Wall clock time and date at job start Tue Mar 31 2020 16:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47375 * 2 1 4 4 C 1.38231 * 120.00061 * 90.00124 * 3 2 1 5 5 C 1.38238 * 120.00097 * 180.02562 * 4 3 2 6 6 C 1.38238 * 119.99743 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.99744 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47169 * 89.99805 * 7 6 5 9 9 O 1.21285 * 120.00107 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99890 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99695 * 180.27085 * 10 8 7 12 12 C 1.53009 * 109.47090 * 179.72608 * 11 10 8 13 13 H 1.09001 * 109.49277 * 55.06752 * 12 11 10 14 14 C 1.53034 * 109.49675 * 175.16515 * 12 11 10 15 15 C 1.53039 * 109.53736 * 181.31589 * 14 12 11 16 16 C 1.53191 * 109.31480 * 298.63659 * 15 14 12 17 17 N 1.46923 * 108.77441 * 54.63403 * 16 15 14 18 18 C 1.36929 * 120.63258 * 126.41759 * 17 16 15 19 19 H 1.08002 * 120.00459 * 331.80804 * 18 17 16 20 20 C 1.38813 * 120.00573 * 151.80829 * 18 17 16 21 21 N 1.31624 * 119.99306 * 343.07839 * 20 18 17 22 22 Si 1.86797 * 120.00587 * 163.07750 * 20 18 17 23 23 H 1.48508 * 109.47041 * 89.99911 * 22 20 18 24 24 H 1.48495 * 109.47318 * 209.99840 * 22 20 18 25 25 H 1.48497 * 109.47230 * 330.00286 * 22 20 18 26 26 C 1.46929 * 118.73960 * 306.38961 * 17 16 15 27 27 C 1.38234 * 120.00329 * 0.24781 * 6 5 4 28 28 C 1.38238 * 119.99690 * 359.49456 * 27 6 5 29 29 H 1.08995 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47202 * 300.00346 * 1 2 3 31 31 H 1.08999 * 109.47225 * 59.99615 * 1 2 3 32 32 H 1.09005 * 109.47202 * 239.99654 * 2 1 3 33 33 H 1.08999 * 109.47225 * 120.00385 * 2 1 3 34 34 H 1.07997 * 119.99970 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.00078 * 179.97438 * 5 4 3 36 36 H 1.08995 * 109.47579 * 329.99813 * 7 6 5 37 37 H 1.08998 * 109.47149 * 209.99609 * 7 6 5 38 38 H 0.96995 * 120.00009 * 0.02562 * 10 8 7 39 39 H 1.08999 * 109.47893 * 299.72709 * 11 10 8 40 40 H 1.09007 * 109.47202 * 59.72883 * 11 10 8 41 41 H 1.09003 * 109.46283 * 301.33691 * 14 12 11 42 42 H 1.08999 * 109.46501 * 61.29765 * 14 12 11 43 43 H 1.08999 * 109.50037 * 178.67891 * 15 14 12 44 44 H 1.09001 * 109.49518 * 58.58802 * 15 14 12 45 45 H 1.08999 * 109.58488 * 294.84759 * 16 15 14 46 46 H 1.08995 * 109.70338 * 174.49252 * 16 15 14 47 47 H 0.97000 * 119.99711 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.58751 * 293.82342 * 26 17 16 49 49 H 1.08995 * 109.58728 * 173.39834 * 26 17 16 50 50 H 1.07993 * 120.00169 * 179.73384 * 27 6 5 51 51 H 1.08000 * 119.99852 * 180.22416 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9525 4.0279 -0.0001 7 6 3.4538 5.4490 -0.0001 8 6 4.9608 5.4501 -0.0007 9 8 5.5680 4.4002 -0.0016 10 7 5.6338 6.6179 -0.0013 11 6 7.0988 6.6189 -0.0079 12 6 7.6078 8.0618 -0.0141 13 1 7.1777 8.6029 0.8288 14 6 9.1338 8.0656 0.1006 15 6 9.6414 9.5092 0.1275 16 6 9.2531 10.2073 -1.1796 17 7 7.8016 10.0815 -1.3697 18 6 7.0278 11.1900 -1.5871 19 1 7.3323 12.1474 -1.1907 20 6 5.8517 11.0835 -2.3168 21 7 5.6402 10.0273 -3.0733 22 14 4.5694 12.4387 -2.2251 23 1 4.8402 13.4485 -3.2799 24 1 3.2188 11.8571 -2.4318 25 1 4.6300 13.0881 -0.8911 26 6 7.1963 8.7435 -1.3229 27 6 2.7167 3.3782 -1.1972 28 6 2.2614 2.0729 -1.1972 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0824 1.5635 2.1324 35 1 2.9028 3.8851 2.1324 36 1 3.0905 5.9625 0.8901 37 1 3.0897 5.9627 -0.8898 38 1 5.1482 7.4575 -0.0010 39 1 7.4666 6.1078 0.8818 40 1 7.4585 6.1029 -0.8982 41 1 9.4302 7.5593 1.0192 42 1 9.5637 7.5455 -0.7554 43 1 10.7263 9.5114 0.2328 44 1 9.1927 10.0369 0.9691 45 1 9.7730 9.7363 -2.0138 46 1 9.5248 11.2615 -1.1280 47 1 4.8182 9.9526 -3.5830 48 1 7.5486 8.1532 -2.1688 49 1 6.1107 8.8319 -1.3632 50 1 2.8918 3.8890 -2.1325 51 1 2.0806 1.5641 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359395580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:25 Heat of formation + Delta-G solvation = -35.626462 kcal Electronic energy + Delta-G solvation = -27886.615029 eV Core-core repulsion = 24170.331472 eV Total energy + Delta-G solvation = -3716.283556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.10797 -40.06653 -39.23351 -36.15555 -35.47565 -34.79667 -32.80987 -32.02938 -31.80535 -31.42944 -28.47471 -27.24343 -26.44193 -24.16458 -23.81382 -23.63709 -22.41803 -21.75153 -21.20485 -20.52206 -18.72892 -17.98403 -17.42553 -16.98389 -16.78667 -16.57673 -16.09658 -15.89135 -15.74672 -15.32818 -15.08092 -14.77640 -14.58110 -14.54957 -14.51150 -14.21545 -14.03318 -13.79103 -13.71989 -13.68071 -12.97596 -12.92231 -12.87947 -12.83225 -12.54169 -12.50933 -12.22359 -12.06001 -11.98276 -11.78804 -11.70529 -11.64623 -11.55544 -11.31792 -11.09340 -10.87958 -10.53391 -10.02629 -9.79138 -9.40966 -8.64725 -7.84797 -5.30743 0.40280 0.53301 1.47978 1.50545 1.59662 1.66794 2.28832 2.53010 2.91029 3.27815 3.62162 3.69888 3.88751 3.94301 4.00790 4.05133 4.08986 4.14974 4.17493 4.20371 4.35685 4.46750 4.51327 4.54970 4.58837 4.61214 4.65164 4.74691 4.76769 4.81781 4.88384 4.89603 5.03930 5.05830 5.09161 5.15385 5.17632 5.23480 5.24367 5.36948 5.39241 5.39618 5.50965 5.53210 5.56667 5.68591 5.69801 5.73863 5.79085 6.14241 6.41304 6.57815 7.17297 7.26201 7.87933 8.40781 9.20588 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.002509 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.568975 B =11155.881511 C =12532.567951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.082 4.082 7 C -0.099 4.099 8 C 0.513 3.487 9 O -0.580 6.580 10 N -0.719 5.719 11 C 0.140 3.860 12 C -0.110 4.110 13 H 0.072 0.928 14 C -0.100 4.100 15 C -0.121 4.121 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.263 4.263 19 H 0.064 0.936 20 C -0.046 4.046 21 N -0.931 5.931 22 Si 0.963 3.037 23 H -0.291 1.291 24 H -0.289 1.289 25 H -0.271 1.271 26 C 0.189 3.811 27 C -0.122 4.122 28 C -0.128 4.128 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.409 0.591 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.008 0.992 46 H 0.051 0.949 47 H 0.250 0.750 48 H -0.016 1.016 49 H 0.066 0.934 50 H 0.119 0.881 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 -15.055 9.887 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.144 4.144 5 C -0.133 4.133 6 C -0.082 4.082 7 C -0.139 4.139 8 C 0.300 3.700 9 O -0.460 6.460 10 N -0.371 5.371 11 C 0.015 3.985 12 C -0.131 4.131 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.160 4.160 16 C 0.010 3.990 17 N -0.334 5.334 18 C -0.393 4.393 19 H 0.081 0.919 20 C -0.241 4.241 21 N -0.577 5.577 22 Si 0.792 3.208 23 H -0.218 1.218 24 H -0.215 1.215 25 H -0.196 1.196 26 C 0.063 3.937 27 C -0.140 4.140 28 C -0.146 4.146 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.245 0.755 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.026 0.974 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.002 0.998 49 H 0.084 0.916 50 H 0.137 0.863 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.826 -15.795 9.783 19.794 hybrid contribution -0.639 1.333 -0.740 1.653 sum -7.465 -14.462 9.043 18.619 Atomic orbital electron populations 1.21723 0.93947 1.02434 1.01922 1.20579 0.96731 0.91247 1.03488 1.20202 0.98721 0.97301 0.92937 1.21241 1.00045 0.94628 0.98444 1.21203 0.99010 0.95515 0.97573 1.19439 0.99586 0.95195 0.94010 1.20718 0.90245 0.95835 1.07088 1.20998 0.90860 0.83043 0.75052 1.90668 1.71334 1.32566 1.51471 1.46087 1.07679 1.08968 1.74322 1.21222 0.79642 0.96674 1.00947 1.21899 0.97390 0.93743 1.00052 0.90961 1.21362 0.93486 0.97079 1.01842 1.21866 1.00668 0.95636 0.97833 1.21117 0.84383 0.98406 0.95143 1.44328 1.02272 1.03286 1.83525 1.19473 1.03458 0.89690 1.26715 0.91869 1.25735 1.02218 0.99782 0.96409 1.70198 1.26174 1.31473 1.29807 0.85351 0.78706 0.78907 0.77882 1.21800 1.21454 1.19579 1.20589 0.98212 0.83733 0.91134 1.21188 0.99422 0.95695 0.97691 1.21205 1.00317 0.94524 0.98574 0.91020 0.92725 0.93052 0.90610 0.90215 0.84276 0.85096 0.85476 0.86931 0.75500 0.91096 0.93671 0.90256 0.92935 0.89945 0.92338 0.97407 0.93001 0.94091 0.99800 0.91569 0.86308 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 71.98 0.71 -1.08 16 2 C -0.08 -1.23 6.06 29.85 0.18 -1.05 16 3 C -0.09 -1.90 5.13 -19.86 -0.10 -2.00 16 4 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 5 C -0.12 -2.70 9.70 22.27 0.22 -2.48 16 6 C -0.08 -2.12 4.37 -19.87 -0.09 -2.20 16 7 C -0.10 -2.40 5.83 29.10 0.17 -2.23 16 8 C 0.51 16.16 7.82 87.66 0.69 16.84 16 9 O -0.58 -22.53 16.03 -3.05 -0.05 -22.58 16 10 N -0.72 -22.39 5.33 -463.03 -2.47 -24.85 16 11 C 0.14 4.56 5.07 86.38 0.44 4.99 16 12 C -0.11 -3.83 2.38 -10.71 -0.03 -3.86 16 13 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 14 C -0.10 -3.05 5.17 30.62 0.16 -2.89 16 15 C -0.12 -3.81 6.08 30.67 0.19 -3.63 16 16 C 0.13 5.49 6.52 86.36 0.56 6.05 16 17 N -0.61 -29.77 2.99 -699.11 -2.09 -31.87 16 18 C -0.26 -14.03 9.58 84.03 0.81 -13.23 16 19 H 0.06 3.31 7.88 -2.91 -0.02 3.29 16 20 C -0.05 -2.46 4.92 84.86 0.42 -2.04 16 21 N -0.93 -52.73 11.20 21.65 0.24 -52.48 16 22 Si 0.96 43.03 29.59 68.60 2.03 45.06 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 C 0.19 8.62 4.39 86.36 0.38 9.00 16 27 C -0.12 -3.17 9.70 22.27 0.22 -2.95 16 28 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.04 8.09 -2.38 -0.02 1.02 16 33 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 34 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.13 2.35 8.09 -2.39 -0.02 2.33 16 37 H 0.11 2.53 8.08 -2.39 -0.02 2.51 16 38 H 0.41 12.15 7.70 -92.71 -0.71 11.44 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 47 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 48 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 49 H 0.07 3.28 5.26 -2.39 -0.01 3.27 16 50 H 0.12 2.98 8.06 -2.91 -0.02 2.95 16 51 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -67.76 407.84 3.19 -64.57 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.18 Total: 30.06 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 5.35 Total: -7.90 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -4.32 Total: -109.20 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.76 3.19 -64.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359395580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.945 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds