Wall clock time and date at job start Tue Mar 31 2020 16:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46845 * 111.00222 * 2 1 4 4 C 1.53043 * 109.52467 * 174.15798 * 3 2 1 5 5 C 1.53118 * 109.27774 * 59.18080 * 4 3 2 6 6 C 1.53119 * 109.16152 * 302.34550 * 5 4 3 7 7 C 1.53001 * 109.50534 * 177.59544 * 6 5 4 8 8 C 1.52999 * 109.50145 * 297.67459 * 6 5 4 9 9 C 1.46852 * 111.00078 * 235.78718 * 2 1 3 10 10 H 1.08999 * 109.45811 * 65.82752 * 9 2 1 11 11 C 1.52989 * 109.46276 * 305.85694 * 9 2 1 12 12 N 1.46500 * 109.47370 * 307.89300 * 11 9 2 13 13 C 1.34777 * 120.00177 * 185.75911 * 12 11 9 14 14 O 1.21552 * 119.99782 * 0.02562 * 13 12 11 15 15 C 1.47884 * 120.00151 * 180.02562 * 13 12 11 16 16 C 1.39917 * 120.02267 * 0.02562 * 15 13 12 17 17 C 1.38336 * 120.35455 * 180.02562 * 16 15 13 18 18 C 1.37748 * 120.41426 * 359.97438 * 17 16 15 19 19 C 1.40750 * 120.04126 * 359.97438 * 18 17 16 20 20 C 1.41437 * 120.18147 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99394 * 27.17222 * 20 19 18 22 22 C 1.39929 * 120.00328 * 207.18039 * 20 19 18 23 23 N 1.30836 * 119.99831 * 11.91869 * 22 20 19 24 24 Si 1.86793 * 120.00232 * 191.92329 * 22 20 19 25 25 H 1.48503 * 109.47222 * 59.99804 * 24 22 20 26 26 H 1.48498 * 109.47648 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47211 * 299.99539 * 24 22 20 28 28 C 1.38999 * 120.02547 * 179.72989 * 15 13 12 29 29 H 1.09006 * 109.46903 * 62.69888 * 1 2 3 30 30 H 1.08996 * 109.47373 * 302.69569 * 1 2 3 31 31 H 1.08995 * 109.47297 * 182.69337 * 1 2 3 32 32 H 1.09003 * 109.46527 * 294.17001 * 3 2 1 33 33 H 1.09002 * 109.46655 * 54.14565 * 3 2 1 34 34 H 1.08998 * 109.50183 * 179.11481 * 4 3 2 35 35 H 1.08998 * 109.50317 * 299.24108 * 4 3 2 36 36 H 1.09001 * 109.52826 * 62.24925 * 5 4 3 37 37 H 1.09003 * 109.52683 * 182.44196 * 5 4 3 38 38 H 1.08992 * 109.47222 * 60.00258 * 7 6 5 39 39 H 1.09004 * 109.46913 * 180.02562 * 7 6 5 40 40 H 1.08999 * 109.47115 * 299.99898 * 7 6 5 41 41 H 1.08998 * 109.47018 * 68.21043 * 8 6 5 42 42 H 1.09007 * 109.47340 * 188.20357 * 8 6 5 43 43 H 1.09000 * 109.47294 * 308.20573 * 8 6 5 44 44 H 1.09003 * 109.47177 * 67.89590 * 11 9 2 45 45 H 1.08999 * 109.47339 * 187.89520 * 11 9 2 46 46 H 0.96999 * 119.99747 * 5.76206 * 12 11 9 47 47 H 1.07999 * 119.82380 * 0.02562 * 16 15 13 48 48 H 1.08004 * 119.79249 * 179.97438 * 17 16 15 49 49 H 1.07999 * 119.97752 * 180.02562 * 18 17 16 50 50 H 0.97003 * 119.99424 * 180.02562 * 23 22 20 51 51 H 1.07994 * 120.20071 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 3.5182 -0.8715 -1.0208 7 6 4.0681 -1.6559 -2.2138 8 6 3.8884 -1.5907 0.2779 9 6 1.9952 -0.7709 -1.1337 10 1 1.7325 -0.2709 -2.0660 11 6 1.3891 -2.1755 -1.1203 12 7 1.5791 -2.7768 0.2020 13 6 1.2277 -4.0604 0.4154 14 8 0.7536 -4.7191 -0.4894 15 6 1.4190 -4.6672 1.7504 16 6 1.9642 -3.9091 2.7923 17 6 2.1467 -4.4700 4.0437 18 6 1.7935 -5.7805 4.2787 19 6 1.2425 -6.5584 3.2430 20 6 0.8783 -7.9041 3.4812 21 1 0.5995 -8.2201 4.4756 22 6 0.8794 -8.8261 2.4286 23 7 1.4334 -8.5131 1.2854 24 14 0.0897 -10.5036 2.6554 25 1 -1.3490 -10.3335 2.9818 26 1 0.2228 -11.2872 1.4011 27 1 0.7669 -11.2238 3.7636 28 6 1.0516 -5.9892 1.9725 29 1 -0.3633 0.4714 -0.9133 30 1 -0.3634 0.5551 0.8648 31 1 -0.3633 -1.0265 0.0483 32 1 1.7326 1.8608 -0.9376 33 1 1.5635 1.9258 0.8330 34 1 3.9099 2.3511 0.1310 35 1 3.7813 0.8567 1.0907 36 1 3.8888 1.0353 -1.9560 37 1 5.1998 0.4713 -0.8904 38 1 5.1530 -1.7244 -2.1346 39 1 3.6398 -2.6583 -2.2181 40 1 3.8028 -1.1439 -3.1387 41 1 3.3754 -1.1167 1.1147 42 1 3.5876 -2.6364 0.2127 43 1 4.9659 -1.5315 0.4316 44 1 0.3236 -2.1135 -1.3416 45 1 1.8814 -2.7909 -1.8734 46 1 1.9578 -2.2512 0.9239 47 1 2.2442 -2.8806 2.6188 48 1 2.5687 -3.8767 4.8414 49 1 1.9386 -6.2112 5.2584 50 1 1.4338 -9.1521 0.5556 51 1 0.6256 -6.5764 1.1726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344665571.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:07 Heat of formation + Delta-G solvation = -27.203305 kcal Electronic energy + Delta-G solvation = -29730.397137 eV Core-core repulsion = 26014.478836 eV Total energy + Delta-G solvation = -3715.918301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.74380 -40.31552 -38.72404 -36.05709 -35.81705 -35.49498 -33.10273 -31.80186 -31.23528 -29.32292 -28.22088 -27.44705 -27.19598 -26.34808 -24.06132 -22.80318 -22.32065 -22.17879 -21.08350 -19.62472 -19.27089 -17.86502 -17.25110 -17.09683 -16.73033 -16.51619 -16.23944 -15.82777 -15.50566 -15.33562 -15.07747 -14.99197 -14.83502 -14.33435 -14.24723 -14.21151 -13.72990 -13.54372 -13.35160 -13.33751 -13.08368 -12.90641 -12.88210 -12.78847 -12.74213 -12.50924 -12.33151 -12.18725 -12.13544 -11.88638 -11.85105 -11.50113 -11.36452 -11.10397 -11.08309 -11.00309 -10.71139 -9.89000 -9.39765 -9.33092 -9.26867 -8.59276 -6.38051 0.42125 1.03977 1.37002 1.49218 1.50631 2.15082 2.21782 2.33938 2.83411 2.94681 3.56060 3.65988 3.72752 3.90596 4.12773 4.13465 4.19494 4.28393 4.38710 4.43294 4.47660 4.53473 4.58456 4.60112 4.61534 4.69165 4.76882 4.81556 4.88176 4.93396 4.95703 5.01925 5.07397 5.10871 5.11406 5.16798 5.19114 5.21896 5.34302 5.35814 5.38032 5.46195 5.52946 5.56174 5.63016 5.89815 5.95133 6.08840 6.09397 6.17213 6.31359 6.57067 6.78280 6.90926 6.97557 7.40790 8.35792 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.003070 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.609923 B = 9118.773771 C = 9457.148645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.058 3.942 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.052 4.052 7 C -0.145 4.145 8 C -0.152 4.152 9 C 0.093 3.907 10 H 0.066 0.934 11 C 0.121 3.879 12 N -0.694 5.694 13 C 0.553 3.447 14 O -0.596 6.596 15 C -0.139 4.139 16 C -0.190 4.190 17 C -0.097 4.097 18 C -0.213 4.213 19 C 0.067 3.933 20 C -0.499 4.499 21 H 0.083 0.917 22 C 0.026 3.974 23 N -0.832 5.832 24 Si 0.985 3.015 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.253 1.253 28 C -0.126 4.126 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.420 0.580 47 H 0.128 0.872 48 H 0.138 0.862 49 H 0.109 0.891 50 H 0.284 0.716 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 20.926 -4.207 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.270 5.270 3 C -0.070 4.070 4 C -0.155 4.155 5 C -0.142 4.142 6 C -0.053 4.053 7 C -0.203 4.203 8 C -0.209 4.209 9 C -0.016 4.016 10 H 0.083 0.917 11 C -0.003 4.003 12 N -0.351 5.351 13 C 0.342 3.658 14 O -0.478 6.478 15 C -0.142 4.142 16 C -0.210 4.210 17 C -0.115 4.115 18 C -0.233 4.233 19 C 0.065 3.935 20 C -0.529 4.529 21 H 0.101 0.899 22 C -0.188 4.188 23 N -0.459 5.459 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.198 1.198 27 H -0.177 1.177 28 C -0.147 4.147 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.263 0.737 47 H 0.146 0.854 48 H 0.156 0.844 49 H 0.127 0.873 50 H 0.095 0.905 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.342 20.212 -4.650 21.190 hybrid contribution -0.623 -0.729 -0.676 1.173 sum 3.719 19.483 -5.326 20.537 Atomic orbital electron populations 1.22409 0.87030 1.01833 1.01354 1.61806 1.07847 1.14744 1.42597 1.22158 0.96000 0.87703 1.01103 1.21638 0.93911 1.00819 0.99129 1.21632 1.00297 0.93247 0.99004 1.20544 0.92428 0.96525 0.95773 1.21948 1.01421 0.99337 0.97600 1.22219 1.01248 0.99955 0.97475 1.21826 0.95097 0.91436 0.93205 0.91668 1.21511 0.99958 0.93742 0.85077 1.46138 1.63831 1.10850 1.14303 1.18791 0.76728 0.82280 0.87957 1.90658 1.47286 1.63572 1.46316 1.19805 1.05702 0.95375 0.93322 1.20805 1.08009 0.99200 0.92966 1.20907 0.99285 0.94615 0.96723 1.21436 1.06506 0.96026 0.99291 1.17946 0.90095 0.93809 0.91693 1.19840 1.42476 0.93921 0.96636 0.89870 1.26851 0.93175 1.04929 0.93803 1.69891 1.33715 1.37918 1.04329 0.85202 0.79478 0.75938 0.78788 1.18488 1.19782 1.17704 1.21500 1.01746 0.92958 0.98450 0.94811 0.90149 0.92899 0.94394 0.89765 0.89819 0.91353 0.91470 0.90954 0.91633 0.94240 0.91459 0.91020 0.93683 0.92410 0.92815 0.91764 0.73713 0.85385 0.84409 0.87265 0.90538 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.09 127.69 1.16 1.57 16 2 N -0.54 -10.17 3.14 -897.18 -2.81 -12.98 16 3 C 0.06 0.80 5.46 86.33 0.47 1.27 16 4 C -0.12 -1.49 5.75 30.65 0.18 -1.31 16 5 C -0.10 -1.45 4.78 30.67 0.15 -1.30 16 6 C -0.05 -0.98 0.54 -52.13 -0.03 -1.01 16 7 C -0.15 -2.84 8.15 71.98 0.59 -2.26 16 8 C -0.15 -3.42 6.26 71.98 0.45 -2.97 16 9 C 0.09 1.89 1.56 44.94 0.07 1.96 16 10 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 11 C 0.12 3.45 4.26 86.38 0.37 3.82 16 12 N -0.69 -23.27 3.06 -465.95 -1.43 -24.70 16 13 C 0.55 25.26 7.77 86.80 0.67 25.93 16 14 O -0.60 -32.05 16.32 -3.88 -0.06 -32.11 16 15 C -0.14 -6.79 5.87 -20.13 -0.12 -6.91 16 16 C -0.19 -7.77 9.55 22.70 0.22 -7.55 16 17 C -0.10 -3.95 10.01 22.18 0.22 -3.73 16 18 C -0.21 -10.11 9.78 22.77 0.22 -9.89 16 19 C 0.07 3.70 5.56 -21.32 -0.12 3.58 16 20 C -0.50 -27.70 9.06 23.47 0.21 -27.49 16 21 H 0.08 4.33 7.87 -2.91 -0.02 4.31 16 22 C 0.03 1.39 5.24 85.25 0.45 1.84 16 23 N -0.83 -47.59 10.81 21.82 0.24 -47.36 16 24 Si 0.99 40.54 29.58 68.60 2.03 42.57 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 28 C -0.13 -7.18 8.21 23.01 0.19 -6.99 16 29 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 31 H 0.05 1.27 6.14 -2.39 -0.01 1.26 16 32 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 1.05 8.10 -2.39 -0.02 1.03 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 1.00 6.78 -2.39 -0.02 0.99 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.04 0.97 6.29 -2.38 -0.02 0.95 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.57 5.32 -2.39 -0.01 1.56 16 42 H 0.04 1.31 5.85 -2.38 -0.01 1.29 16 43 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 44 H 0.05 1.60 6.78 -2.39 -0.02 1.58 16 45 H 0.06 2.00 6.06 -2.39 -0.01 1.99 16 46 H 0.42 12.53 3.14 -92.71 -0.29 12.24 16 47 H 0.13 4.22 6.38 -2.91 -0.02 4.20 16 48 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 49 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 50 H 0.28 15.07 8.30 -92.71 -0.77 14.30 16 51 H 0.10 6.37 5.74 -2.91 -0.02 6.35 16 Total: -1.00 -68.36 381.37 3.95 -64.41 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: 0.64 Total: 41.59 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 5.35 Total: -31.43 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -4.00 Total: -85.04 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.06 Total: -32.11 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -68.36 3.95 -64.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344665571.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.211 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds