Wall clock time and date at job start Tue Mar 31 2020 16:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46849 * 110.99332 * 2 1 4 4 C 1.53035 * 109.51307 * 185.84880 * 3 2 1 5 5 C 1.53116 * 109.28337 * 300.81804 * 4 3 2 6 6 C 1.53118 * 109.16194 * 57.65227 * 5 4 3 7 7 C 1.52998 * 109.50400 * 182.40911 * 6 5 4 8 8 C 1.52998 * 109.53502 * 62.30881 * 6 5 4 9 9 C 1.46853 * 110.99967 * 124.20580 * 2 1 3 10 10 H 1.08996 * 109.46068 * 294.16258 * 9 2 1 11 11 C 1.52997 * 109.46179 * 54.14290 * 9 2 1 12 12 N 1.46505 * 109.46885 * 188.18984 * 11 9 2 13 13 C 1.34771 * 120.00017 * 187.34543 * 12 11 9 14 14 O 1.21551 * 119.99820 * 0.02562 * 13 12 11 15 15 C 1.47888 * 120.00252 * 180.02562 * 13 12 11 16 16 C 1.39922 * 120.02189 * 359.97438 * 15 13 12 17 17 C 1.38332 * 120.35832 * 180.02562 * 16 15 13 18 18 C 1.37752 * 120.40756 * 359.97438 * 17 16 15 19 19 C 1.40743 * 120.04436 * 359.97438 * 18 17 16 20 20 C 1.41439 * 120.17770 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00115 * 27.83472 * 20 19 18 22 22 C 1.39939 * 119.99714 * 207.83421 * 20 19 18 23 23 N 1.30821 * 120.00549 * 15.65850 * 22 20 19 24 24 Si 1.86803 * 119.99719 * 195.66015 * 22 20 19 25 25 H 1.48496 * 109.47577 * 90.00124 * 24 22 20 26 26 H 1.48508 * 109.47052 * 210.00319 * 24 22 20 27 27 H 1.48508 * 109.47075 * 329.99528 * 24 22 20 28 28 C 1.38993 * 120.02846 * 179.73268 * 15 13 12 29 29 H 1.09005 * 109.46789 * 285.98269 * 1 2 3 30 30 H 1.08995 * 109.47426 * 45.98333 * 1 2 3 31 31 H 1.08992 * 109.47202 * 165.98937 * 1 2 3 32 32 H 1.08998 * 109.46921 * 65.83592 * 3 2 1 33 33 H 1.08995 * 109.45733 * 305.86162 * 3 2 1 34 34 H 1.09004 * 109.50327 * 180.87257 * 4 3 2 35 35 H 1.09004 * 109.50218 * 60.76025 * 4 3 2 36 36 H 1.09008 * 109.51858 * 297.74923 * 5 4 3 37 37 H 1.09000 * 109.52635 * 177.56254 * 5 4 3 38 38 H 1.09002 * 109.47146 * 191.46432 * 7 6 5 39 39 H 1.09002 * 109.47009 * 311.46300 * 7 6 5 40 40 H 1.08995 * 109.47640 * 71.46313 * 7 6 5 41 41 H 1.09001 * 109.47354 * 300.18192 * 8 6 5 42 42 H 1.09004 * 109.46926 * 60.17199 * 8 6 5 43 43 H 1.09002 * 109.47530 * 180.17640 * 8 6 5 44 44 H 1.09005 * 109.47349 * 68.19404 * 11 9 2 45 45 H 1.09001 * 109.47534 * 308.19261 * 11 9 2 46 46 H 0.96997 * 119.99923 * 7.35725 * 12 11 9 47 47 H 1.08006 * 119.82137 * 0.02562 * 16 15 13 48 48 H 1.08000 * 119.79373 * 180.02562 * 17 16 15 49 49 H 1.08001 * 119.97642 * 179.97438 * 18 17 16 50 50 H 0.96997 * 120.00575 * 179.97438 * 23 22 20 51 51 H 1.08006 * 120.19770 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5179 1.3342 -0.1470 5 6 4.1189 0.5370 1.0140 6 6 3.5182 -0.8714 1.0206 7 6 4.0682 -1.6558 2.2135 8 6 3.8873 -1.5912 -0.2780 9 6 1.9953 -0.7707 1.1338 10 1 1.7327 -0.2706 2.0660 11 6 1.3891 -2.1754 1.1206 12 7 1.7578 -2.8780 2.3522 13 6 1.4607 -4.1845 2.4974 14 8 0.8873 -4.7801 1.6063 15 6 1.8324 -4.8936 3.7408 16 6 2.4929 -4.2087 4.7666 17 6 2.8443 -4.8653 5.9324 18 6 2.5477 -6.2003 6.0972 19 6 1.8827 -6.9056 5.0768 20 6 1.5763 -8.2764 5.2433 21 1 1.4224 -8.6789 6.2335 22 6 1.4726 -9.1109 4.1248 23 7 1.9485 -8.7202 2.9705 24 14 0.6543 -10.7830 4.2798 25 1 -0.7991 -10.6503 4.0059 26 1 1.2587 -11.7225 3.3013 27 1 0.8532 -11.3058 5.6556 28 6 1.5214 -6.2397 3.8934 29 1 -0.3633 0.2830 0.9880 30 1 -0.3634 0.7140 -0.7390 31 1 -0.3633 -0.9970 -0.2488 32 1 1.7325 1.8609 0.9376 33 1 1.5631 1.9257 -0.8329 34 1 3.9098 2.3512 -0.1314 35 1 3.7810 0.8567 -1.0909 36 1 3.8889 1.0355 1.9557 37 1 5.1998 0.4714 0.8899 38 1 3.8064 -2.7086 2.1081 39 1 5.1529 -1.5527 2.2471 40 1 3.6375 -1.2648 3.1353 41 1 3.4964 -1.0313 -1.1276 42 1 4.9721 -1.6626 -0.3581 43 1 3.4566 -2.5925 -0.2736 44 1 1.7685 -2.7268 0.2603 45 1 0.3035 -2.1021 1.0552 46 1 2.2155 -2.4028 3.0632 47 1 2.7298 -3.1617 4.6476 48 1 3.3536 -4.3276 6.7185 49 1 2.8256 -6.7062 7.0101 50 1 1.8769 -9.2988 2.1953 51 1 1.0077 -6.7713 3.1059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344665569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:03 Heat of formation + Delta-G solvation = -30.733155 kcal Electronic energy + Delta-G solvation = -29317.250186 eV Core-core repulsion = 25601.178819 eV Total energy + Delta-G solvation = -3716.071367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.68280 -40.43170 -38.78331 -36.37488 -35.73389 -35.51658 -33.12866 -31.87633 -31.28967 -29.26934 -28.24230 -27.52137 -27.21710 -26.36653 -23.99372 -22.87021 -22.42572 -22.28664 -21.22317 -19.69721 -19.16753 -17.91189 -17.34786 -16.98894 -16.79009 -16.56905 -16.31326 -15.94343 -15.62184 -15.51965 -15.09138 -14.94651 -14.76728 -14.32305 -14.30245 -14.20537 -13.98396 -13.53322 -13.42471 -13.28666 -13.14702 -12.96430 -12.90115 -12.83292 -12.74121 -12.52603 -12.34323 -12.19724 -12.14470 -11.92987 -11.83722 -11.49981 -11.35795 -11.14652 -11.09801 -11.05998 -10.78777 -9.99724 -9.44635 -9.37467 -9.28449 -8.64994 -6.39182 0.37195 1.00237 1.36080 1.47076 1.50364 2.09514 2.13452 2.19820 2.79613 3.01690 3.53607 3.62377 3.69003 3.87514 4.02410 4.10916 4.15166 4.23025 4.34681 4.39513 4.42719 4.50750 4.54929 4.56709 4.63209 4.69083 4.75419 4.80991 4.88686 4.92402 4.94462 4.98603 5.02828 5.08078 5.09389 5.16203 5.17612 5.18558 5.30327 5.31062 5.37003 5.41939 5.45319 5.51736 5.62139 5.85441 5.91092 6.04119 6.06063 6.13739 6.28394 6.49973 6.66579 6.88610 6.94194 7.29825 8.32745 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.002844 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.687144 B = 9843.906730 C =10377.534918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.541 5.541 3 C 0.057 3.943 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.053 4.053 7 C -0.160 4.160 8 C -0.133 4.133 9 C 0.097 3.903 10 H 0.052 0.948 11 C 0.122 3.878 12 N -0.708 5.708 13 C 0.558 3.442 14 O -0.590 6.590 15 C -0.138 4.138 16 C -0.193 4.193 17 C -0.095 4.095 18 C -0.213 4.213 19 C 0.069 3.931 20 C -0.500 4.500 21 H 0.084 0.916 22 C 0.029 3.971 23 N -0.830 5.830 24 Si 0.983 3.017 25 H -0.267 1.267 26 H -0.270 1.270 27 H -0.250 1.250 28 C -0.125 4.125 29 H 0.029 0.971 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.029 0.971 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.412 0.588 47 H 0.133 0.867 48 H 0.140 0.860 49 H 0.110 0.890 50 H 0.285 0.715 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.329 21.394 -4.089 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.266 5.266 3 C -0.071 4.071 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.053 4.053 7 C -0.218 4.218 8 C -0.190 4.190 9 C -0.012 4.012 10 H 0.070 0.930 11 C -0.001 4.001 12 N -0.364 5.364 13 C 0.348 3.652 14 O -0.472 6.472 15 C -0.142 4.142 16 C -0.213 4.213 17 C -0.113 4.113 18 C -0.233 4.233 19 C 0.067 3.933 20 C -0.529 4.529 21 H 0.102 0.898 22 C -0.186 4.186 23 N -0.456 5.456 24 Si 0.803 3.197 25 H -0.192 1.192 26 H -0.195 1.195 27 H -0.173 1.173 28 C -0.146 4.146 29 H 0.047 0.953 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.254 0.746 47 H 0.151 0.849 48 H 0.158 0.842 49 H 0.128 0.872 50 H 0.096 0.904 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.128 20.732 -5.404 21.651 hybrid contribution -0.623 -0.785 0.760 1.257 sum 2.505 19.946 -4.644 20.633 Atomic orbital electron populations 1.22473 0.86883 1.02663 1.00907 1.61803 1.07989 1.14588 1.42242 1.22197 0.96131 0.87585 1.01155 1.21652 0.93905 1.00857 0.99072 1.21650 1.00389 0.93237 0.99093 1.20550 0.92386 0.96567 0.95841 1.22271 1.01993 1.00121 0.97384 1.21828 1.00586 0.99037 0.97541 1.21712 0.95151 0.91576 0.92806 0.92981 1.21461 0.99136 0.92659 0.86873 1.46104 1.60743 1.09323 1.20254 1.18752 0.77494 0.82188 0.86755 1.90673 1.44184 1.68211 1.44139 1.19757 1.04946 0.94763 0.94690 1.20820 1.06713 0.99366 0.94383 1.20927 0.99150 0.93956 0.97272 1.21446 1.05232 0.95943 1.00630 1.17937 0.89820 0.93929 0.91639 1.19846 1.44671 0.93773 0.94652 0.89803 1.26831 0.93166 1.04604 0.93971 1.69880 1.34321 1.39333 1.02020 0.85195 0.78712 0.76042 0.79727 1.19199 1.19482 1.17333 1.21370 1.01629 0.92388 0.99170 0.95258 0.89578 0.92246 0.94533 0.89401 0.89668 0.91308 0.91467 0.90798 0.93269 0.91155 0.91558 0.91004 0.92593 0.95202 0.92020 0.92469 0.74613 0.84947 0.84199 0.87231 0.90437 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.83 127.69 1.13 1.46 16 2 N -0.54 -10.14 4.03 -897.18 -3.62 -13.76 16 3 C 0.06 0.78 5.45 86.32 0.47 1.25 16 4 C -0.12 -1.48 5.74 30.64 0.18 -1.30 16 5 C -0.11 -1.52 4.76 30.67 0.15 -1.38 16 6 C -0.05 -1.03 0.54 -52.13 -0.03 -1.06 16 7 C -0.16 -3.36 6.88 71.98 0.50 -2.87 16 8 C -0.13 -2.98 7.65 71.98 0.55 -2.43 16 9 C 0.10 2.04 1.27 44.94 0.06 2.10 16 10 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 11 C 0.12 3.57 4.65 86.38 0.40 3.97 16 12 N -0.71 -23.19 3.47 -465.92 -1.62 -24.81 16 13 C 0.56 25.13 7.77 86.80 0.67 25.81 16 14 O -0.59 -31.65 16.30 -3.88 -0.06 -31.71 16 15 C -0.14 -6.61 5.87 -20.13 -0.12 -6.73 16 16 C -0.19 -7.56 9.55 22.70 0.22 -7.34 16 17 C -0.10 -3.73 10.01 22.18 0.22 -3.51 16 18 C -0.21 -9.92 9.78 22.77 0.22 -9.69 16 19 C 0.07 3.77 5.54 -21.32 -0.12 3.65 16 20 C -0.50 -27.49 9.05 23.47 0.21 -27.28 16 21 H 0.08 4.35 7.89 -2.91 -0.02 4.32 16 22 C 0.03 1.52 5.16 85.26 0.44 1.96 16 23 N -0.83 -47.14 11.07 21.82 0.24 -46.90 16 24 Si 0.98 40.37 29.59 68.60 2.03 42.40 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 26 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 27 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 28 C -0.12 -7.03 8.21 23.01 0.19 -6.84 16 29 H 0.03 0.50 8.08 -2.38 -0.02 0.48 16 30 H 0.09 1.19 7.91 -2.39 -0.02 1.17 16 31 H 0.06 1.24 6.65 -2.39 -0.02 1.23 16 32 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 1.01 7.97 -2.39 -0.02 0.99 16 34 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.07 0.98 6.58 -2.38 -0.02 0.97 16 36 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 1.35 6.08 -2.39 -0.01 1.34 16 39 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.07 1.18 7.12 -2.39 -0.02 1.17 16 41 H 0.07 1.54 6.01 -2.39 -0.01 1.53 16 42 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.03 0.83 6.24 -2.39 -0.01 0.82 16 44 H 0.06 2.09 5.96 -2.38 -0.01 2.08 16 45 H 0.06 1.74 6.08 -2.39 -0.01 1.72 16 46 H 0.41 11.22 3.74 -92.71 -0.35 10.87 16 47 H 0.13 3.95 6.38 -2.91 -0.02 3.93 16 48 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 49 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 50 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 51 H 0.09 5.89 5.93 -2.91 -0.02 5.87 16 Total: -1.00 -68.83 382.50 2.90 -65.93 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.58 Total: 39.07 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 5.34 Total: -30.22 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -4.99 Total: -85.47 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.06 Total: -31.71 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -68.83 2.90 -65.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344665569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.201 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds