Wall clock time and date at job start Tue Mar 31 2020 16:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46840 * 2 1 4 4 C 1.38237 * 120.00093 * 90.00564 * 3 2 1 5 5 C 1.38233 * 120.00156 * 180.02562 * 4 3 2 6 6 C 1.38227 * 120.00233 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00399 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47035 * 89.99778 * 7 6 5 9 9 O 1.21283 * 120.00527 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00223 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00321 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.47359 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.52241 * 305.08534 * 12 11 10 14 14 C 1.53034 * 109.49769 * 185.00245 * 12 11 10 15 15 C 1.53046 * 109.53920 * 178.68357 * 14 12 11 16 16 C 1.53186 * 109.31005 * 61.36354 * 15 14 12 17 17 N 1.46932 * 108.77779 * 305.36930 * 16 15 14 18 18 C 1.36937 * 120.62955 * 233.58774 * 17 16 15 19 19 H 1.08000 * 120.00244 * 151.82957 * 18 17 16 20 20 C 1.38815 * 119.99912 * 331.83044 * 18 17 16 21 21 N 1.31612 * 120.00090 * 343.08116 * 20 18 17 22 22 Si 1.86795 * 119.99858 * 163.08060 * 20 18 17 23 23 H 1.48507 * 109.47400 * 89.99986 * 22 20 18 24 24 H 1.48500 * 109.47254 * 209.99839 * 22 20 18 25 25 H 1.48504 * 109.47398 * 329.99728 * 22 20 18 26 26 C 1.46918 * 118.73950 * 53.60702 * 17 16 15 27 27 C 1.38238 * 120.00193 * 0.25402 * 6 5 4 28 28 C 1.38237 * 120.00447 * 270.02275 * 3 2 1 29 29 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47298 * 299.99488 * 1 2 3 31 31 H 1.08996 * 109.47353 * 59.99821 * 1 2 3 32 32 H 1.09006 * 109.46633 * 240.00539 * 2 1 3 33 33 H 1.08996 * 109.47353 * 120.00179 * 2 1 3 34 34 H 1.08004 * 119.99670 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.99834 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47014 * 330.00318 * 7 6 5 37 37 H 1.08999 * 109.47603 * 210.00226 * 7 6 5 38 38 H 0.97005 * 119.99916 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.46687 * 60.00350 * 11 10 8 40 40 H 1.08999 * 109.47284 * 300.00654 * 11 10 8 41 41 H 1.09003 * 109.46127 * 298.70705 * 14 12 11 42 42 H 1.09003 * 109.46419 * 58.67654 * 14 12 11 43 43 H 1.08997 * 109.49877 * 181.31819 * 15 14 12 44 44 H 1.09003 * 109.49417 * 301.38242 * 15 14 12 45 45 H 1.08998 * 109.58871 * 65.15485 * 16 15 14 46 46 H 1.09001 * 109.58727 * 185.57787 * 16 15 14 47 47 H 0.97004 * 120.00272 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.58899 * 186.60820 * 26 17 16 49 49 H 1.09003 * 109.58759 * 66.18301 * 26 17 16 50 50 H 1.07992 * 120.00573 * 179.72745 * 27 6 5 51 51 H 1.08006 * 119.99563 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7230 3.3759 1.1972 6 6 2.9532 4.0276 0.0001 7 6 3.4544 5.4488 0.0001 8 6 4.9613 5.4501 0.0006 9 8 5.5687 4.4003 0.0005 10 7 5.6343 6.6178 0.0012 11 6 7.0993 6.6190 0.0023 12 6 7.6082 8.0620 0.0035 13 1 7.1731 8.6023 -0.8372 14 6 9.1334 8.0658 -0.1212 15 6 9.6408 9.5093 -0.1532 16 6 9.2609 10.2089 1.1556 17 7 7.8106 10.0832 1.3554 18 6 7.0381 11.1920 1.5764 19 1 5.9995 11.1944 1.2802 20 6 7.5899 12.3131 2.1811 21 7 8.7269 12.2147 2.8367 22 14 6.7187 13.9613 2.0645 23 1 5.7847 14.1098 3.2095 24 1 7.7223 15.0553 2.0993 25 1 5.9563 14.0293 0.7919 26 6 7.2052 8.7452 1.3140 27 6 2.7183 3.3777 -1.1971 28 6 2.2622 2.0727 -1.1971 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0824 1.5634 2.1325 35 1 2.9026 3.8851 2.1325 36 1 3.0904 5.9625 0.8899 37 1 3.0909 5.9623 -0.8900 38 1 5.1486 7.4575 0.0017 39 1 7.4636 6.1056 -0.8875 40 1 7.4624 6.1053 0.8925 41 1 9.5689 7.5466 0.7326 42 1 9.4239 7.5585 -1.0412 43 1 10.7250 9.5115 -0.2655 44 1 9.1870 10.0359 -0.9928 45 1 9.7863 9.7391 1.9870 46 1 9.5318 11.2631 1.0984 47 1 9.1123 12.9980 3.2596 48 1 6.1198 8.8336 1.3613 49 1 7.5630 8.1559 2.1584 50 1 2.8940 3.8883 -2.1323 51 1 2.0815 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359395579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:21 Heat of formation + Delta-G solvation = -36.215345 kcal Electronic energy + Delta-G solvation = -27470.126443 eV Core-core repulsion = 23753.817350 eV Total energy + Delta-G solvation = -3716.309092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.09866 -40.06168 -39.24160 -36.26164 -35.47066 -34.64956 -32.53912 -32.28253 -31.78582 -31.57041 -28.43216 -27.23375 -26.39861 -24.14588 -23.78508 -23.62143 -22.53950 -21.74825 -21.20209 -20.52703 -18.69318 -17.94197 -17.39874 -16.92351 -16.78566 -16.55763 -16.25322 -15.87770 -15.73839 -15.39844 -15.04542 -14.78411 -14.57634 -14.54700 -14.49209 -14.19826 -14.01498 -13.74569 -13.70922 -13.65766 -13.00867 -12.93788 -12.86552 -12.84100 -12.52732 -12.47519 -12.26336 -12.04700 -11.97330 -11.81736 -11.69262 -11.63782 -11.57648 -11.33790 -11.09906 -10.86903 -10.52300 -10.03037 -9.77290 -9.39225 -8.66478 -7.85818 -5.31638 0.41995 0.55189 1.47501 1.49493 1.58596 1.69553 2.28127 2.52063 2.92684 3.29330 3.60903 3.71931 3.90772 3.95565 4.00330 4.02219 4.03375 4.15040 4.17273 4.22168 4.40937 4.49178 4.52225 4.58690 4.60300 4.63162 4.64269 4.75409 4.77384 4.79500 4.89075 4.92019 5.01579 5.06671 5.09524 5.10835 5.19367 5.24789 5.25029 5.33956 5.39424 5.40363 5.51417 5.54252 5.58508 5.67849 5.70819 5.75720 5.78678 6.16030 6.40078 6.60871 7.15938 7.29912 7.87436 8.39841 9.20549 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.002024 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.841528 B =13828.204237 C =14674.876101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.120 4.120 6 C -0.084 4.084 7 C -0.098 4.098 8 C 0.512 3.488 9 O -0.582 6.582 10 N -0.720 5.720 11 C 0.139 3.861 12 C -0.099 4.099 13 H 0.078 0.922 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.260 4.260 19 H 0.072 0.928 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.153 3.847 27 C -0.116 4.116 28 C -0.128 4.128 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.413 0.587 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.054 0.946 45 H -0.009 1.009 46 H 0.051 0.949 47 H 0.248 0.752 48 H 0.060 0.940 49 H 0.003 0.997 50 H 0.130 0.870 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.330 -19.796 -9.231 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.138 4.138 6 C -0.084 4.084 7 C -0.137 4.137 8 C 0.300 3.700 9 O -0.462 6.462 10 N -0.372 5.372 11 C 0.014 3.986 12 C -0.119 4.119 13 H 0.097 0.903 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.090 0.910 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.192 1.192 26 C 0.027 3.973 27 C -0.134 4.134 28 C -0.146 4.146 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.249 0.751 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.009 0.991 46 H 0.070 0.930 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.021 0.979 50 H 0.148 0.852 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.820 -20.401 -9.144 26.283 hybrid contribution 0.006 1.607 0.587 1.711 sum -13.814 -18.794 -8.557 24.845 Atomic orbital electron populations 1.21721 0.93956 1.02392 1.01940 1.20582 0.96740 0.91450 1.03386 1.20187 0.98797 0.97203 0.93067 1.21213 1.00337 0.94789 0.98411 1.21206 0.99194 0.95524 0.97846 1.19482 0.99563 0.95540 0.93815 1.20731 0.89945 0.95512 1.07539 1.21053 0.90917 0.83026 0.74992 1.90696 1.71386 1.32830 1.51249 1.46048 1.07383 1.09084 1.74669 1.21207 0.79801 0.96180 1.01382 1.21706 0.96916 0.93909 0.99406 0.90340 1.21344 0.94085 0.96327 1.01858 1.22000 1.00062 0.96300 0.98537 1.20622 0.83459 0.98776 0.92412 1.44306 1.03978 1.01881 1.83034 1.19541 0.95257 0.92401 1.31797 0.90997 1.25827 0.98845 1.02702 0.97545 1.70198 1.22208 1.29132 1.36777 0.85296 0.77434 0.79655 0.78163 1.21248 1.22277 1.19196 1.21026 0.96788 0.85498 0.93997 1.21214 0.99014 0.95414 0.97765 1.21234 1.00227 0.94793 0.98342 0.91149 0.92943 0.92750 0.90418 0.90643 0.84971 0.85762 0.86000 0.85374 0.75058 0.91349 0.93023 0.92884 0.90287 0.91366 0.92705 0.99102 0.93035 0.94257 0.92177 0.97906 0.85169 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 71.98 0.71 -0.85 16 2 C -0.08 -1.11 6.06 29.85 0.18 -0.93 16 3 C -0.09 -1.70 5.13 -19.87 -0.10 -1.81 16 4 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 5 C -0.12 -2.58 9.70 22.27 0.22 -2.37 16 6 C -0.08 -1.79 4.37 -19.87 -0.09 -1.88 16 7 C -0.10 -1.75 5.83 29.10 0.17 -1.58 16 8 C 0.51 12.99 7.82 87.66 0.69 13.67 16 9 O -0.58 -19.87 16.03 -3.04 -0.05 -19.92 16 10 N -0.72 -17.06 5.33 -463.05 -2.47 -19.53 16 11 C 0.14 3.76 5.07 86.38 0.44 4.20 16 12 C -0.10 -3.01 2.37 -10.72 -0.03 -3.03 16 13 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.10 -3.00 5.17 30.62 0.16 -2.84 16 15 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 16 C 0.17 8.26 5.30 86.36 0.46 8.72 16 17 N -0.61 -29.59 2.99 -699.11 -2.09 -31.68 16 18 C -0.26 -13.80 9.58 84.03 0.81 -12.99 16 19 H 0.07 3.63 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 21 N -0.94 -55.25 11.20 21.65 0.24 -55.01 16 22 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 26 C 0.15 5.92 5.60 86.36 0.48 6.40 16 27 C -0.12 -2.35 9.70 22.27 0.22 -2.14 16 28 C -0.13 -2.40 9.70 22.27 0.22 -2.19 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.90 8.09 -2.38 -0.02 0.89 16 33 H 0.07 0.91 8.09 -2.39 -0.02 0.90 16 34 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.12 1.72 8.09 -2.39 -0.02 1.71 16 37 H 0.13 1.60 8.08 -2.39 -0.02 1.58 16 38 H 0.41 8.22 7.71 -92.70 -0.71 7.51 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 47 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 48 H 0.06 2.17 7.14 -2.39 -0.02 2.16 16 49 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 50 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 51 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -70.23 407.86 3.18 -67.05 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.18 Total: 22.13 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 5.35 Total: -9.00 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -4.32 Total: -106.22 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.05 Total: -19.92 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.23 3.18 -67.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359395579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.830 kcal (2) G-P(sol) polarization free energy of solvation -70.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds