Wall clock time and date at job start Tue Mar 31 2020 16:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47375 * 2 1 4 4 C 1.38231 * 120.00061 * 90.00124 * 3 2 1 5 5 C 1.38238 * 120.00097 * 180.02562 * 4 3 2 6 6 C 1.38238 * 119.99743 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99744 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47169 * 89.99805 * 7 6 5 9 9 O 1.21285 * 120.00107 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99890 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99695 * 180.27085 * 10 8 7 12 12 C 1.53009 * 109.47090 * 179.72608 * 11 10 8 13 13 H 1.09001 * 109.49277 * 55.06752 * 12 11 10 14 14 C 1.53034 * 109.49675 * 175.16515 * 12 11 10 15 15 C 1.53039 * 109.53736 * 181.31589 * 14 12 11 16 16 C 1.53191 * 109.31480 * 298.63659 * 15 14 12 17 17 N 1.46923 * 108.77441 * 54.63403 * 16 15 14 18 18 C 1.36929 * 120.63258 * 126.41759 * 17 16 15 19 19 H 1.08002 * 120.00459 * 331.80804 * 18 17 16 20 20 C 1.38813 * 120.00573 * 151.80829 * 18 17 16 21 21 N 1.31624 * 119.99306 * 343.07839 * 20 18 17 22 22 Si 1.86797 * 120.00587 * 163.07750 * 20 18 17 23 23 H 1.48508 * 109.47041 * 89.99911 * 22 20 18 24 24 H 1.48495 * 109.47318 * 209.99840 * 22 20 18 25 25 H 1.48497 * 109.47230 * 330.00286 * 22 20 18 26 26 C 1.46929 * 118.73960 * 306.38961 * 17 16 15 27 27 C 1.38234 * 120.00329 * 0.24781 * 6 5 4 28 28 C 1.38238 * 119.99690 * 359.49456 * 27 6 5 29 29 H 1.08995 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47202 * 300.00346 * 1 2 3 31 31 H 1.08999 * 109.47225 * 59.99615 * 1 2 3 32 32 H 1.09005 * 109.47202 * 239.99654 * 2 1 3 33 33 H 1.08999 * 109.47225 * 120.00385 * 2 1 3 34 34 H 1.07997 * 119.99970 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.00078 * 179.97438 * 5 4 3 36 36 H 1.08995 * 109.47579 * 329.99813 * 7 6 5 37 37 H 1.08998 * 109.47149 * 209.99609 * 7 6 5 38 38 H 0.96995 * 120.00009 * 0.02562 * 10 8 7 39 39 H 1.08999 * 109.47893 * 299.72709 * 11 10 8 40 40 H 1.09007 * 109.47202 * 59.72883 * 11 10 8 41 41 H 1.09003 * 109.46283 * 301.33691 * 14 12 11 42 42 H 1.08999 * 109.46501 * 61.29765 * 14 12 11 43 43 H 1.08999 * 109.50037 * 178.67891 * 15 14 12 44 44 H 1.09001 * 109.49518 * 58.58802 * 15 14 12 45 45 H 1.08999 * 109.58488 * 294.84759 * 16 15 14 46 46 H 1.08995 * 109.70338 * 174.49252 * 16 15 14 47 47 H 0.97000 * 119.99711 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.58751 * 293.82342 * 26 17 16 49 49 H 1.08995 * 109.58728 * 173.39834 * 26 17 16 50 50 H 1.07993 * 120.00169 * 179.73384 * 27 6 5 51 51 H 1.08000 * 119.99852 * 180.22416 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9525 4.0279 -0.0001 7 6 3.4538 5.4490 -0.0001 8 6 4.9608 5.4501 -0.0007 9 8 5.5680 4.4002 -0.0016 10 7 5.6338 6.6179 -0.0013 11 6 7.0988 6.6189 -0.0079 12 6 7.6078 8.0618 -0.0141 13 1 7.1777 8.6029 0.8288 14 6 9.1338 8.0656 0.1006 15 6 9.6414 9.5092 0.1275 16 6 9.2531 10.2073 -1.1796 17 7 7.8016 10.0815 -1.3697 18 6 7.0278 11.1900 -1.5871 19 1 7.3323 12.1474 -1.1907 20 6 5.8517 11.0835 -2.3168 21 7 5.6402 10.0273 -3.0733 22 14 4.5694 12.4387 -2.2251 23 1 4.8402 13.4485 -3.2799 24 1 3.2188 11.8571 -2.4318 25 1 4.6300 13.0881 -0.8911 26 6 7.1963 8.7435 -1.3229 27 6 2.7167 3.3782 -1.1972 28 6 2.2614 2.0729 -1.1972 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0824 1.5635 2.1324 35 1 2.9028 3.8851 2.1324 36 1 3.0905 5.9625 0.8901 37 1 3.0897 5.9627 -0.8898 38 1 5.1482 7.4575 -0.0010 39 1 7.4666 6.1078 0.8818 40 1 7.4585 6.1029 -0.8982 41 1 9.4302 7.5593 1.0192 42 1 9.5637 7.5455 -0.7554 43 1 10.7263 9.5114 0.2328 44 1 9.1927 10.0369 0.9691 45 1 9.7730 9.7363 -2.0138 46 1 9.5248 11.2615 -1.1280 47 1 4.8182 9.9526 -3.5830 48 1 7.5486 8.1532 -2.1688 49 1 6.1107 8.8319 -1.3632 50 1 2.8918 3.8890 -2.1325 51 1 2.0806 1.5641 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359395580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:26 Heat of formation + Delta-G solvation = -19.938226 kcal Electronic energy + Delta-G solvation = -27885.934736 eV Core-core repulsion = 24170.331472 eV Total energy + Delta-G solvation = -3715.603263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.99343 -38.96401 -37.71308 -34.86581 -34.45025 -33.07854 -31.60143 -30.92879 -30.67914 -29.81844 -27.47769 -25.39130 -25.09645 -23.30718 -22.75644 -22.16938 -21.03584 -20.64166 -20.02150 -19.01226 -16.98673 -16.59170 -16.38407 -15.91667 -15.57652 -15.17653 -14.92805 -14.71310 -14.12289 -13.91884 -13.87607 -13.67881 -13.59974 -13.41280 -13.28977 -12.95835 -12.87567 -12.39715 -12.35503 -12.23804 -12.07143 -11.79721 -11.78450 -11.33941 -11.23428 -11.04760 -10.93239 -10.88641 -10.74220 -10.52000 -10.26925 -10.19399 -9.95193 -9.75761 -9.53114 -9.45000 -8.89490 -8.69217 -8.52319 -8.51483 -6.70552 -5.84032 -3.26505 1.30251 1.43229 2.91514 3.31953 3.39892 3.41900 3.44322 3.87474 4.44271 4.57133 4.68352 4.76866 4.93764 4.98853 5.11625 5.14299 5.21083 5.28081 5.30832 5.33762 5.44175 5.54227 5.54488 5.56628 5.58082 5.58997 5.65670 5.77042 5.79761 5.91546 5.97072 6.06123 6.07429 6.11273 6.28310 6.28992 6.39616 6.40962 6.48442 6.57860 6.61665 6.64208 6.74872 6.82564 6.84424 6.99361 7.00611 7.28280 7.57481 7.74329 7.83820 8.39452 8.51878 9.16182 9.79493 10.37314 11.23879 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.002509 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.568975 B =11155.881511 C =12532.567951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.062 4.062 7 C -0.107 4.107 8 C 0.513 3.487 9 O -0.543 6.543 10 N -0.720 5.720 11 C 0.132 3.868 12 C -0.127 4.127 13 H 0.069 0.931 14 C -0.100 4.100 15 C -0.133 4.133 16 C 0.143 3.857 17 N -0.592 5.592 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.179 3.821 27 C -0.101 4.101 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.405 0.595 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.253 0.747 48 H 0.018 0.982 49 H 0.087 0.913 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 -14.560 7.966 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.137 4.137 5 C -0.121 4.121 6 C -0.062 4.062 7 C -0.146 4.146 8 C 0.299 3.701 9 O -0.421 6.421 10 N -0.372 5.372 11 C 0.008 3.992 12 C -0.148 4.148 13 H 0.087 0.913 14 C -0.138 4.138 15 C -0.172 4.172 16 C 0.017 3.983 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.729 3.271 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.053 3.947 27 C -0.119 4.119 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.240 0.760 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.036 0.964 49 H 0.106 0.894 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.465 -15.316 7.845 18.383 hybrid contribution -0.815 1.190 -0.089 1.446 sum -7.280 -14.126 7.756 17.683 Atomic orbital electron populations 1.21746 0.94857 1.01499 1.02228 1.20524 0.96034 0.92885 1.02708 1.19843 0.99607 0.96066 0.93290 1.20914 1.00602 0.94791 0.97355 1.20944 0.98973 0.94868 0.97356 1.19285 0.98670 0.94772 0.93521 1.20709 0.93031 0.95415 1.05492 1.20425 0.89500 0.83849 0.76323 1.90694 1.70279 1.31386 1.49709 1.46061 1.07938 1.08616 1.74590 1.21363 0.78961 0.97705 1.01202 1.22140 0.95934 0.93717 1.03019 0.91263 1.21333 0.95052 0.97046 1.00416 1.21987 0.98695 0.96047 1.00467 1.20932 0.86307 0.97848 0.93263 1.44035 1.00776 1.03338 1.83322 1.19181 1.02882 0.88918 1.27087 0.91755 1.25044 1.00518 0.97654 0.96487 1.70048 1.25949 1.29729 1.28900 0.86343 0.81221 0.81592 0.77902 1.21406 1.21523 1.20528 1.20799 0.99656 0.84331 0.89887 1.21009 0.98513 0.94834 0.97575 1.20947 1.00401 0.94754 0.97411 0.92570 0.92603 0.92545 0.91152 0.91206 0.86392 0.86340 0.88096 0.87681 0.75958 0.92506 0.91869 0.93447 0.92504 0.93083 0.92438 0.96527 0.92918 0.93668 0.96379 0.89439 0.86079 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.15 0.37 -0.68 16 2 C -0.08 -0.70 6.06 -27.89 -0.17 -0.87 16 3 C -0.09 -0.96 5.13 -104.62 -0.54 -1.50 16 4 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 5 C -0.10 -1.26 9.70 -39.58 -0.38 -1.64 16 6 C -0.06 -0.81 4.37 -104.62 -0.46 -1.27 16 7 C -0.11 -1.31 5.83 -29.03 -0.17 -1.48 16 8 C 0.51 8.10 7.82 -10.98 -0.09 8.01 16 9 O -0.54 -10.47 16.03 5.55 0.09 -10.38 16 10 N -0.72 -11.25 5.33 -60.29 -0.32 -11.57 16 11 C 0.13 2.18 5.07 -4.04 -0.02 2.16 16 12 C -0.13 -2.26 2.38 -90.50 -0.21 -2.48 16 13 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 14 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 15 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 16 C 0.14 2.94 6.52 -3.71 -0.02 2.91 16 17 N -0.59 -14.30 2.99 -172.32 -0.52 -14.81 16 18 C -0.25 -6.64 9.58 -15.06 -0.14 -6.79 16 19 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 20 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 21 N -0.90 -24.95 11.20 55.49 0.62 -24.33 16 22 Si 0.90 20.80 29.59 -169.99 -5.03 15.77 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.18 4.00 4.39 -3.71 -0.02 3.99 16 27 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 28 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 37 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 38 H 0.41 6.03 7.70 -40.82 -0.31 5.71 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 47 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.09 2.11 5.26 -51.93 -0.27 1.83 16 50 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 51 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -31.08 407.84 -11.40 -42.47 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -8.99 Total: 5.69 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.39 Total: -8.99 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.22 Total: -50.71 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.08 -11.40 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359395580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.535 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds