4.207 9 C -0.017 4.017 10 H 0.084 0.916 11 C 0.000 4.000 12 N -0.361 5.361 13 C 0.358 3.642 14 O -0.495 6.495 15 C -0.287 4.287 16 C -0.072 4.072 17 C -0.206 4.206 18 C 0.101 3.899 19 C -0.510 4.510 20 H 0.102 0.898 21 C -0.181 4.181 22 N -0.434 5.434 23 Si 0.808 3.192 24 H -0.182 1.182 25 H -0.189 1.189 26 H -0.185 1.185 27 C -0.266 4.266 28 C -0.056 4.056 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.257 0.743 47 H 0.133 0.867 48 H 0.130 0.870 49 H 0.105 0.895 50 H 0.123 0.877 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.832 14.495 -9.942 18.229 hybrid contribution -0.368 0.002 0.305 0.478 sum 4.464 14.497 -9.637 17.971 Atomic orbital electron populations 1.22391 0.87061 1.01850 1.01212 1.61786 1.07852 1.14727 1.42956 1.22138 0.95958 0.87825 1.01010 1.21636 0.93998 1.00817 0.99149 1.21632 1.00243 0.93440 0.98851 1.20542 0.92515 0.96387 0.95806 1.21932 1.01372 0.99452 0.97329 1.22180 1.00959 1.00118 0.97407 1.21849 0.95074 0.91788 0.92976 0.91608 1.21464 0.99818 0.93574 0.85130 1.46116 1.65414 1.11029 1.13587 1.18438 0.76133 0.81979 0.87700 1.90601 1.49428 1.63289 1.46218 1.19253 1.19485 0.96251 0.93699 1.20671 0.96361 0.97716 0.92431 1.20984 1.06682 0.96907 0.96052 1.18120 0.86197 0.92557 0.92983 1.20037 1.42747 0.97106 0.91130 0.89823 1.26863 0.91632 0.94434 1.05127 1.69746 1.30694 1.09101 1.33866 0.85157 0.79915 0.79050 0.75098 1.18191 1.18920 1.18482 1.20917 1.10779 1.00555 0.94397 1.20516 0.95343 0.93889 0.95853 0.94589 0.92750 0.90682 0.90220 0.94152 0.89891 0.91821 0.91265 0.91013 0.91676 0.93794 0.91387 0.91815 0.93350 0.92644 0.93015 0.91334 0.74306 0.86655 0.87044 0.89479 0.87744 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.08 127.69 1.16 1.63 16 2 N -0.55 -11.26 3.09 -897.19 -2.77 -14.03 16 3 C 0.06 0.93 5.46 86.32 0.47 1.40 16 4 C -0.12 -1.76 5.75 30.65 0.18 -1.58 16 5 C -0.10 -1.56 4.78 30.68 0.15 -1.41 16 6 C -0.05 -1.00 0.54 -52.13 -0.03 -1.03 16 7 C -0.14 -2.66 8.15 71.98 0.59 -2.08 16 8 C -0.15 -3.57 6.27 71.98 0.45 -3.12 16 9 C 0.09 1.91 1.56 44.93 0.07 1.98 16 10 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 11 C 0.12 3.45 4.26 86.38 0.37 3.81 16 12 N -0.71 -23.59 3.01 -466.16 -1.40 -24.99 16 13 C 0.56 24.31 7.76 86.73 0.67 24.98 16 14 O -0.61 -29.53 16.30 -3.98 -0.06 -29.60 16 15 C -0.28 -13.20 5.89 -19.93 -0.12 -13.32 16 16 C -0.05 -2.39 9.47 22.25 0.21 -2.18 16 17 C -0.19 -9.43 8.59 22.47 0.19 -9.23 16 18 C 0.10 5.52 5.53 -21.28 -0.12 5.40 16 19 C -0.48 -24.82 9.05 23.46 0.21 -24.60 16 20 H 0.08 4.12 7.87 -2.91 -0.02 4.09 16 21 C 0.04 1.75 5.23 85.35 0.45 2.19 16 22 N -0.81 -39.67 10.94 21.87 0.24 -39.43 16 23 Si 0.99 35.68 29.58 68.60 2.03 37.71 16 24 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 25 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 26 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 27 C -0.25 -12.47 9.73 22.47 0.22 -12.25 16 28 C -0.04 -1.80 9.52 22.25 0.21 -1.59 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 1.39 6.11 -2.38 -0.01 1.37 16 31 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 32 H 0.08 1.22 8.11 -2.38 -0.02 1.20 16 33 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.13 6.79 -2.38 -0.02 1.12 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 1.00 6.28 -2.39 -0.02 0.98 16 40 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.06 1.60 5.31 -2.39 -0.01 1.58 16 42 H 0.05 1.41 5.93 -2.39 -0.01 1.40 16 43 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 44 H 0.05 1.50 6.82 -2.39 -0.02 1.48 16 45 H 0.07 2.00 6.02 -2.39 -0.01 1.99 16 46 H 0.41 13.18 3.20 -92.71 -0.30 12.89 16 47 H 0.12 4.50 6.37 -2.91 -0.02 4.48 16 48 H 0.11 5.73 6.33 -2.91 -0.02 5.71 16 49 H 0.29 12.92 8.29 -92.71 -0.77 12.16 16 50 H 0.10 4.95 8.06 -2.92 -0.02 4.93 16 51 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16 Total: -1.00 -60.34 381.38 4.00 -56.34 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: 0.63 Total: 44.98 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 5.33 Total: -30.99 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -3.93 Total: -78.45 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.06 Total: -29.60 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Total: -60.34 4.00 -56.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344593442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.576 kcal (2) G-P(sol) polarization free energy of solvation -60.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds