Wall clock time and date at job start Tue Mar 31 2020 16:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.45080 * 2 1 4 4 C 1.53042 * 109.46203 * 119.96525 * 2 1 3 5 5 C 1.53198 * 109.33894 * 58.66982 * 4 2 1 6 6 N 1.46930 * 108.77175 * 54.61995 * 5 4 2 7 7 C 1.34777 * 120.62890 * 126.37349 * 6 5 4 8 8 O 1.21580 * 120.00116 * 174.96604 * 7 6 5 9 9 N 1.34779 * 119.99866 * 354.95974 * 7 6 5 10 10 C 1.46501 * 120.00010 * 185.07377 * 9 7 6 11 11 H 1.09004 * 109.47129 * 34.99987 * 10 9 7 12 12 C 1.52995 * 109.47354 * 155.00118 * 10 9 7 13 13 C 1.50702 * 109.47361 * 295.00135 * 12 10 9 14 14 H 1.08007 * 119.99603 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00271 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99945 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00114 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46987 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.46992 * 119.99958 * 17 15 13 20 20 H 1.48503 * 109.46976 * 240.00402 * 17 15 13 21 21 C 1.50704 * 109.47063 * 275.00534 * 10 9 7 22 22 C 1.38239 * 119.99658 * 319.72095 * 21 10 9 23 23 C 1.38238 * 119.99743 * 179.81069 * 22 21 10 24 24 C 1.38226 * 120.00008 * 0.40384 * 23 22 21 25 25 C 1.38242 * 120.00051 * 359.85092 * 24 23 22 26 26 C 1.38227 * 120.00239 * 140.00004 * 21 10 9 27 27 C 1.46923 * 118.74101 * 306.39264 * 6 5 4 28 28 C 1.53040 * 109.43495 * 240.01794 * 2 1 3 29 29 H 1.09001 * 109.47251 * 300.03275 * 1 2 3 30 30 H 1.08997 * 109.46980 * 60.03102 * 1 2 3 31 31 H 1.09002 * 109.47165 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47292 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47037 * 299.96308 * 3 2 1 34 34 H 1.09006 * 109.47268 * 59.96721 * 3 2 1 35 35 H 1.09006 * 109.50021 * 298.70553 * 4 2 1 36 36 H 1.09000 * 109.50068 * 178.63565 * 4 2 1 37 37 H 1.08998 * 109.58891 * 174.40593 * 5 4 2 38 38 H 1.09002 * 109.58682 * 294.69256 * 5 4 2 39 39 H 0.96993 * 120.00055 * 5.07586 * 9 7 6 40 40 H 1.09001 * 109.47064 * 54.99853 * 12 10 9 41 41 H 1.09003 * 109.47359 * 174.99830 * 12 10 9 42 42 H 0.96992 * 119.99812 * 179.97438 * 16 15 13 43 43 H 1.08002 * 119.99843 * 0.02562 * 22 21 10 44 44 H 1.08005 * 119.99595 * 180.23215 * 23 22 21 45 45 H 1.08001 * 120.00085 * 179.83234 * 24 23 22 46 46 H 1.07997 * 119.99642 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.00171 * 359.97438 * 26 21 10 48 48 H 1.08993 * 109.58733 * 173.39775 * 27 6 5 49 49 H 1.09000 * 109.58451 * 293.68413 * 27 6 5 50 50 H 1.09005 * 109.47267 * 181.36138 * 28 2 1 51 51 H 1.08995 * 109.52212 * 61.29855 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 1.5002 -2.1544 1.2647 6 7 1.8631 -2.8092 0.0004 7 6 2.5175 -3.9874 0.0004 8 8 2.7315 -4.5640 -1.0483 9 7 2.9348 -4.5265 1.1631 10 6 3.7419 -5.7491 1.1558 11 1 4.4003 -5.7446 0.2870 12 6 4.5826 -5.8129 2.4325 13 6 5.5759 -4.6796 2.4371 14 1 5.6048 -3.9836 1.6118 15 6 6.4475 -4.5311 3.4950 16 7 6.4119 -5.3784 4.5003 17 14 7.6792 -3.1267 3.5004 18 1 7.5160 -2.3204 2.2641 19 1 7.4429 -2.2657 4.6870 20 1 9.0573 -3.6772 3.5547 21 6 2.8338 -6.9501 1.0916 22 6 1.6632 -6.9715 1.8266 23 6 0.8283 -8.0715 1.7647 24 6 1.1681 -9.1535 0.9744 25 6 2.3413 -9.1342 0.2435 26 6 3.1743 -8.0326 0.3024 27 6 1.4995 -2.1549 -1.2638 28 6 2.0391 -0.7212 -1.2501 29 1 -0.3634 0.5143 0.8897 30 1 -0.3633 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1294 1.4431 0.0005 33 1 1.6764 1.9561 -0.8903 34 1 1.6754 1.9566 0.8897 35 1 1.6957 -0.1934 2.1399 36 1 3.1296 -0.7423 1.2386 37 1 1.9393 -2.7017 2.0988 38 1 0.4155 -2.1355 1.3706 39 1 2.7007 -4.1049 2.0047 40 1 3.9303 -5.7280 3.3016 41 1 5.1154 -6.7632 2.4695 42 1 7.0253 -5.2742 5.2443 43 1 1.3993 -6.1273 2.4464 44 1 -0.0882 -8.0866 2.3360 45 1 0.5171 -10.0140 0.9281 46 1 2.6070 -9.9798 -0.3736 47 1 4.0908 -8.0176 -0.2686 48 1 1.9382 -2.7024 -2.0980 49 1 0.4146 -2.1381 -1.3678 50 1 3.1289 -0.7428 -1.2386 51 1 1.6951 -0.1944 -2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357134526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:27 Heat of formation + Delta-G solvation = -33.934864 kcal Electronic energy + Delta-G solvation = -29501.995791 eV Core-core repulsion = 25785.785588 eV Total energy + Delta-G solvation = -3716.210203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66863 -40.29309 -39.21865 -36.83188 -35.41270 -34.70798 -32.72684 -31.80291 -31.57770 -30.53311 -29.11537 -28.13390 -26.69321 -24.37957 -24.29810 -23.77888 -23.30722 -21.79091 -20.98079 -19.76012 -18.75863 -18.42268 -17.69515 -17.27127 -16.57032 -16.50842 -15.96725 -15.92455 -15.80493 -15.35450 -15.14219 -14.99251 -14.89985 -14.60361 -14.43823 -14.18361 -13.99697 -13.67152 -13.58240 -13.36817 -12.94910 -12.84630 -12.77575 -12.70250 -12.62366 -12.52475 -12.45511 -12.15250 -12.11938 -11.86606 -11.67821 -11.59234 -11.37850 -11.31886 -11.21250 -11.02079 -10.60093 -10.08447 -9.74637 -9.52706 -9.34960 -8.21196 -6.30872 0.52945 0.57265 1.35699 1.38569 1.49961 1.75173 2.24381 2.38417 2.91697 3.08497 3.16264 3.72157 3.81265 3.85658 4.01077 4.03881 4.14708 4.21517 4.28713 4.32107 4.32567 4.41346 4.48031 4.62987 4.67029 4.70974 4.77232 4.79322 4.82527 4.84845 4.90809 4.92655 5.07859 5.10196 5.11896 5.13967 5.20793 5.25065 5.29337 5.36071 5.41936 5.44174 5.60151 5.62072 5.63332 5.64712 5.66157 5.77308 5.91709 6.06980 6.16633 6.21556 6.81058 7.07189 7.37759 7.66173 8.89770 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007559 B = 0.005159 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.264906 B = 5426.356154 C = 8282.268451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.123 4.123 5 C 0.108 3.892 6 N -0.626 5.626 7 C 0.702 3.298 8 O -0.638 6.638 9 N -0.713 5.713 10 C 0.219 3.781 11 H 0.052 0.948 12 C 0.039 3.961 13 C -0.525 4.525 14 H 0.048 0.952 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.954 3.046 18 H -0.273 1.273 19 H -0.273 1.273 20 H -0.281 1.281 21 C -0.095 4.095 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.134 4.134 27 C 0.129 3.871 28 C -0.118 4.118 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.401 0.599 40 H 0.012 0.988 41 H 0.006 0.994 42 H 0.264 0.736 43 H 0.117 0.883 44 H 0.146 0.854 45 H 0.152 0.848 46 H 0.144 0.856 47 H 0.111 0.889 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.043 0.957 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.922 7.858 -6.400 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.194 4.194 4 C -0.161 4.161 5 C -0.015 4.015 6 N -0.363 5.363 7 C 0.403 3.597 8 O -0.520 6.520 9 N -0.368 5.368 10 C 0.113 3.887 11 H 0.070 0.930 12 C 0.002 3.998 13 C -0.563 4.563 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.198 1.198 20 H -0.207 1.207 21 C -0.097 4.097 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.141 4.141 26 C -0.152 4.152 27 C 0.006 3.994 28 C -0.156 4.156 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.239 0.761 40 H 0.030 0.970 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.135 0.865 44 H 0.164 0.836 45 H 0.170 0.830 46 H 0.162 0.838 47 H 0.129 0.871 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.062 0.938 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.664 7.429 -6.973 18.686 hybrid contribution 1.365 0.627 0.579 1.610 sum -14.298 8.056 -6.394 17.613 Atomic orbital electron populations 1.21930 0.92954 1.02093 1.02733 1.20495 0.96796 0.95239 0.93596 1.21828 1.00352 0.94633 1.02637 1.21987 1.00089 0.94677 0.99368 1.21841 1.01219 0.93724 0.84700 1.47276 1.60391 1.20093 1.08566 1.16058 0.78406 0.81318 0.83882 1.90812 1.64840 1.64062 1.32282 1.45116 1.56085 1.28376 1.07211 1.19580 0.89226 0.80586 0.99340 0.93012 1.19131 0.93615 0.96191 0.90912 1.21355 1.17918 1.12238 1.04790 0.93331 1.25733 0.99064 0.98575 0.95178 1.70070 1.38811 1.37981 1.09555 0.85561 0.78884 0.79469 0.78089 1.19723 1.19838 1.20683 1.20477 0.96289 0.96045 0.96844 1.21018 0.94404 0.99264 0.99187 1.21424 1.00008 0.93321 0.99469 1.21459 0.97148 0.99228 0.96927 1.21383 0.94891 0.97884 0.99981 1.21162 1.00338 0.94483 0.99250 1.21532 1.00291 0.92740 0.84814 1.21970 0.99898 0.94455 0.99314 0.91577 0.91633 0.92566 0.93941 0.91546 0.91653 0.88795 0.93704 0.91056 0.88881 0.76110 0.96969 0.97615 0.92682 0.86513 0.83589 0.83040 0.83841 0.87094 0.91778 0.89761 0.93843 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.71 71.98 0.56 -1.33 16 2 C -0.06 -1.06 0.77 -52.16 -0.04 -1.10 16 3 C -0.14 -2.11 8.47 71.98 0.61 -1.50 16 4 C -0.12 -2.57 4.90 30.67 0.15 -2.42 16 5 C 0.11 2.52 5.96 86.36 0.51 3.03 16 6 N -0.63 -18.86 2.97 -836.90 -2.49 -21.35 16 7 C 0.70 27.87 8.25 179.05 1.48 29.34 16 8 O -0.64 -30.17 15.49 -3.97 -0.06 -30.23 16 9 N -0.71 -28.39 3.95 -461.41 -1.82 -30.22 16 10 C 0.22 9.83 2.08 44.24 0.09 9.92 16 11 H 0.05 2.62 7.52 -2.38 -0.02 2.60 16 12 C 0.04 2.01 4.49 29.85 0.13 2.14 16 13 C -0.52 -29.07 8.84 25.60 0.23 -28.84 16 14 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 15 C 0.01 0.74 5.46 84.65 0.46 1.20 16 16 N -0.92 -54.12 13.29 21.45 0.28 -53.83 16 17 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 C -0.10 -3.83 4.91 -19.87 -0.10 -3.93 16 22 C -0.12 -4.23 9.32 22.27 0.21 -4.02 16 23 C -0.12 -3.57 10.05 22.27 0.22 -3.35 16 24 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 25 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 26 C -0.13 -5.03 9.67 22.27 0.22 -4.81 16 27 C 0.13 3.29 5.95 86.36 0.51 3.80 16 28 C -0.12 -2.47 4.90 30.67 0.15 -2.32 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.82 4.99 -2.39 -0.01 0.81 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.81 5.57 -2.39 -0.01 1.80 16 38 H 0.09 1.72 6.70 -2.39 -0.02 1.70 16 39 H 0.40 14.69 6.06 -92.71 -0.56 14.13 16 40 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.12 3.89 7.73 -2.91 -0.02 3.87 16 44 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 45 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 47 H 0.11 4.18 8.04 -2.91 -0.02 4.16 16 48 H 0.06 1.98 7.03 -2.39 -0.02 1.97 16 49 H 0.08 1.76 6.71 -2.39 -0.02 1.75 16 50 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 51 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -70.93 398.52 4.12 -66.81 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.34 Total: 33.81 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 5.84 Total: -10.94 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.03 Total: -105.40 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.06 Total: -30.23 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.93 4.12 -66.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357134526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.875 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds