Wall clock time and date at job start Tue Mar 31 2020 16:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99905 * 2 1 4 4 C 1.53243 * 109.34282 * 172.74354 * 3 2 1 5 5 N 1.47081 * 108.51709 * 53.82761 * 4 3 2 6 6 C 1.34778 * 120.87985 * 128.81647 * 5 4 3 7 7 O 1.21280 * 120.00146 * 184.60353 * 6 5 4 8 8 C 1.50704 * 120.00113 * 4.60471 * 6 5 4 9 9 C 1.52997 * 109.47069 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47210 * 304.99758 * 9 8 6 11 11 C 1.50696 * 109.47085 * 65.00347 * 9 8 6 12 12 H 1.07997 * 120.00453 * 31.76338 * 11 9 8 13 13 C 1.37885 * 119.99661 * 211.76518 * 11 9 8 14 14 N 1.31513 * 119.99896 * 5.92859 * 13 11 9 15 15 Si 1.86795 * 119.99883 * 185.93301 * 13 11 9 16 16 H 1.48502 * 109.47251 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.47225 * 119.99682 * 15 13 11 18 18 H 1.48493 * 109.47132 * 239.99730 * 15 13 11 19 19 C 1.50710 * 109.46931 * 184.99942 * 9 8 6 20 20 C 1.38234 * 119.99914 * 298.47841 * 19 9 8 21 21 C 1.38234 * 120.00043 * 179.78867 * 20 19 9 22 22 C 1.38240 * 119.99698 * 0.43811 * 21 20 19 23 23 C 1.38237 * 119.99769 * 359.81076 * 22 21 20 24 24 C 1.38230 * 119.99723 * 118.74791 * 19 9 8 25 25 C 1.47075 * 118.24110 * 308.81667 * 5 4 3 26 26 C 1.53007 * 109.62889 * 291.47797 * 25 5 4 27 27 C 1.53000 * 109.78983 * 170.99030 * 25 5 4 28 28 C 1.46901 * 111.00480 * 235.69454 * 2 1 3 29 29 H 1.09004 * 109.47139 * 184.30357 * 1 2 3 30 30 H 1.09004 * 109.47460 * 304.30144 * 1 2 3 31 31 H 1.08992 * 109.47405 * 64.30796 * 1 2 3 32 32 H 1.08995 * 109.49262 * 292.70458 * 3 2 1 33 33 H 1.09003 * 109.49438 * 52.75849 * 3 2 1 34 34 H 1.08996 * 109.62849 * 173.53556 * 4 3 2 35 35 H 1.09001 * 109.62660 * 293.92745 * 4 3 2 36 36 H 1.08998 * 109.46996 * 300.00044 * 8 6 5 37 37 H 1.09000 * 109.47079 * 59.99826 * 8 6 5 38 38 H 0.97005 * 119.99702 * 179.97438 * 14 13 11 39 39 H 1.08003 * 119.99802 * 359.97438 * 20 19 9 40 40 H 1.08001 * 120.00381 * 180.26818 * 21 20 19 41 41 H 1.08000 * 119.99462 * 179.83611 * 22 21 20 42 42 H 1.08002 * 119.99351 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.00519 * 359.97438 * 24 19 9 44 44 H 1.08996 * 109.47169 * 179.02606 * 26 25 5 45 45 H 1.09000 * 109.46925 * 59.02334 * 26 25 5 46 46 H 1.09000 * 109.46465 * 299.02758 * 26 25 5 47 47 H 1.09003 * 109.46547 * 185.88925 * 27 25 5 48 48 H 1.08991 * 109.47052 * 305.88818 * 27 25 5 49 49 H 1.09001 * 109.46824 * 65.89516 * 27 25 5 50 50 H 1.08997 * 109.48959 * 67.29277 * 28 2 1 51 51 H 1.09003 * 109.51260 * 307.23105 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3313 0.1826 5 7 4.0869 0.4460 -0.8441 6 6 5.1055 0.8583 -1.6244 7 8 5.5087 0.1479 -2.5209 8 6 5.7436 2.2021 -1.3830 9 6 6.8662 2.4234 -2.3987 10 1 7.5702 1.5928 -2.3489 11 6 6.2807 2.5034 -3.7850 12 1 5.2918 2.9122 -3.9308 13 6 7.0077 2.0547 -4.8673 14 7 8.1611 1.4512 -4.6800 15 14 6.3545 2.3043 -6.5994 16 1 5.0466 3.0050 -6.5390 17 1 7.3182 3.1223 -7.3789 18 1 6.1797 0.9846 -7.2574 19 6 7.5841 3.7101 -2.0816 20 6 6.8986 4.9101 -2.1139 21 6 7.5560 6.0897 -1.8188 22 6 8.9010 6.0703 -1.5001 23 6 9.5876 4.8708 -1.4728 24 6 8.9292 3.6907 -1.7638 25 6 3.5164 -0.9010 -0.9967 26 6 3.8530 -1.7442 0.2349 27 6 4.0902 -1.5677 -2.2485 28 6 1.9955 -0.7729 -1.1328 29 1 -0.3633 -1.0248 0.0771 30 1 -0.3634 0.5791 0.8489 31 1 -0.3634 0.4455 -0.9260 32 1 1.7555 1.8531 -0.9479 33 1 1.5452 1.9338 0.8180 34 1 3.9254 2.3351 0.0689 35 1 3.7560 0.9483 1.1746 36 1 4.9937 2.9854 -1.4932 37 1 6.1555 2.2327 -0.3743 38 1 8.6724 1.1352 -5.4415 39 1 5.8487 4.9256 -2.3669 40 1 7.0195 7.0268 -1.8399 41 1 9.4152 6.9923 -1.2721 42 1 10.6385 4.8558 -1.2242 43 1 9.4656 2.7537 -1.7423 44 1 3.4144 -2.7362 0.1269 45 1 3.4491 -1.2634 1.1258 46 1 4.9352 -1.8336 0.3292 47 1 3.5882 -2.5209 -2.4149 48 1 3.9331 -0.9190 -3.1101 49 1 5.1581 -1.7385 -2.1121 50 1 1.7556 -0.2614 -2.0649 51 1 1.5457 -1.7658 -1.1366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356599559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:18 Heat of formation + Delta-G solvation = 12.084619 kcal Electronic energy + Delta-G solvation = -29942.493003 eV Core-core repulsion = 26228.278354 eV Total energy + Delta-G solvation = -3714.214649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.28657 -38.46509 -37.57047 -34.79785 -33.95880 -33.27561 -31.35265 -30.01304 -29.15238 -28.39945 -27.04557 -26.81596 -25.49405 -24.01953 -22.91751 -21.69738 -21.59472 -20.67704 -19.28353 -17.79572 -16.61610 -16.27482 -15.85343 -15.66981 -15.13567 -15.03192 -14.79747 -14.59501 -14.47096 -14.06094 -13.85956 -13.21250 -13.14401 -13.06943 -12.71708 -12.51212 -12.24781 -12.18442 -12.04911 -11.96462 -11.78507 -11.65875 -11.54941 -11.40973 -11.39217 -11.12099 -10.89349 -10.80855 -10.62491 -10.57450 -10.52422 -10.25772 -10.03050 -9.37188 -9.03168 -8.55501 -8.37351 -8.15759 -8.05019 -7.97159 -7.61149 -5.91046 -3.89459 2.28184 2.34182 3.36695 3.40000 3.44108 3.45917 3.57722 3.86694 4.52489 4.74035 4.80453 4.90913 4.99611 5.19089 5.25345 5.35078 5.39568 5.42452 5.43991 5.59217 5.65772 5.66139 5.68528 5.72497 5.73888 5.77440 5.84605 5.91832 5.99722 6.07787 6.13567 6.19066 6.21917 6.29073 6.33900 6.40940 6.54604 6.59183 6.77454 6.84632 6.90204 6.91240 6.97081 7.04879 7.20722 7.30701 7.45701 7.55076 7.90421 7.94874 8.04956 8.12186 8.41099 9.09967 9.17277 9.70986 11.18970 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.004294 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.839244 B = 6519.150189 C = 7695.647945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.040 3.960 4 C 0.116 3.884 5 N -0.624 5.624 6 C 0.515 3.485 7 O -0.482 6.482 8 C -0.121 4.121 9 C 0.078 3.922 10 H 0.075 0.925 11 C -0.488 4.488 12 H 0.049 0.951 13 C 0.079 3.921 14 N -0.878 5.878 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.285 1.285 19 C -0.023 4.023 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.156 4.156 23 C -0.128 4.128 24 C -0.120 4.120 25 C 0.176 3.824 26 C -0.145 4.145 27 C -0.129 4.129 28 C 0.051 3.949 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.258 0.742 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.033 0.967 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.038 0.962 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 -0.356 12.054 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.264 5.264 3 C -0.089 4.089 4 C -0.008 4.008 5 N -0.363 5.363 6 C 0.304 3.696 7 O -0.353 6.353 8 C -0.161 4.161 9 C 0.059 3.941 10 H 0.093 0.907 11 C -0.526 4.526 12 H 0.067 0.933 13 C -0.125 4.125 14 N -0.516 5.516 15 Si 0.711 3.289 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.023 4.023 20 C -0.134 4.134 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.138 4.138 25 C 0.091 3.909 26 C -0.203 4.203 27 C -0.187 4.187 28 C -0.077 4.077 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.052 0.948 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.056 0.944 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.931 -1.061 11.841 15.491 hybrid contribution -0.722 0.731 -1.822 2.092 sum -10.653 -0.330 10.019 14.628 Atomic orbital electron populations 1.22348 0.87470 1.02081 1.00342 1.61930 1.07379 1.13591 1.43542 1.22523 0.95976 0.89419 1.01007 1.21659 0.91775 0.95204 0.92162 1.48440 1.36267 1.14066 1.37500 1.20857 0.78776 0.89110 0.80900 1.90806 1.61014 1.54574 1.28916 1.21820 1.00166 0.93631 1.00467 1.17859 0.92369 0.91232 0.92637 0.90723 1.20671 1.00968 1.40739 0.90179 0.93317 1.24788 0.94974 0.94103 0.98586 1.69910 1.13637 1.37793 1.30212 0.86702 0.78850 0.77688 0.85679 1.20041 1.21234 1.21161 1.20786 0.93717 0.97353 0.90473 1.20939 0.99922 0.92114 1.00441 1.20975 0.94773 0.97585 1.01656 1.20798 0.94876 0.97105 1.04617 1.20994 0.98822 0.93160 1.01631 1.21108 0.95044 0.97505 1.00140 1.20565 0.90763 0.83013 0.96562 1.22030 1.01248 0.98973 0.98080 1.22207 1.01921 0.98132 0.96423 1.22577 0.95400 0.98244 0.91517 0.91463 0.91438 0.95810 0.94312 0.89972 0.89256 0.91374 0.90927 0.91873 0.93256 0.86993 0.87689 0.87808 0.87634 0.86757 0.92448 0.91678 0.92819 0.94821 0.90903 0.90219 0.94362 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.58 60.06 0.58 0.81 16 2 N -0.54 -6.09 4.38 -242.61 -1.06 -7.15 16 3 C 0.04 0.44 5.62 -3.70 -0.02 0.42 16 4 C 0.12 1.44 6.08 -3.60 -0.02 1.41 16 5 N -0.62 -9.89 2.70 -157.69 -0.43 -10.32 16 6 C 0.51 10.26 7.35 -10.98 -0.08 10.18 16 7 O -0.48 -11.58 10.51 5.56 0.06 -11.52 16 8 C -0.12 -2.33 3.35 -27.88 -0.09 -2.42 16 9 C 0.08 1.84 1.73 -92.92 -0.16 1.68 16 10 H 0.07 2.04 6.87 -51.93 -0.36 1.68 16 11 C -0.49 -12.99 6.45 -34.44 -0.22 -13.21 16 12 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 13 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 14 N -0.88 -25.70 12.81 55.43 0.71 -24.99 16 15 Si 0.88 22.16 29.54 -169.99 -5.02 17.14 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 20 C -0.12 -2.31 8.86 -39.58 -0.35 -2.66 16 21 C -0.13 -2.34 10.05 -39.58 -0.40 -2.73 16 22 C -0.16 -2.69 10.05 -39.58 -0.40 -3.09 16 23 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 24 C -0.12 -2.52 9.67 -39.59 -0.38 -2.91 16 25 C 0.18 2.58 1.04 -131.38 -0.14 2.44 16 26 C -0.14 -1.86 8.50 37.16 0.32 -1.55 16 27 C -0.13 -2.19 6.91 37.16 0.26 -1.93 16 28 C 0.05 0.66 4.30 -3.70 -0.02 0.64 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 34 H 0.09 1.05 6.04 -51.93 -0.31 0.74 16 35 H 0.07 0.78 7.62 -51.93 -0.40 0.38 16 36 H 0.07 1.31 6.99 -51.93 -0.36 0.94 16 37 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 39 H 0.11 2.15 7.70 -52.48 -0.40 1.74 16 40 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 43 H 0.11 2.45 7.95 -52.49 -0.42 2.03 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.81 7.07 -51.93 -0.37 0.44 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 1.45 6.84 -51.93 -0.36 1.09 16 49 H 0.08 1.54 6.74 -51.93 -0.35 1.19 16 50 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -30.91 394.56 -10.70 -41.61 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.78 Total: 3.84 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.13 Total: -14.55 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.78 Total: -42.46 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.06 Total: -11.52 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.91 -10.70 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356599559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.695 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds