Wall clock time and date at job start Tue Mar 31 2020 16:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46845 * 111.00222 * 2 1 4 4 C 1.53043 * 109.52467 * 174.15798 * 3 2 1 5 5 C 1.53118 * 109.27774 * 59.18080 * 4 3 2 6 6 C 1.53119 * 109.16152 * 302.34550 * 5 4 3 7 7 C 1.53001 * 109.50534 * 177.59544 * 6 5 4 8 8 C 1.52999 * 109.50145 * 297.67459 * 6 5 4 9 9 C 1.46852 * 111.00078 * 235.78718 * 2 1 3 10 10 H 1.08999 * 109.45811 * 65.82752 * 9 2 1 11 11 C 1.52989 * 109.46276 * 305.85694 * 9 2 1 12 12 N 1.46500 * 109.47370 * 307.89300 * 11 9 2 13 13 C 1.34777 * 120.00177 * 185.75911 * 12 11 9 14 14 O 1.21552 * 119.99782 * 0.02562 * 13 12 11 15 15 C 1.47884 * 120.00151 * 180.02562 * 13 12 11 16 16 C 1.39917 * 120.02267 * 0.02562 * 15 13 12 17 17 C 1.38336 * 120.35455 * 180.02562 * 16 15 13 18 18 C 1.37748 * 120.41426 * 359.97438 * 17 16 15 19 19 C 1.40750 * 120.04126 * 359.97438 * 18 17 16 20 20 C 1.41437 * 120.18147 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99394 * 27.17222 * 20 19 18 22 22 C 1.39929 * 120.00328 * 207.18039 * 20 19 18 23 23 N 1.30836 * 119.99831 * 11.91869 * 22 20 19 24 24 Si 1.86793 * 120.00232 * 191.92329 * 22 20 19 25 25 H 1.48503 * 109.47222 * 59.99804 * 24 22 20 26 26 H 1.48498 * 109.47648 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47211 * 299.99539 * 24 22 20 28 28 C 1.38999 * 120.02547 * 179.72989 * 15 13 12 29 29 H 1.09006 * 109.46903 * 62.69888 * 1 2 3 30 30 H 1.08996 * 109.47373 * 302.69569 * 1 2 3 31 31 H 1.08995 * 109.47297 * 182.69337 * 1 2 3 32 32 H 1.09003 * 109.46527 * 294.17001 * 3 2 1 33 33 H 1.09002 * 109.46655 * 54.14565 * 3 2 1 34 34 H 1.08998 * 109.50183 * 179.11481 * 4 3 2 35 35 H 1.08998 * 109.50317 * 299.24108 * 4 3 2 36 36 H 1.09001 * 109.52826 * 62.24925 * 5 4 3 37 37 H 1.09003 * 109.52683 * 182.44196 * 5 4 3 38 38 H 1.08992 * 109.47222 * 60.00258 * 7 6 5 39 39 H 1.09004 * 109.46913 * 180.02562 * 7 6 5 40 40 H 1.08999 * 109.47115 * 299.99898 * 7 6 5 41 41 H 1.08998 * 109.47018 * 68.21043 * 8 6 5 42 42 H 1.09007 * 109.47340 * 188.20357 * 8 6 5 43 43 H 1.09000 * 109.47294 * 308.20573 * 8 6 5 44 44 H 1.09003 * 109.47177 * 67.89590 * 11 9 2 45 45 H 1.08999 * 109.47339 * 187.89520 * 11 9 2 46 46 H 0.96999 * 119.99747 * 5.76206 * 12 11 9 47 47 H 1.07999 * 119.82380 * 0.02562 * 16 15 13 48 48 H 1.08004 * 119.79249 * 179.97438 * 17 16 15 49 49 H 1.07999 * 119.97752 * 180.02562 * 18 17 16 50 50 H 0.97003 * 119.99424 * 180.02562 * 23 22 20 51 51 H 1.07994 * 120.20071 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 3.5182 -0.8715 -1.0208 7 6 4.0681 -1.6559 -2.2138 8 6 3.8884 -1.5907 0.2779 9 6 1.9952 -0.7709 -1.1337 10 1 1.7325 -0.2709 -2.0660 11 6 1.3891 -2.1755 -1.1203 12 7 1.5791 -2.7768 0.2020 13 6 1.2277 -4.0604 0.4154 14 8 0.7536 -4.7191 -0.4894 15 6 1.4190 -4.6672 1.7504 16 6 1.9642 -3.9091 2.7923 17 6 2.1467 -4.4700 4.0437 18 6 1.7935 -5.7805 4.2787 19 6 1.2425 -6.5584 3.2430 20 6 0.8783 -7.9041 3.4812 21 1 0.5995 -8.2201 4.4756 22 6 0.8794 -8.8261 2.4286 23 7 1.4334 -8.5131 1.2854 24 14 0.0897 -10.5036 2.6554 25 1 -1.3490 -10.3335 2.9818 26 1 0.2228 -11.2872 1.4011 27 1 0.7669 -11.2238 3.7636 28 6 1.0516 -5.9892 1.9725 29 1 -0.3633 0.4714 -0.9133 30 1 -0.3634 0.5551 0.8648 31 1 -0.3633 -1.0265 0.0483 32 1 1.7326 1.8608 -0.9376 33 1 1.5635 1.9258 0.8330 34 1 3.9099 2.3511 0.1310 35 1 3.7813 0.8567 1.0907 36 1 3.8888 1.0353 -1.9560 37 1 5.1998 0.4713 -0.8904 38 1 5.1530 -1.7244 -2.1346 39 1 3.6398 -2.6583 -2.2181 40 1 3.8028 -1.1439 -3.1387 41 1 3.3754 -1.1167 1.1147 42 1 3.5876 -2.6364 0.2127 43 1 4.9659 -1.5315 0.4316 44 1 0.3236 -2.1135 -1.3416 45 1 1.8814 -2.7909 -1.8734 46 1 1.9578 -2.2512 0.9239 47 1 2.2442 -2.8806 2.6188 48 1 2.5687 -3.8767 4.8414 49 1 1.9386 -6.2112 5.2584 50 1 1.4338 -9.1521 0.5556 51 1 0.6256 -6.5764 1.1726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344665571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:08 Heat of formation + Delta-G solvation = -12.095660 kcal Electronic energy + Delta-G solvation = -29729.742020 eV Core-core repulsion = 26014.478836 eV Total energy + Delta-G solvation = -3715.263184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.67571 -38.73237 -36.90363 -35.15407 -34.52994 -33.64686 -31.93075 -30.10430 -29.35946 -28.20977 -27.28223 -26.68585 -25.51346 -25.05393 -22.51253 -21.56411 -21.21318 -20.78584 -19.38779 -18.56417 -17.62894 -16.30881 -15.97927 -15.66511 -15.58610 -15.09482 -14.70766 -14.54095 -14.44274 -14.12415 -13.81556 -13.54047 -13.41052 -13.11143 -12.92486 -12.63864 -12.47343 -12.43513 -12.38546 -12.09790 -12.00543 -11.77578 -11.56262 -11.42290 -11.34614 -11.10202 -11.08773 -11.02918 -10.70361 -10.56832 -10.44502 -10.29773 -10.11827 -9.93449 -9.63799 -9.19640 -8.91550 -8.46149 -8.34909 -7.54700 -7.42254 -6.69220 -4.37339 2.29279 2.88083 3.10920 3.12971 3.19990 3.60333 3.94759 3.97931 4.01576 4.44742 4.54610 4.66939 4.73463 4.87062 5.04712 5.08572 5.27888 5.30385 5.32767 5.35802 5.46508 5.50948 5.63243 5.65988 5.68077 5.70752 5.75238 5.81495 5.88711 5.90433 5.93925 5.99238 6.07245 6.13000 6.18360 6.22146 6.32542 6.35760 6.55335 6.77373 6.86857 6.93856 7.04005 7.07194 7.12448 7.28902 7.45212 7.77206 7.84553 8.00374 8.22222 8.31921 8.57876 8.87365 8.90000 9.09424 10.24298 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.003070 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.609923 B = 9118.773771 C = 9457.148645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.535 5.535 3 C 0.058 3.942 4 C -0.120 4.120 5 C -0.110 4.110 6 C -0.054 4.054 7 C -0.146 4.146 8 C -0.155 4.155 9 C 0.083 3.917 10 H 0.052 0.948 11 C 0.124 3.876 12 N -0.724 5.724 13 C 0.557 3.443 14 O -0.552 6.552 15 C -0.129 4.129 16 C -0.210 4.210 17 C -0.102 4.102 18 C -0.209 4.209 19 C 0.098 3.902 20 C -0.462 4.462 21 H 0.079 0.921 22 C 0.071 3.929 23 N -0.791 5.791 24 Si 0.912 3.088 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.266 1.266 28 C -0.088 4.088 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.412 0.588 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.283 0.717 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 17.836 -5.074 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.070 4.070 4 C -0.158 4.158 5 C -0.147 4.147 6 C -0.055 4.055 7 C -0.204 4.204 8 C -0.212 4.212 9 C -0.025 4.025 10 H 0.069 0.931 11 C -0.001 4.001 12 N -0.382 5.382 13 C 0.348 3.652 14 O -0.431 6.431 15 C -0.132 4.132 16 C -0.230 4.230 17 C -0.120 4.120 18 C -0.229 4.229 19 C 0.095 3.905 20 C -0.492 4.492 21 H 0.097 0.903 22 C -0.147 4.147 23 N -0.416 5.416 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.191 1.191 28 C -0.108 4.108 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.253 0.747 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.113 0.887 50 H 0.094 0.906 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.290 17.055 -5.540 18.232 hybrid contribution -0.370 0.005 -0.421 0.561 sum 2.919 17.060 -5.961 18.306 Atomic orbital electron populations 1.22457 0.86946 1.03170 1.00236 1.61802 1.07806 1.13326 1.43026 1.22082 0.95658 0.89027 1.00258 1.21637 0.94375 0.99868 0.99882 1.21670 1.00019 0.94877 0.98156 1.20546 0.92901 0.95226 0.96780 1.21963 1.01142 1.00565 0.96732 1.22288 1.00620 1.01903 0.96393 1.21927 0.94862 0.93604 0.92120 0.93066 1.21336 0.99897 0.91852 0.86992 1.46354 1.66114 1.12820 1.12956 1.18888 0.76586 0.80863 0.88900 1.90686 1.44988 1.62143 1.45317 1.19510 1.06149 0.95953 0.91597 1.20401 1.10737 0.97972 0.93876 1.20436 1.00688 0.95284 0.95574 1.21134 1.07283 0.95003 0.99431 1.17603 0.88975 0.92971 0.90926 1.19535 1.40580 0.93150 0.95917 0.90318 1.25933 0.93251 1.00984 0.94490 1.69765 1.31987 1.36500 1.03366 0.86300 0.80569 0.80939 0.78498 1.18861 1.20296 1.19067 1.21710 0.98919 0.91502 0.98714 0.95863 0.91300 0.90366 0.95185 0.90732 0.91783 0.90569 0.92522 0.91650 0.92311 0.91683 0.92976 0.91194 0.90475 0.93335 0.92404 0.90719 0.74660 0.89129 0.88979 0.88709 0.90566 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.09 60.06 0.55 0.75 16 2 N -0.53 -5.69 3.14 -234.93 -0.74 -6.43 16 3 C 0.06 0.51 5.46 -3.83 -0.02 0.49 16 4 C -0.12 -1.00 5.75 -26.65 -0.15 -1.15 16 5 C -0.11 -0.96 4.78 -26.61 -0.13 -1.09 16 6 C -0.05 -0.57 0.54 -154.42 -0.08 -0.65 16 7 C -0.15 -1.53 8.15 37.16 0.30 -1.22 16 8 C -0.15 -1.89 6.26 37.16 0.23 -1.66 16 9 C 0.08 0.93 1.56 -67.72 -0.11 0.82 16 10 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 11 C 0.12 1.76 4.26 -4.05 -0.02 1.74 16 12 N -0.72 -12.09 3.06 -61.24 -0.19 -12.28 16 13 C 0.56 12.26 7.77 -12.31 -0.10 12.16 16 14 O -0.55 -13.96 16.32 5.32 0.09 -13.87 16 15 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 16 C -0.21 -4.46 9.55 -38.92 -0.37 -4.83 16 17 C -0.10 -2.18 10.01 -39.72 -0.40 -2.58 16 18 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 19 C 0.10 2.61 5.56 -106.87 -0.59 2.01 16 20 C -0.46 -12.30 9.06 -37.73 -0.34 -12.64 16 21 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 22 C 0.07 1.83 5.24 -17.34 -0.09 1.74 16 23 N -0.79 -21.26 10.81 55.55 0.60 -20.66 16 24 Si 0.91 19.10 29.58 -169.99 -5.03 14.08 16 25 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 28 C -0.09 -2.38 8.21 -38.44 -0.32 -2.69 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.08 0.97 6.14 -51.93 -0.32 0.65 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.70 6.78 -51.93 -0.35 0.35 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.79 6.29 -51.93 -0.33 0.47 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.86 5.32 -51.93 -0.28 0.59 16 42 H 0.08 1.15 5.85 -51.93 -0.30 0.85 16 43 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 44 H 0.06 0.84 6.78 -51.93 -0.35 0.49 16 45 H 0.07 1.12 6.06 -51.93 -0.31 0.81 16 46 H 0.41 6.41 3.14 -40.82 -0.13 6.28 16 47 H 0.09 1.65 6.38 -52.49 -0.33 1.31 16 48 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 49 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 50 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 51 H 0.14 3.97 5.74 -52.49 -0.30 3.67 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -29.09 381.37 -10.20 -39.29 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -8.05 Total: 11.99 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.63 Total: -17.86 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.32 Total: -39.37 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.09 -10.20 -39.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344665571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.194 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds