Wall clock time and date at job start Tue Mar 31 2020 16:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46840 * 2 1 4 4 C 1.38237 * 120.00093 * 90.00564 * 3 2 1 5 5 C 1.38233 * 120.00156 * 180.02562 * 4 3 2 6 6 C 1.38227 * 120.00233 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00399 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47035 * 89.99778 * 7 6 5 9 9 O 1.21283 * 120.00527 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00223 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00321 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.47359 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.52241 * 305.08534 * 12 11 10 14 14 C 1.53034 * 109.49769 * 185.00245 * 12 11 10 15 15 C 1.53046 * 109.53920 * 178.68357 * 14 12 11 16 16 C 1.53186 * 109.31005 * 61.36354 * 15 14 12 17 17 N 1.46932 * 108.77779 * 305.36930 * 16 15 14 18 18 C 1.36937 * 120.62955 * 233.58774 * 17 16 15 19 19 H 1.08000 * 120.00244 * 151.82957 * 18 17 16 20 20 C 1.38815 * 119.99912 * 331.83044 * 18 17 16 21 21 N 1.31612 * 120.00090 * 343.08116 * 20 18 17 22 22 Si 1.86795 * 119.99858 * 163.08060 * 20 18 17 23 23 H 1.48507 * 109.47400 * 89.99986 * 22 20 18 24 24 H 1.48500 * 109.47254 * 209.99839 * 22 20 18 25 25 H 1.48504 * 109.47398 * 329.99728 * 22 20 18 26 26 C 1.46918 * 118.73950 * 53.60702 * 17 16 15 27 27 C 1.38238 * 120.00193 * 0.25402 * 6 5 4 28 28 C 1.38237 * 120.00447 * 270.02275 * 3 2 1 29 29 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47298 * 299.99488 * 1 2 3 31 31 H 1.08996 * 109.47353 * 59.99821 * 1 2 3 32 32 H 1.09006 * 109.46633 * 240.00539 * 2 1 3 33 33 H 1.08996 * 109.47353 * 120.00179 * 2 1 3 34 34 H 1.08004 * 119.99670 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.99834 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47014 * 330.00318 * 7 6 5 37 37 H 1.08999 * 109.47603 * 210.00226 * 7 6 5 38 38 H 0.97005 * 119.99916 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.46687 * 60.00350 * 11 10 8 40 40 H 1.08999 * 109.47284 * 300.00654 * 11 10 8 41 41 H 1.09003 * 109.46127 * 298.70705 * 14 12 11 42 42 H 1.09003 * 109.46419 * 58.67654 * 14 12 11 43 43 H 1.08997 * 109.49877 * 181.31819 * 15 14 12 44 44 H 1.09003 * 109.49417 * 301.38242 * 15 14 12 45 45 H 1.08998 * 109.58871 * 65.15485 * 16 15 14 46 46 H 1.09001 * 109.58727 * 185.57787 * 16 15 14 47 47 H 0.97004 * 120.00272 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.58899 * 186.60820 * 26 17 16 49 49 H 1.09003 * 109.58759 * 66.18301 * 26 17 16 50 50 H 1.07992 * 120.00573 * 179.72745 * 27 6 5 51 51 H 1.08006 * 119.99563 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7230 3.3759 1.1972 6 6 2.9532 4.0276 0.0001 7 6 3.4544 5.4488 0.0001 8 6 4.9613 5.4501 0.0006 9 8 5.5687 4.4003 0.0005 10 7 5.6343 6.6178 0.0012 11 6 7.0993 6.6190 0.0023 12 6 7.6082 8.0620 0.0035 13 1 7.1731 8.6023 -0.8372 14 6 9.1334 8.0658 -0.1212 15 6 9.6408 9.5093 -0.1532 16 6 9.2609 10.2089 1.1556 17 7 7.8106 10.0832 1.3554 18 6 7.0381 11.1920 1.5764 19 1 5.9995 11.1944 1.2802 20 6 7.5899 12.3131 2.1811 21 7 8.7269 12.2147 2.8367 22 14 6.7187 13.9613 2.0645 23 1 5.7847 14.1098 3.2095 24 1 7.7223 15.0553 2.0993 25 1 5.9563 14.0293 0.7919 26 6 7.2052 8.7452 1.3140 27 6 2.7183 3.3777 -1.1971 28 6 2.2622 2.0727 -1.1971 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0824 1.5634 2.1325 35 1 2.9026 3.8851 2.1325 36 1 3.0904 5.9625 0.8899 37 1 3.0909 5.9623 -0.8900 38 1 5.1486 7.4575 0.0017 39 1 7.4636 6.1056 -0.8875 40 1 7.4624 6.1053 0.8925 41 1 9.5689 7.5466 0.7326 42 1 9.4239 7.5585 -1.0412 43 1 10.7250 9.5115 -0.2655 44 1 9.1870 10.0359 -0.9928 45 1 9.7863 9.7391 1.9870 46 1 9.5318 11.2631 1.0984 47 1 9.1123 12.9980 3.2596 48 1 6.1198 8.8336 1.3613 49 1 7.5630 8.1559 2.1584 50 1 2.8940 3.8883 -2.1323 51 1 2.0815 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359395579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:22 Heat of formation + Delta-G solvation = -19.535104 kcal Electronic energy + Delta-G solvation = -27469.403133 eV Core-core repulsion = 23753.817350 eV Total energy + Delta-G solvation = -3715.585783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.14626 -39.10809 -37.76711 -34.99564 -34.61576 -33.02003 -31.61160 -31.03871 -30.46787 -30.26127 -27.56615 -25.38914 -25.11934 -23.39734 -22.86939 -22.12922 -21.14985 -20.77662 -20.18628 -19.05237 -17.10725 -16.60037 -16.48614 -16.05209 -15.69193 -15.19183 -15.04236 -14.83962 -14.32803 -14.00301 -13.93047 -13.80048 -13.59386 -13.46111 -13.42620 -13.04016 -12.80350 -12.50655 -12.41663 -12.20723 -12.16021 -11.91862 -11.89027 -11.43307 -11.29812 -11.05477 -11.02226 -10.98963 -10.72079 -10.51609 -10.26081 -10.19847 -9.97975 -9.85457 -9.56875 -9.43901 -9.00461 -8.89653 -8.63139 -8.49200 -6.69464 -5.81803 -3.24825 1.18759 1.32344 2.72736 3.26289 3.34232 3.41703 3.43256 3.73617 4.45429 4.45918 4.58601 4.64001 4.82825 4.88187 4.95864 5.06497 5.12945 5.15010 5.25283 5.29068 5.30963 5.39238 5.42641 5.46051 5.47156 5.58824 5.60648 5.67598 5.82286 5.83454 5.93255 5.96398 5.96868 6.00354 6.22782 6.28933 6.32040 6.36500 6.47757 6.48930 6.53123 6.57533 6.69036 6.76228 6.84482 6.89468 6.94941 7.37894 7.61816 7.65263 7.75566 8.32503 8.41794 9.17955 9.81588 10.38669 11.26480 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.002024 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.841528 B =13828.204237 C =14674.876101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.065 4.065 7 C -0.105 4.105 8 C 0.512 3.488 9 O -0.539 6.539 10 N -0.725 5.725 11 C 0.128 3.872 12 C -0.117 4.117 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.154 3.846 27 C -0.103 4.103 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.403 0.597 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.017 0.983 46 H 0.086 0.914 47 H 0.254 0.746 48 H 0.050 0.950 49 H 0.018 0.982 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 -18.892 -7.548 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.145 4.145 8 C 0.298 3.702 9 O -0.416 6.416 10 N -0.377 5.377 11 C 0.004 3.996 12 C -0.138 4.138 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.044 3.956 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.121 4.121 28 C -0.136 4.136 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.104 0.896 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.036 0.964 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.194 -19.493 -7.443 24.167 hybrid contribution -0.484 1.399 0.028 1.480 sum -12.678 -18.094 -7.415 23.305 Atomic orbital electron populations 1.21747 0.94799 1.01572 1.02218 1.20535 0.96080 0.92833 1.02780 1.19861 0.99390 0.96097 0.93275 1.20950 1.00331 0.94775 0.97452 1.20980 0.98636 0.94880 0.97468 1.19266 0.98998 0.94750 0.93569 1.20701 0.92840 0.95559 1.05417 1.20477 0.89567 0.83843 0.76359 1.90713 1.70244 1.31366 1.49228 1.46101 1.08003 1.08527 1.75078 1.21440 0.78730 0.97792 1.01632 1.21950 0.96823 0.93312 1.01712 0.90903 1.21343 0.94199 0.97874 1.00381 1.22173 0.98760 0.95377 1.01786 1.20793 0.83647 1.00519 0.90685 1.44033 1.03795 1.00680 1.82857 1.19135 0.94717 0.91545 1.32987 0.91795 1.25050 0.97911 0.99406 0.97248 1.70033 1.20481 1.28738 1.35270 0.86322 0.78721 0.83952 0.77894 1.21404 1.21557 1.20505 1.20894 0.96431 0.87443 0.92492 1.20950 0.98910 0.94879 0.97348 1.20934 1.00482 0.94753 0.97417 0.92515 0.92554 0.92582 0.91145 0.91113 0.86258 0.86157 0.87807 0.87989 0.76222 0.92121 0.91705 0.92499 0.93475 0.93195 0.92761 0.96458 0.89588 0.93611 0.93154 0.96407 0.86300 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.09 -0.84 5.13 -104.63 -0.54 -1.38 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 5 C -0.10 -1.13 9.70 -39.59 -0.38 -1.51 16 6 C -0.07 -0.74 4.37 -104.63 -0.46 -1.19 16 7 C -0.11 -1.05 5.83 -29.04 -0.17 -1.22 16 8 C 0.51 6.89 7.82 -10.99 -0.09 6.81 16 9 O -0.54 -9.41 16.03 5.55 0.09 -9.32 16 10 N -0.73 -9.33 5.33 -60.29 -0.32 -9.66 16 11 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 12 C -0.12 -1.90 2.37 -90.50 -0.21 -2.11 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.10 -1.63 5.17 -26.69 -0.14 -1.77 16 15 C -0.14 -2.64 6.08 -26.61 -0.16 -2.81 16 16 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 17 N -0.59 -14.32 2.99 -172.32 -0.52 -14.83 16 18 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 19 H 0.06 1.65 7.88 -52.49 -0.41 1.23 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -25.81 11.20 55.49 0.62 -25.19 16 22 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 C 0.15 3.05 5.60 -3.72 -0.02 3.03 16 27 C -0.10 -1.11 9.70 -39.58 -0.38 -1.49 16 28 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.40 4.52 7.71 -40.82 -0.31 4.21 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.05 0.94 7.14 -51.93 -0.37 0.57 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 51 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 407.86 15.07 6.15 6.15 Total: -1.00 -31.96 407.86 -11.40 -43.35 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.99 Total: 2.58 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.39 Total: -9.26 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.22 Total: -49.68 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.96 -11.40 -43.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359395579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.818 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds