Wall clock time and date at job start Tue Mar 31 2020 15:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 110.01752 * 2 1 4 4 C 1.54257 * 110.03215 * 121.39515 * 2 1 3 5 5 C 1.54888 * 104.20050 * 95.67469 * 4 2 1 6 6 C 1.54889 * 102.74763 * 37.93788 * 5 4 2 7 7 H 1.08998 * 110.48248 * 80.87434 * 6 5 4 8 8 N 1.46497 * 110.48713 * 203.38434 * 6 5 4 9 9 C 1.34783 * 119.99920 * 271.75676 * 8 6 5 10 10 O 1.21589 * 119.99924 * 0.02562 * 9 8 6 11 11 N 1.34769 * 120.00196 * 179.97438 * 9 8 6 12 12 C 1.46503 * 120.00394 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46813 * 325.00531 * 12 11 9 14 14 C 1.52998 * 109.47286 * 204.99978 * 12 11 9 15 15 C 1.50699 * 109.47053 * 65.00275 * 14 12 11 16 16 H 1.08004 * 119.99695 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00251 * 179.97438 * 15 14 12 18 18 N 1.31515 * 119.99863 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00100 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47091 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46827 * 120.00090 * 19 17 15 22 22 H 1.48503 * 109.46910 * 239.99874 * 19 17 15 23 23 C 1.50702 * 109.46763 * 84.99927 * 12 11 9 24 24 C 1.38234 * 119.99895 * 39.73148 * 23 12 11 25 25 C 1.38240 * 120.00061 * 180.34228 * 24 23 12 26 26 C 1.38234 * 119.99667 * 359.88520 * 25 24 23 27 27 C 1.38234 * 120.00244 * 0.09088 * 26 25 24 28 28 C 1.38230 * 119.99880 * 359.97438 * 27 26 25 29 29 C 1.54090 * 110.11140 * 238.63732 * 2 1 3 30 30 H 1.09002 * 109.46856 * 300.06417 * 1 2 3 31 31 H 1.09004 * 109.47116 * 60.05808 * 1 2 3 32 32 H 1.08995 * 109.46941 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47358 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47208 * 299.93989 * 3 2 1 35 35 H 1.09000 * 109.47029 * 59.93824 * 3 2 1 36 36 H 1.09004 * 110.49192 * 336.99220 * 4 2 1 37 37 H 1.09006 * 110.60110 * 214.40690 * 4 2 1 38 38 H 1.09001 * 110.75276 * 279.62664 * 5 4 2 39 39 H 1.09001 * 110.75910 * 156.25913 * 5 4 2 40 40 H 0.97002 * 120.00158 * 91.75840 * 8 6 5 41 41 H 0.97002 * 119.99882 * 0.02562 * 11 9 8 42 42 H 1.08998 * 109.46578 * 185.00091 * 14 12 11 43 43 H 1.08991 * 109.47306 * 305.00298 * 14 12 11 44 44 H 0.96991 * 120.00210 * 179.97438 * 18 17 15 45 45 H 1.08001 * 120.00279 * 0.27436 * 24 23 12 46 46 H 1.07997 * 119.99835 * 179.97438 * 25 24 23 47 47 H 1.07999 * 119.99733 * 180.10835 * 26 25 24 48 48 H 1.08001 * 119.99769 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.00376 * 180.02562 * 28 27 26 50 50 H 1.08991 * 110.15732 * 121.53827 * 29 2 1 51 51 H 1.09005 * 110.00505 * 0.03542 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0585 -0.7550 1.2371 5 6 2.3281 -2.1899 0.7200 6 6 2.8874 -1.9410 -0.7028 7 1 3.9445 -1.6793 -0.6567 8 7 2.6893 -3.1228 -1.5456 9 6 3.6207 -4.0967 -1.5701 10 8 4.6250 -3.9947 -0.8924 11 7 3.4382 -5.1842 -2.3450 12 6 4.4508 -6.2426 -2.3722 13 1 5.4420 -5.7997 -2.2750 14 6 4.3591 -7.0023 -3.6971 15 6 4.7181 -6.0781 -4.8319 16 1 4.9846 -5.0514 -4.6285 17 6 4.7064 -6.5431 -6.1298 18 7 4.3825 -7.7934 -6.3774 19 14 5.1508 -5.3972 -7.5366 20 1 5.4751 -4.0526 -6.9962 21 1 6.3296 -5.9366 -8.2609 22 1 4.0014 -5.2917 -8.4710 23 6 4.2121 -7.1954 -1.2292 24 6 2.9220 -7.5557 -0.8876 25 6 2.7027 -8.4241 0.1653 26 6 3.7737 -8.9341 0.8751 27 6 5.0638 -8.5742 0.5332 28 6 5.2830 -7.7048 -0.5188 29 6 2.0599 -0.7531 -1.2355 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5129 -0.8905 32 1 -0.3633 -1.0276 0.0005 33 1 3.1437 1.4272 0.0005 34 1 1.6963 1.9545 -0.8905 35 1 1.6945 1.9551 0.8894 36 1 1.3062 -0.7688 2.0258 37 1 2.9808 -0.3003 1.5989 38 1 1.4031 -2.7649 0.6763 39 1 3.0676 -2.6926 1.3434 40 1 1.8879 -3.2043 -2.0860 41 1 2.6368 -5.2657 -2.8854 42 1 5.0510 -7.8444 -3.6815 43 1 3.3424 -7.3698 -3.8356 44 1 4.3739 -8.1205 -7.2905 45 1 2.0853 -7.1578 -1.4426 46 1 1.6948 -8.7053 0.4325 47 1 3.6025 -9.6140 1.6966 48 1 5.9006 -8.9731 1.0875 49 1 6.2910 -7.4239 -0.7863 50 1 2.6916 -0.0962 -1.8334 51 1 1.2263 -1.1181 -1.8356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351834462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:50 Heat of formation + Delta-G solvation = -35.471628 kcal Electronic energy + Delta-G solvation = -28631.668346 eV Core-core repulsion = 24915.391504 eV Total energy + Delta-G solvation = -3716.276842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.03876 -39.12765 -38.22660 -35.27000 -34.07862 -32.70845 -31.50027 -30.53437 -30.27397 -28.82960 -28.14510 -27.52370 -24.94286 -24.12196 -22.24965 -21.92900 -21.30664 -20.30894 -19.74142 -18.95653 -17.88991 -16.80867 -16.20944 -16.05902 -15.28363 -15.07575 -14.82852 -14.53230 -14.43522 -14.16460 -13.96627 -13.73935 -13.49521 -13.31681 -13.06130 -12.95147 -12.72133 -12.48549 -12.25995 -12.08281 -11.91579 -11.71950 -11.47923 -11.34553 -11.10350 -11.01704 -10.88608 -10.72872 -10.70807 -10.62680 -10.57063 -10.53757 -10.40767 -9.74422 -9.59846 -9.24997 -8.79290 -8.49379 -8.43729 -8.23086 -8.11782 -6.07459 -4.10316 1.83549 1.85726 3.20643 3.26746 3.35370 3.40100 3.76487 4.25733 4.39631 4.41155 4.43521 4.57864 4.85601 5.06778 5.18888 5.23806 5.29352 5.30679 5.31798 5.32689 5.35319 5.42539 5.44428 5.47371 5.58641 5.60633 5.72477 5.76866 5.78915 5.86242 5.96349 5.99468 6.02047 6.04322 6.17061 6.22526 6.24422 6.28417 6.41436 6.48299 6.63803 6.87842 6.89669 6.90656 7.02651 7.16996 7.40338 7.46154 7.55411 7.72627 7.90159 8.28727 8.60318 8.96138 9.18829 9.54552 11.03187 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008167 B = 0.003896 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.405612 B = 7184.358782 C = 9912.462429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.134 4.134 6 C 0.163 3.837 7 H 0.090 0.910 8 N -0.746 5.746 9 C 0.704 3.296 10 O -0.598 6.598 11 N -0.717 5.717 12 C 0.202 3.798 13 H 0.086 0.914 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.069 4.069 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.123 4.123 28 C -0.108 4.108 29 C -0.123 4.123 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.392 0.608 41 H 0.396 0.604 42 H 0.034 0.966 43 H 0.024 0.976 44 H 0.261 0.739 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.120 0.880 50 H 0.072 0.928 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 10.557 14.158 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.152 4.152 5 C -0.173 4.173 6 C 0.057 3.943 7 H 0.109 0.891 8 N -0.402 5.402 9 C 0.404 3.596 10 O -0.477 6.477 11 N -0.369 5.369 12 C 0.097 3.903 13 H 0.104 0.896 14 C -0.014 4.014 15 C -0.555 4.555 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.070 4.070 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.127 4.127 29 C -0.161 4.161 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.226 0.774 41 H 0.229 0.771 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.138 0.862 50 H 0.090 0.910 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.403 10.516 14.605 19.460 hybrid contribution -0.573 0.374 -1.431 1.586 sum -7.976 10.889 13.174 18.861 Atomic orbital electron populations 1.21908 0.94301 1.01788 1.01496 1.21153 0.95514 0.95193 0.94946 1.21929 1.01043 0.95245 1.01516 1.22447 1.00865 0.95271 0.96629 1.22894 1.01161 0.96449 0.96786 1.21548 1.00333 0.83495 0.88880 0.89145 1.45189 1.23722 1.21103 1.50151 1.16020 0.83051 0.80032 0.80529 1.90863 1.29369 1.80049 1.47432 1.45135 1.25101 1.19691 1.47016 1.20094 0.91309 0.84949 0.93917 0.89634 1.19397 0.98320 0.95460 0.88221 1.21185 1.46256 0.97167 0.90900 0.92322 1.24988 0.95283 0.95020 0.98911 1.69968 1.48516 1.14514 1.20172 0.86551 0.78088 0.81142 0.82326 1.19767 1.20998 1.21088 1.20609 0.93153 0.96927 0.96359 1.20882 0.96702 0.97785 0.97080 1.21028 0.98406 0.98355 0.96635 1.20975 0.93009 1.01071 1.00374 1.21031 0.96686 0.98606 0.97822 1.21018 0.98943 0.97411 0.95287 1.22600 0.99677 0.96564 0.97256 0.92785 0.92738 0.92499 0.92420 0.92734 0.92768 0.91604 0.91365 0.91431 0.91122 0.77403 0.77060 0.94737 0.95801 0.92972 0.86706 0.86874 0.86939 0.86678 0.86215 0.90974 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.15 37.16 0.30 -0.73 16 2 C -0.07 -0.57 0.94 -153.28 -0.14 -0.71 16 3 C -0.14 -1.06 8.16 37.16 0.30 -0.76 16 4 C -0.11 -1.04 5.90 -25.08 -0.15 -1.18 16 5 C -0.13 -1.53 6.58 -24.74 -0.16 -1.69 16 6 C 0.16 2.04 3.18 -66.27 -0.21 1.83 16 7 H 0.09 1.34 7.61 -51.93 -0.40 0.94 16 8 N -0.75 -10.40 5.17 -57.06 -0.30 -10.70 16 9 C 0.70 12.90 8.52 -86.92 -0.74 12.16 16 10 O -0.60 -13.17 15.68 5.29 0.08 -13.09 16 11 N -0.72 -13.18 4.03 -59.81 -0.24 -13.42 16 12 C 0.20 4.20 2.12 -69.08 -0.15 4.06 16 13 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 14 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 15 C -0.52 -13.76 8.84 -34.44 -0.30 -14.07 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 19 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 C -0.07 -1.31 4.91 -104.62 -0.51 -1.83 16 24 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 25 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.14 -2.00 10.05 -39.58 -0.40 -2.39 16 27 C -0.12 -1.92 10.05 -39.59 -0.40 -2.31 16 28 C -0.11 -1.94 9.67 -39.59 -0.38 -2.32 16 29 C -0.12 -1.19 5.85 -25.50 -0.15 -1.34 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.54 7.84 -51.93 -0.41 0.14 16 37 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.39 4.50 8.36 -40.82 -0.34 4.16 16 41 H 0.40 6.63 8.62 -40.82 -0.35 6.28 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.11 1.86 7.71 -52.49 -0.40 1.45 16 46 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 48 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 49 H 0.12 2.07 8.04 -52.49 -0.42 1.64 16 50 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 51 H 0.07 0.64 7.25 -51.93 -0.38 0.26 16 LS Contribution 411.32 15.07 6.20 6.20 Total: -1.00 -31.49 411.32 -11.55 -43.04 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -8.93 Total: 10.63 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -4.08 Total: -13.84 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.20 Total: -49.05 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.49 -11.55 -43.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351834462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.571 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds