Wall clock time and date at job start Tue Mar 31 2020 16:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46849 * 110.99332 * 2 1 4 4 C 1.53035 * 109.51307 * 185.84880 * 3 2 1 5 5 C 1.53116 * 109.28337 * 300.81804 * 4 3 2 6 6 C 1.53118 * 109.16194 * 57.65227 * 5 4 3 7 7 C 1.52998 * 109.50400 * 182.40911 * 6 5 4 8 8 C 1.52998 * 109.53502 * 62.30881 * 6 5 4 9 9 C 1.46853 * 110.99967 * 124.20580 * 2 1 3 10 10 H 1.08996 * 109.46068 * 294.16258 * 9 2 1 11 11 C 1.52997 * 109.46179 * 54.14290 * 9 2 1 12 12 N 1.46505 * 109.46885 * 188.18984 * 11 9 2 13 13 C 1.34771 * 120.00017 * 187.34543 * 12 11 9 14 14 O 1.21551 * 119.99820 * 0.02562 * 13 12 11 15 15 C 1.47888 * 120.00252 * 180.02562 * 13 12 11 16 16 C 1.39922 * 120.02189 * 359.97438 * 15 13 12 17 17 C 1.38332 * 120.35832 * 180.02562 * 16 15 13 18 18 C 1.37752 * 120.40756 * 359.97438 * 17 16 15 19 19 C 1.40743 * 120.04436 * 359.97438 * 18 17 16 20 20 C 1.41439 * 120.17770 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00115 * 27.83472 * 20 19 18 22 22 C 1.39939 * 119.99714 * 207.83421 * 20 19 18 23 23 N 1.30821 * 120.00549 * 15.65850 * 22 20 19 24 24 Si 1.86803 * 119.99719 * 195.66015 * 22 20 19 25 25 H 1.48496 * 109.47577 * 90.00124 * 24 22 20 26 26 H 1.48508 * 109.47052 * 210.00319 * 24 22 20 27 27 H 1.48508 * 109.47075 * 329.99528 * 24 22 20 28 28 C 1.38993 * 120.02846 * 179.73268 * 15 13 12 29 29 H 1.09005 * 109.46789 * 285.98269 * 1 2 3 30 30 H 1.08995 * 109.47426 * 45.98333 * 1 2 3 31 31 H 1.08992 * 109.47202 * 165.98937 * 1 2 3 32 32 H 1.08998 * 109.46921 * 65.83592 * 3 2 1 33 33 H 1.08995 * 109.45733 * 305.86162 * 3 2 1 34 34 H 1.09004 * 109.50327 * 180.87257 * 4 3 2 35 35 H 1.09004 * 109.50218 * 60.76025 * 4 3 2 36 36 H 1.09008 * 109.51858 * 297.74923 * 5 4 3 37 37 H 1.09000 * 109.52635 * 177.56254 * 5 4 3 38 38 H 1.09002 * 109.47146 * 191.46432 * 7 6 5 39 39 H 1.09002 * 109.47009 * 311.46300 * 7 6 5 40 40 H 1.08995 * 109.47640 * 71.46313 * 7 6 5 41 41 H 1.09001 * 109.47354 * 300.18192 * 8 6 5 42 42 H 1.09004 * 109.46926 * 60.17199 * 8 6 5 43 43 H 1.09002 * 109.47530 * 180.17640 * 8 6 5 44 44 H 1.09005 * 109.47349 * 68.19404 * 11 9 2 45 45 H 1.09001 * 109.47534 * 308.19261 * 11 9 2 46 46 H 0.96997 * 119.99923 * 7.35725 * 12 11 9 47 47 H 1.08006 * 119.82137 * 0.02562 * 16 15 13 48 48 H 1.08000 * 119.79373 * 180.02562 * 17 16 15 49 49 H 1.08001 * 119.97642 * 179.97438 * 18 17 16 50 50 H 0.96997 * 120.00575 * 179.97438 * 23 22 20 51 51 H 1.08006 * 120.19770 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5179 1.3342 -0.1470 5 6 4.1189 0.5370 1.0140 6 6 3.5182 -0.8714 1.0206 7 6 4.0682 -1.6558 2.2135 8 6 3.8873 -1.5912 -0.2780 9 6 1.9953 -0.7707 1.1338 10 1 1.7327 -0.2706 2.0660 11 6 1.3891 -2.1754 1.1206 12 7 1.7578 -2.8780 2.3522 13 6 1.4607 -4.1845 2.4974 14 8 0.8873 -4.7801 1.6063 15 6 1.8324 -4.8936 3.7408 16 6 2.4929 -4.2087 4.7666 17 6 2.8443 -4.8653 5.9324 18 6 2.5477 -6.2003 6.0972 19 6 1.8827 -6.9056 5.0768 20 6 1.5763 -8.2764 5.2433 21 1 1.4224 -8.6789 6.2335 22 6 1.4726 -9.1109 4.1248 23 7 1.9485 -8.7202 2.9705 24 14 0.6543 -10.7830 4.2798 25 1 -0.7991 -10.6503 4.0059 26 1 1.2587 -11.7225 3.3013 27 1 0.8532 -11.3058 5.6556 28 6 1.5214 -6.2397 3.8934 29 1 -0.3633 0.2830 0.9880 30 1 -0.3634 0.7140 -0.7390 31 1 -0.3633 -0.9970 -0.2488 32 1 1.7325 1.8609 0.9376 33 1 1.5631 1.9257 -0.8329 34 1 3.9098 2.3512 -0.1314 35 1 3.7810 0.8567 -1.0909 36 1 3.8889 1.0355 1.9557 37 1 5.1998 0.4714 0.8899 38 1 3.8064 -2.7086 2.1081 39 1 5.1529 -1.5527 2.2471 40 1 3.6375 -1.2648 3.1353 41 1 3.4964 -1.0313 -1.1276 42 1 4.9721 -1.6626 -0.3581 43 1 3.4566 -2.5925 -0.2736 44 1 1.7685 -2.7268 0.2603 45 1 0.3035 -2.1021 1.0552 46 1 2.2155 -2.4028 3.0632 47 1 2.7298 -3.1617 4.6476 48 1 3.3536 -4.3276 6.7185 49 1 2.8256 -6.7062 7.0101 50 1 1.8769 -9.2988 2.1953 51 1 1.0077 -6.7713 3.1059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344665569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:05 Heat of formation + Delta-G solvation = -14.706696 kcal Electronic energy + Delta-G solvation = -29316.555227 eV Core-core repulsion = 25601.178819 eV Total energy + Delta-G solvation = -3715.376407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60659 -38.88910 -36.98695 -35.31913 -34.56914 -33.69135 -31.99248 -30.19209 -29.44580 -28.16454 -27.27664 -26.77750 -25.54272 -25.07705 -22.46671 -21.59897 -21.41967 -20.86443 -19.56725 -18.53096 -17.64546 -16.25911 -15.94076 -15.84707 -15.65410 -15.07948 -14.92293 -14.66592 -14.45471 -14.21537 -13.79523 -13.54222 -13.35833 -13.22876 -13.05613 -12.72358 -12.54163 -12.49987 -12.37794 -12.18959 -11.92226 -11.81016 -11.63780 -11.47671 -11.35835 -11.18126 -11.12449 -11.03958 -10.71965 -10.56759 -10.48891 -10.31815 -10.14842 -10.00114 -9.67599 -9.22258 -9.01217 -8.50298 -8.47958 -7.61680 -7.49824 -6.77103 -4.41220 2.21691 2.81963 3.09200 3.12193 3.15745 3.40361 3.88853 3.94351 4.03263 4.44722 4.53434 4.64161 4.66755 4.83257 5.01927 5.05352 5.19931 5.24016 5.30917 5.34647 5.41756 5.48509 5.59467 5.61255 5.66478 5.68709 5.74203 5.77382 5.84277 5.89656 5.93029 5.97200 6.06426 6.08485 6.16740 6.22494 6.25564 6.38951 6.50140 6.71466 6.77014 6.88041 6.95757 7.00731 7.02602 7.21686 7.38447 7.69505 7.76108 7.91805 8.10785 8.19944 8.51183 8.81915 8.83838 8.97889 10.18714 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.002844 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.687144 B = 9843.906730 C =10377.534918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.058 3.942 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.054 4.054 7 C -0.159 4.159 8 C -0.137 4.137 9 C 0.086 3.914 10 H 0.044 0.956 11 C 0.121 3.879 12 N -0.736 5.736 13 C 0.562 3.438 14 O -0.546 6.546 15 C -0.128 4.128 16 C -0.215 4.215 17 C -0.099 4.099 18 C -0.209 4.209 19 C 0.100 3.900 20 C -0.463 4.463 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.787 5.787 24 Si 0.911 3.089 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.087 4.087 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.401 0.599 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.284 0.716 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 18.142 -5.307 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.070 4.070 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.055 4.055 7 C -0.217 4.217 8 C -0.194 4.194 9 C -0.022 4.022 10 H 0.062 0.938 11 C -0.003 4.003 12 N -0.393 5.393 13 C 0.352 3.648 14 O -0.424 6.424 15 C -0.131 4.131 16 C -0.235 4.235 17 C -0.117 4.117 18 C -0.229 4.229 19 C 0.098 3.902 20 C -0.492 4.492 21 H 0.099 0.901 22 C -0.145 4.145 23 N -0.411 5.411 24 Si 0.735 3.265 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.186 1.186 28 C -0.108 4.108 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.239 0.761 47 H 0.106 0.894 48 H 0.111 0.889 49 H 0.114 0.886 50 H 0.095 0.905 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.007 17.415 -6.647 18.748 hybrid contribution -0.348 -0.003 1.138 1.190 sum 1.659 17.412 -5.509 18.338 Atomic orbital electron populations 1.22472 0.87174 1.03056 1.00217 1.61809 1.07587 1.13278 1.42935 1.22099 0.95755 0.88888 1.00295 1.21647 0.94338 0.99894 0.99849 1.21682 1.00044 0.94906 0.98218 1.20547 0.92878 0.95220 0.96811 1.22290 1.00959 1.02023 0.96380 1.21881 1.00343 1.00572 0.96647 1.21844 0.94851 0.93728 0.91822 0.93779 1.21366 0.99161 0.91018 0.88731 1.46344 1.62527 1.11142 1.19333 1.18835 0.77600 0.80740 0.87610 1.90698 1.41931 1.66854 1.42886 1.19474 1.05032 0.95411 0.93211 1.20339 1.09818 0.97541 0.95831 1.20435 1.00209 0.94844 0.96222 1.21133 1.06128 0.94597 1.01031 1.17600 0.88655 0.93229 0.90723 1.19570 1.42554 0.93044 0.94077 0.90123 1.25936 0.93199 1.00745 0.94658 1.69773 1.32469 1.37720 1.01168 0.86273 0.80184 0.80848 0.79202 1.19195 1.20242 1.18637 1.21587 0.99188 0.90790 0.99189 0.95455 0.91454 0.90568 0.95094 0.90722 0.91738 0.90656 0.92363 0.91570 0.90116 0.92336 0.92983 0.91329 0.93325 0.92229 0.90057 0.92067 0.76055 0.89408 0.88926 0.88600 0.90491 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.83 60.06 0.53 0.71 16 2 N -0.53 -5.49 4.03 -234.93 -0.95 -6.43 16 3 C 0.06 0.49 5.45 -3.83 -0.02 0.47 16 4 C -0.12 -0.96 5.74 -26.65 -0.15 -1.12 16 5 C -0.11 -0.99 4.76 -26.61 -0.13 -1.12 16 6 C -0.05 -0.58 0.54 -154.43 -0.08 -0.67 16 7 C -0.16 -1.86 6.88 37.16 0.26 -1.60 16 8 C -0.14 -1.58 7.65 37.16 0.28 -1.30 16 9 C 0.09 0.99 1.27 -67.72 -0.09 0.90 16 10 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 11 C 0.12 1.76 4.65 -4.04 -0.02 1.74 16 12 N -0.74 -12.20 3.47 -61.23 -0.21 -12.41 16 13 C 0.56 12.26 7.77 -12.31 -0.10 12.17 16 14 O -0.55 -13.75 16.30 5.32 0.09 -13.66 16 15 C -0.13 -3.01 5.87 -105.04 -0.62 -3.62 16 16 C -0.22 -4.47 9.55 -38.92 -0.37 -4.84 16 17 C -0.10 -2.09 10.01 -39.72 -0.40 -2.48 16 18 C -0.21 -4.94 9.78 -38.81 -0.38 -5.32 16 19 C 0.10 2.65 5.54 -106.87 -0.59 2.06 16 20 C -0.46 -12.19 9.05 -37.73 -0.34 -12.53 16 21 H 0.08 2.02 7.89 -52.49 -0.41 1.60 16 22 C 0.07 1.86 5.16 -17.35 -0.09 1.77 16 23 N -0.79 -20.96 11.07 55.55 0.61 -20.35 16 24 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 28 C -0.09 -2.33 8.21 -38.44 -0.32 -2.64 16 29 H 0.03 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.07 0.54 7.91 -51.93 -0.41 0.13 16 31 H 0.08 0.80 6.65 -51.93 -0.35 0.45 16 32 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.56 7.97 -51.93 -0.41 0.15 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.65 6.58 -51.93 -0.34 0.30 16 36 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.16 6.08 -51.93 -0.32 0.85 16 39 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.05 0.56 7.12 -51.93 -0.37 0.19 16 41 H 0.07 0.77 6.01 -51.93 -0.31 0.45 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.81 6.24 -51.93 -0.32 0.49 16 44 H 0.08 1.31 5.96 -51.93 -0.31 1.00 16 45 H 0.06 0.91 6.08 -51.93 -0.32 0.60 16 46 H 0.40 5.89 3.74 -40.82 -0.15 5.74 16 47 H 0.09 1.51 6.38 -52.48 -0.33 1.18 16 48 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 49 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 50 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 51 H 0.13 3.78 5.93 -52.48 -0.31 3.47 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -29.05 382.50 -10.37 -39.42 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -8.03 Total: 11.18 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.62 Total: -17.43 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.54 Total: -39.19 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.05 -10.37 -39.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344665569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.717 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds