Wall clock time and date at job start Tue Mar 31 2020 16:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99905 * 2 1 4 4 C 1.53243 * 109.34282 * 172.74354 * 3 2 1 5 5 N 1.47081 * 108.51709 * 53.82761 * 4 3 2 6 6 C 1.34778 * 120.87985 * 128.81647 * 5 4 3 7 7 O 1.21280 * 120.00146 * 184.60353 * 6 5 4 8 8 C 1.50704 * 120.00113 * 4.60471 * 6 5 4 9 9 C 1.52997 * 109.47069 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47210 * 304.99758 * 9 8 6 11 11 C 1.50696 * 109.47085 * 65.00347 * 9 8 6 12 12 H 1.07997 * 120.00453 * 31.76338 * 11 9 8 13 13 C 1.37885 * 119.99661 * 211.76518 * 11 9 8 14 14 N 1.31513 * 119.99896 * 5.92859 * 13 11 9 15 15 Si 1.86795 * 119.99883 * 185.93301 * 13 11 9 16 16 H 1.48502 * 109.47251 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.47225 * 119.99682 * 15 13 11 18 18 H 1.48493 * 109.47132 * 239.99730 * 15 13 11 19 19 C 1.50710 * 109.46931 * 184.99942 * 9 8 6 20 20 C 1.38234 * 119.99914 * 298.47841 * 19 9 8 21 21 C 1.38234 * 120.00043 * 179.78867 * 20 19 9 22 22 C 1.38240 * 119.99698 * 0.43811 * 21 20 19 23 23 C 1.38237 * 119.99769 * 359.81076 * 22 21 20 24 24 C 1.38230 * 119.99723 * 118.74791 * 19 9 8 25 25 C 1.47075 * 118.24110 * 308.81667 * 5 4 3 26 26 C 1.53007 * 109.62889 * 291.47797 * 25 5 4 27 27 C 1.53000 * 109.78983 * 170.99030 * 25 5 4 28 28 C 1.46901 * 111.00480 * 235.69454 * 2 1 3 29 29 H 1.09004 * 109.47139 * 184.30357 * 1 2 3 30 30 H 1.09004 * 109.47460 * 304.30144 * 1 2 3 31 31 H 1.08992 * 109.47405 * 64.30796 * 1 2 3 32 32 H 1.08995 * 109.49262 * 292.70458 * 3 2 1 33 33 H 1.09003 * 109.49438 * 52.75849 * 3 2 1 34 34 H 1.08996 * 109.62849 * 173.53556 * 4 3 2 35 35 H 1.09001 * 109.62660 * 293.92745 * 4 3 2 36 36 H 1.08998 * 109.46996 * 300.00044 * 8 6 5 37 37 H 1.09000 * 109.47079 * 59.99826 * 8 6 5 38 38 H 0.97005 * 119.99702 * 179.97438 * 14 13 11 39 39 H 1.08003 * 119.99802 * 359.97438 * 20 19 9 40 40 H 1.08001 * 120.00381 * 180.26818 * 21 20 19 41 41 H 1.08000 * 119.99462 * 179.83611 * 22 21 20 42 42 H 1.08002 * 119.99351 * 179.97438 * 23 22 21 43 43 H 1.07994 * 120.00519 * 359.97438 * 24 19 9 44 44 H 1.08996 * 109.47169 * 179.02606 * 26 25 5 45 45 H 1.09000 * 109.46925 * 59.02334 * 26 25 5 46 46 H 1.09000 * 109.46465 * 299.02758 * 26 25 5 47 47 H 1.09003 * 109.46547 * 185.88925 * 27 25 5 48 48 H 1.08991 * 109.47052 * 305.88818 * 27 25 5 49 49 H 1.09001 * 109.46824 * 65.89516 * 27 25 5 50 50 H 1.08997 * 109.48959 * 67.29277 * 28 2 1 51 51 H 1.09003 * 109.51260 * 307.23105 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3313 0.1826 5 7 4.0869 0.4460 -0.8441 6 6 5.1055 0.8583 -1.6244 7 8 5.5087 0.1479 -2.5209 8 6 5.7436 2.2021 -1.3830 9 6 6.8662 2.4234 -2.3987 10 1 7.5702 1.5928 -2.3489 11 6 6.2807 2.5034 -3.7850 12 1 5.2918 2.9122 -3.9308 13 6 7.0077 2.0547 -4.8673 14 7 8.1611 1.4512 -4.6800 15 14 6.3545 2.3043 -6.5994 16 1 5.0466 3.0050 -6.5390 17 1 7.3182 3.1223 -7.3789 18 1 6.1797 0.9846 -7.2574 19 6 7.5841 3.7101 -2.0816 20 6 6.8986 4.9101 -2.1139 21 6 7.5560 6.0897 -1.8188 22 6 8.9010 6.0703 -1.5001 23 6 9.5876 4.8708 -1.4728 24 6 8.9292 3.6907 -1.7638 25 6 3.5164 -0.9010 -0.9967 26 6 3.8530 -1.7442 0.2349 27 6 4.0902 -1.5677 -2.2485 28 6 1.9955 -0.7729 -1.1328 29 1 -0.3633 -1.0248 0.0771 30 1 -0.3634 0.5791 0.8489 31 1 -0.3634 0.4455 -0.9260 32 1 1.7555 1.8531 -0.9479 33 1 1.5452 1.9338 0.8180 34 1 3.9254 2.3351 0.0689 35 1 3.7560 0.9483 1.1746 36 1 4.9937 2.9854 -1.4932 37 1 6.1555 2.2327 -0.3743 38 1 8.6724 1.1352 -5.4415 39 1 5.8487 4.9256 -2.3669 40 1 7.0195 7.0268 -1.8399 41 1 9.4152 6.9923 -1.2721 42 1 10.6385 4.8558 -1.2242 43 1 9.4656 2.7537 -1.7423 44 1 3.4144 -2.7362 0.1269 45 1 3.4491 -1.2634 1.1258 46 1 4.9352 -1.8336 0.3292 47 1 3.5882 -2.5209 -2.4149 48 1 3.9331 -0.9190 -3.1101 49 1 5.1581 -1.7385 -2.1121 50 1 1.7556 -0.2614 -2.0649 51 1 1.5457 -1.7658 -1.1366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356599559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:17 Heat of formation + Delta-G solvation = -5.362659 kcal Electronic energy + Delta-G solvation = -29943.249573 eV Core-core repulsion = 26228.278354 eV Total energy + Delta-G solvation = -3714.971219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58861 -39.96543 -38.89282 -36.13933 -35.50133 -34.63446 -33.24583 -31.50673 -30.46331 -29.69544 -28.11712 -27.96525 -27.40827 -24.98804 -24.63209 -23.16355 -22.69527 -22.03225 -20.88201 -19.13662 -18.48892 -17.79436 -17.19324 -16.91465 -16.47029 -16.39364 -16.10775 -15.82830 -15.72752 -15.61706 -15.35956 -14.79988 -14.47520 -14.23367 -14.07168 -13.94666 -13.68648 -13.56227 -13.34766 -13.29256 -13.16234 -13.00194 -12.88479 -12.74720 -12.70261 -12.52180 -12.41811 -12.39100 -12.07736 -12.02366 -11.82330 -11.72012 -11.68089 -11.22562 -10.94457 -10.48401 -9.76527 -9.59037 -9.54740 -9.20476 -9.15819 -8.03419 -6.05008 0.77241 0.83585 1.32917 1.35061 1.43029 2.03564 2.14667 2.44634 2.94634 3.17939 3.35515 3.67753 3.91596 3.96247 4.15500 4.22910 4.24980 4.31257 4.33062 4.36343 4.41566 4.52617 4.55389 4.60137 4.62602 4.68338 4.71524 4.74007 4.76382 4.80720 4.87150 4.92606 4.98799 5.01703 5.04642 5.06219 5.11838 5.23130 5.37332 5.39777 5.48698 5.52155 5.67432 5.78403 5.83445 5.87764 5.96144 6.00295 6.07340 6.18508 6.42162 6.46369 6.70817 7.02493 7.56141 7.66375 9.06243 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.004294 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.839244 B = 6519.150189 C = 7695.647945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.043 3.957 4 C 0.108 3.892 5 N -0.619 5.619 6 C 0.508 3.492 7 O -0.537 6.537 8 C -0.111 4.111 9 C 0.083 3.917 10 H 0.025 0.975 11 C -0.478 4.478 12 H 0.042 0.958 13 C 0.025 3.975 14 N -0.915 5.915 15 Si 0.930 3.070 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.292 1.292 19 C -0.047 4.047 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.147 4.147 23 C -0.128 4.128 24 C -0.145 4.145 25 C 0.170 3.830 26 C -0.134 4.134 27 C -0.118 4.118 28 C 0.060 3.940 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.022 0.978 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.252 0.748 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.035 0.965 47 H 0.059 0.941 48 H 0.034 0.966 49 H 0.046 0.954 50 H 0.016 0.984 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 1.899 14.410 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.264 5.264 3 C -0.086 4.086 4 C -0.014 4.014 5 N -0.356 5.356 6 C 0.297 3.703 7 O -0.412 6.412 8 C -0.151 4.151 9 C 0.063 3.937 10 H 0.044 0.956 11 C -0.516 4.516 12 H 0.060 0.940 13 C -0.174 4.174 14 N -0.555 5.555 15 Si 0.758 3.242 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.219 1.219 19 C -0.047 4.047 20 C -0.145 4.145 21 C -0.143 4.143 22 C -0.165 4.165 23 C -0.146 4.146 24 C -0.164 4.164 25 C 0.085 3.915 26 C -0.192 4.192 27 C -0.176 4.176 28 C -0.069 4.069 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.133 0.867 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.149 0.851 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.065 0.935 50 H 0.034 0.966 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.049 1.217 14.244 18.696 hybrid contribution -0.109 0.066 -2.438 2.441 sum -12.159 1.283 11.806 16.996 Atomic orbital electron populations 1.22430 0.85634 1.03218 1.00888 1.61969 1.08937 1.13356 1.42131 1.22542 0.94879 0.89693 1.01450 1.21968 0.92818 0.94916 0.91690 1.48436 1.34914 1.15099 1.37107 1.21015 0.79496 0.88987 0.80813 1.90807 1.62979 1.55958 1.31474 1.21664 0.99213 0.94004 1.00231 1.17615 0.92613 0.90851 0.92575 0.95650 1.20913 1.00194 1.38745 0.91731 0.94022 1.25441 0.95482 0.94762 1.01721 1.70058 1.15032 1.39941 1.30421 0.85935 0.78700 0.77210 0.82376 1.19100 1.20740 1.21919 1.20583 0.94168 0.97110 0.92869 1.21024 1.00228 0.92218 1.01022 1.21376 0.95203 0.98003 0.99693 1.21271 0.94794 0.97966 1.02460 1.21286 1.00148 0.92562 1.00606 1.21103 0.95070 0.98081 1.02097 1.20716 0.92105 0.82491 0.96189 1.21929 1.00307 0.99694 0.97250 1.21971 1.00335 0.98839 0.96432 1.22435 0.93719 0.99460 0.91304 0.90343 0.89538 0.96335 0.95930 0.86768 0.88617 0.89574 0.89278 0.89782 0.93877 0.86706 0.84041 0.83812 0.85097 0.89000 0.90491 0.90419 0.94540 0.92216 0.94690 0.93516 0.96591 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.58 127.69 1.22 1.60 16 2 N -0.54 -10.64 4.38 -921.49 -4.04 -14.68 16 3 C 0.04 0.84 5.62 86.39 0.49 1.33 16 4 C 0.11 2.48 6.08 86.35 0.53 3.01 16 5 N -0.62 -19.75 2.70 -771.19 -2.09 -21.84 16 6 C 0.51 21.25 7.35 87.66 0.64 21.89 16 7 O -0.54 -27.90 10.51 -3.03 -0.03 -27.94 16 8 C -0.11 -4.42 3.35 29.85 0.10 -4.32 16 9 C 0.08 4.11 1.73 -12.29 -0.02 4.09 16 10 H 0.03 1.50 6.87 -2.39 -0.02 1.48 16 11 C -0.48 -26.59 6.45 25.60 0.17 -26.43 16 12 H 0.04 2.32 7.82 -2.91 -0.02 2.29 16 13 C 0.02 1.44 5.45 84.66 0.46 1.91 16 14 N -0.91 -56.98 12.81 21.45 0.27 -56.71 16 15 Si 0.93 47.20 29.54 68.60 2.03 49.22 16 16 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 17 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 18 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 19 C -0.05 -2.09 4.77 -19.86 -0.09 -2.19 16 20 C -0.13 -4.91 8.86 22.27 0.20 -4.71 16 21 C -0.12 -4.00 10.05 22.27 0.22 -3.77 16 22 C -0.15 -4.53 10.05 22.27 0.22 -4.30 16 23 C -0.13 -4.50 10.05 22.27 0.22 -4.28 16 24 C -0.15 -6.29 9.67 22.27 0.22 -6.07 16 25 C 0.17 4.95 1.04 3.58 0.00 4.96 16 26 C -0.13 -3.26 8.50 71.98 0.61 -2.65 16 27 C -0.12 -4.23 6.91 71.98 0.50 -3.73 16 28 C 0.06 1.45 4.30 86.38 0.37 1.82 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 0.97 8.08 -2.39 -0.02 0.96 16 31 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.11 1.56 8.06 -2.39 -0.02 1.54 16 34 H 0.10 2.07 6.04 -2.39 -0.01 2.05 16 35 H 0.09 1.72 7.62 -2.39 -0.02 1.70 16 36 H 0.09 3.20 6.99 -2.39 -0.02 3.18 16 37 H 0.08 2.93 8.13 -2.39 -0.02 2.91 16 38 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 39 H 0.11 4.28 7.70 -2.91 -0.02 4.25 16 40 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 43 H 0.09 4.26 7.95 -2.91 -0.02 4.24 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 1.71 7.07 -2.39 -0.02 1.69 16 46 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.03 1.49 6.84 -2.39 -0.02 1.47 16 49 H 0.05 1.96 6.74 -2.39 -0.02 1.94 16 50 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.10 2.01 8.11 -2.39 -0.02 1.99 16 Total: -1.00 -73.45 394.56 3.09 -70.37 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.88 Total: 23.41 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 6.06 Total: -21.84 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -5.85 Total: -93.23 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.03 Total: -27.94 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -73.45 3.09 -70.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356599559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.006 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds