Wall clock time and date at job start Tue Mar 31 2020 16:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.45080 * 2 1 4 4 C 1.53042 * 109.46203 * 119.96525 * 2 1 3 5 5 C 1.53198 * 109.33894 * 58.66982 * 4 2 1 6 6 N 1.46930 * 108.77175 * 54.61995 * 5 4 2 7 7 C 1.34777 * 120.62890 * 126.37349 * 6 5 4 8 8 O 1.21580 * 120.00116 * 174.96604 * 7 6 5 9 9 N 1.34779 * 119.99866 * 354.95974 * 7 6 5 10 10 C 1.46501 * 120.00010 * 185.07377 * 9 7 6 11 11 H 1.09004 * 109.47129 * 34.99987 * 10 9 7 12 12 C 1.52995 * 109.47354 * 155.00118 * 10 9 7 13 13 C 1.50702 * 109.47361 * 295.00135 * 12 10 9 14 14 H 1.08007 * 119.99603 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00271 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99945 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00114 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46987 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.46992 * 119.99958 * 17 15 13 20 20 H 1.48503 * 109.46976 * 240.00402 * 17 15 13 21 21 C 1.50704 * 109.47063 * 275.00534 * 10 9 7 22 22 C 1.38239 * 119.99658 * 319.72095 * 21 10 9 23 23 C 1.38238 * 119.99743 * 179.81069 * 22 21 10 24 24 C 1.38226 * 120.00008 * 0.40384 * 23 22 21 25 25 C 1.38242 * 120.00051 * 359.85092 * 24 23 22 26 26 C 1.38227 * 120.00239 * 140.00004 * 21 10 9 27 27 C 1.46923 * 118.74101 * 306.39264 * 6 5 4 28 28 C 1.53040 * 109.43495 * 240.01794 * 2 1 3 29 29 H 1.09001 * 109.47251 * 300.03275 * 1 2 3 30 30 H 1.08997 * 109.46980 * 60.03102 * 1 2 3 31 31 H 1.09002 * 109.47165 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47292 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47037 * 299.96308 * 3 2 1 34 34 H 1.09006 * 109.47268 * 59.96721 * 3 2 1 35 35 H 1.09006 * 109.50021 * 298.70553 * 4 2 1 36 36 H 1.09000 * 109.50068 * 178.63565 * 4 2 1 37 37 H 1.08998 * 109.58891 * 174.40593 * 5 4 2 38 38 H 1.09002 * 109.58682 * 294.69256 * 5 4 2 39 39 H 0.96993 * 120.00055 * 5.07586 * 9 7 6 40 40 H 1.09001 * 109.47064 * 54.99853 * 12 10 9 41 41 H 1.09003 * 109.47359 * 174.99830 * 12 10 9 42 42 H 0.96992 * 119.99812 * 179.97438 * 16 15 13 43 43 H 1.08002 * 119.99843 * 0.02562 * 22 21 10 44 44 H 1.08005 * 119.99595 * 180.23215 * 23 22 21 45 45 H 1.08001 * 120.00085 * 179.83234 * 24 23 22 46 46 H 1.07997 * 119.99642 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.00171 * 359.97438 * 26 21 10 48 48 H 1.08993 * 109.58733 * 173.39775 * 27 6 5 49 49 H 1.09000 * 109.58451 * 293.68413 * 27 6 5 50 50 H 1.09005 * 109.47267 * 181.36138 * 28 2 1 51 51 H 1.08995 * 109.52212 * 61.29855 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 1.5002 -2.1544 1.2647 6 7 1.8631 -2.8092 0.0004 7 6 2.5175 -3.9874 0.0004 8 8 2.7315 -4.5640 -1.0483 9 7 2.9348 -4.5265 1.1631 10 6 3.7419 -5.7491 1.1558 11 1 4.4003 -5.7446 0.2870 12 6 4.5826 -5.8129 2.4325 13 6 5.5759 -4.6796 2.4371 14 1 5.6048 -3.9836 1.6118 15 6 6.4475 -4.5311 3.4950 16 7 6.4119 -5.3784 4.5003 17 14 7.6792 -3.1267 3.5004 18 1 7.5160 -2.3204 2.2641 19 1 7.4429 -2.2657 4.6870 20 1 9.0573 -3.6772 3.5547 21 6 2.8338 -6.9501 1.0916 22 6 1.6632 -6.9715 1.8266 23 6 0.8283 -8.0715 1.7647 24 6 1.1681 -9.1535 0.9744 25 6 2.3413 -9.1342 0.2435 26 6 3.1743 -8.0326 0.3024 27 6 1.4995 -2.1549 -1.2638 28 6 2.0391 -0.7212 -1.2501 29 1 -0.3634 0.5143 0.8897 30 1 -0.3633 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1294 1.4431 0.0005 33 1 1.6764 1.9561 -0.8903 34 1 1.6754 1.9566 0.8897 35 1 1.6957 -0.1934 2.1399 36 1 3.1296 -0.7423 1.2386 37 1 1.9393 -2.7017 2.0988 38 1 0.4155 -2.1355 1.3706 39 1 2.7007 -4.1049 2.0047 40 1 3.9303 -5.7280 3.3016 41 1 5.1154 -6.7632 2.4695 42 1 7.0253 -5.2742 5.2443 43 1 1.3993 -6.1273 2.4464 44 1 -0.0882 -8.0866 2.3360 45 1 0.5171 -10.0140 0.9281 46 1 2.6070 -9.9798 -0.3736 47 1 4.0908 -8.0176 -0.2686 48 1 1.9382 -2.7024 -2.0980 49 1 0.4146 -2.1381 -1.3678 50 1 3.1289 -0.7428 -1.2386 51 1 1.6951 -0.1944 -2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357134526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:28 Heat of formation + Delta-G solvation = -18.293259 kcal Electronic energy + Delta-G solvation = -29501.317520 eV Core-core repulsion = 25785.785588 eV Total energy + Delta-G solvation = -3715.531932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37848 -39.03990 -37.98361 -35.20333 -34.20109 -32.72490 -31.46221 -30.58329 -30.31858 -28.83153 -28.00681 -27.45943 -24.91696 -23.36249 -23.14371 -22.22134 -21.89423 -20.43552 -19.55886 -18.51706 -17.50074 -16.70521 -16.14643 -15.85327 -15.21184 -14.94555 -14.74539 -14.67342 -14.55485 -14.32846 -14.25343 -13.74856 -13.54859 -13.24362 -12.95041 -12.71903 -12.61175 -12.38876 -12.09635 -12.07475 -11.95377 -11.87975 -11.68523 -11.49798 -11.18204 -11.10264 -10.92510 -10.82189 -10.70667 -10.56810 -10.48931 -10.36428 -10.27392 -9.74415 -9.55407 -9.25572 -8.55895 -8.47497 -8.43528 -8.15208 -8.05762 -6.08177 -4.10978 1.84880 1.86936 3.07891 3.25564 3.34370 3.38764 3.73327 4.22430 4.39495 4.45690 4.56933 4.69615 4.71028 5.10630 5.17660 5.28483 5.28653 5.31566 5.32602 5.34067 5.43153 5.48141 5.56100 5.58385 5.59962 5.66006 5.74318 5.78460 5.86679 5.88999 5.97202 6.00253 6.01866 6.06542 6.16528 6.18113 6.22830 6.39951 6.42238 6.48408 6.63417 6.79003 6.90618 6.91622 7.02946 7.17491 7.35873 7.47252 7.54096 7.70730 7.89352 8.27888 8.52460 8.95272 9.15677 9.53796 11.02455 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007559 B = 0.005159 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.264906 B = 5426.356154 C = 8282.268451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.125 4.125 5 C 0.112 3.888 6 N -0.632 5.632 7 C 0.708 3.292 8 O -0.597 6.597 9 N -0.717 5.717 10 C 0.202 3.798 11 H 0.084 0.916 12 C 0.023 3.977 13 C -0.516 4.516 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.068 4.068 22 C -0.106 4.106 23 C -0.126 4.126 24 C -0.136 4.136 25 C -0.123 4.123 26 C -0.108 4.108 27 C 0.132 3.868 28 C -0.124 4.124 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.395 0.605 40 H 0.023 0.977 41 H 0.035 0.965 42 H 0.261 0.739 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.120 0.880 48 H 0.090 0.910 49 H 0.060 0.940 50 H 0.067 0.933 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.490 6.774 -6.599 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.163 4.163 5 C -0.012 4.012 6 N -0.370 5.370 7 C 0.409 3.591 8 O -0.476 6.476 9 N -0.371 5.371 10 C 0.097 3.903 11 H 0.102 0.898 12 C -0.014 4.014 13 C -0.554 4.554 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.069 4.069 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.154 4.154 25 C -0.141 4.141 26 C -0.126 4.126 27 C 0.008 3.992 28 C -0.162 4.162 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.042 0.958 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.138 0.862 48 H 0.108 0.892 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.208 6.300 -7.186 16.303 hybrid contribution 0.650 1.006 0.664 1.370 sum -12.558 7.307 -6.522 15.926 Atomic orbital electron populations 1.21974 0.94695 1.02053 1.01484 1.20502 0.95536 0.95083 0.95331 1.21859 1.01161 0.95270 1.01464 1.21989 1.01778 0.95101 0.97481 1.21609 0.99626 0.93469 0.86490 1.47183 1.61738 1.21465 1.06629 1.15898 0.78130 0.80331 0.84725 1.90852 1.63146 1.62563 1.31070 1.45313 1.56350 1.28755 1.06704 1.20109 0.89004 0.78409 1.02776 0.89781 1.19403 0.94003 0.98388 0.89622 1.21168 1.17215 1.11915 1.05114 0.92379 1.24978 0.97351 0.96223 0.95589 1.69969 1.37852 1.36372 1.08922 0.86569 0.81377 0.82401 0.77883 1.19778 1.21070 1.20993 1.20595 0.95334 0.96394 0.94618 1.20869 0.94551 0.97948 0.99095 1.21020 0.99492 0.94221 0.99658 1.20971 0.97447 0.98405 0.98615 1.21030 0.95078 0.98143 0.99882 1.21006 0.99600 0.93416 0.98589 1.21362 0.99019 0.92178 0.86620 1.22003 1.01445 0.95459 0.97340 0.92766 0.92841 0.92080 0.92623 0.92819 0.92715 0.90913 0.90974 0.90063 0.91630 0.76829 0.95824 0.94684 0.92970 0.86806 0.86871 0.86938 0.86686 0.86241 0.89202 0.92177 0.91400 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.71 37.15 0.29 -0.94 16 2 C -0.06 -0.63 0.77 -154.47 -0.12 -0.74 16 3 C -0.14 -1.24 8.47 37.16 0.31 -0.92 16 4 C -0.13 -1.38 4.90 -26.61 -0.13 -1.51 16 5 C 0.11 1.35 5.96 -3.70 -0.02 1.33 16 6 N -0.63 -9.40 2.97 -178.50 -0.53 -9.93 16 7 C 0.71 13.41 8.25 -86.92 -0.72 12.69 16 8 O -0.60 -13.35 15.49 5.29 0.08 -13.27 16 9 N -0.72 -13.51 3.95 -59.81 -0.24 -13.75 16 10 C 0.20 4.23 2.08 -69.08 -0.14 4.09 16 11 H 0.08 1.94 7.52 -51.93 -0.39 1.55 16 12 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 13 C -0.52 -13.67 8.84 -34.44 -0.30 -13.97 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 17 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.07 -1.31 4.91 -104.62 -0.51 -1.82 16 22 C -0.11 -1.86 9.32 -39.58 -0.37 -2.23 16 23 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 24 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 16 25 C -0.12 -1.93 10.05 -39.58 -0.40 -2.33 16 26 C -0.11 -1.94 9.67 -39.59 -0.38 -2.33 16 27 C 0.13 1.70 5.95 -3.71 -0.02 1.68 16 28 C -0.12 -1.35 4.90 -26.61 -0.13 -1.48 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 4.99 -51.93 -0.26 0.29 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.03 5.57 -51.93 -0.29 0.74 16 38 H 0.07 0.68 6.70 -51.93 -0.35 0.33 16 39 H 0.39 6.89 6.06 -40.82 -0.25 6.65 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.11 1.87 7.73 -52.49 -0.41 1.47 16 44 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 48 H 0.09 1.34 7.03 -51.93 -0.37 0.97 16 49 H 0.06 0.68 6.71 -51.93 -0.35 0.33 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -31.26 398.52 -11.17 -42.43 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.53 Total: 8.56 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -3.67 Total: -11.27 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.03 Total: -48.48 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.26 -11.17 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357134526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.136 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds