Wall clock time and date at job start Tue Mar 31 2020 16:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47027 * 2 1 4 4 C 1.38237 * 120.00402 * 90.00182 * 3 2 1 5 5 C 1.38237 * 120.00538 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99817 * 359.95664 * 5 4 3 7 7 C 1.50693 * 120.00324 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.49325 * 359.93444 * 7 6 5 9 9 C 1.53035 * 109.50121 * 119.99873 * 7 6 5 10 10 C 1.53035 * 109.54084 * 181.32137 * 9 7 6 11 11 C 1.53196 * 109.31265 * 298.63211 * 10 9 7 12 12 N 1.46935 * 108.77238 * 54.63573 * 11 10 9 13 13 C 1.34774 * 120.63024 * 126.36911 * 12 11 10 14 14 O 1.21586 * 119.99740 * 185.22812 * 13 12 11 15 15 N 1.34777 * 119.99875 * 5.22733 * 13 12 11 16 16 C 1.46506 * 119.99914 * 175.01666 * 15 13 12 17 17 C 1.52998 * 109.47194 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47197 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00260 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00315 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99544 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00142 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47219 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46936 * 120.00194 * 22 20 18 25 25 H 1.48498 * 109.46696 * 239.99876 * 22 20 18 26 26 C 1.46924 * 118.73549 * 306.64233 * 12 11 10 27 27 C 1.38243 * 119.99550 * 0.27528 * 6 5 4 28 28 C 1.38229 * 120.00143 * 359.51442 * 27 6 5 29 29 H 1.09006 * 109.47021 * 300.00117 * 1 2 3 30 30 H 1.09000 * 109.47448 * 59.99675 * 1 2 3 31 31 H 1.08994 * 109.47232 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46700 * 239.99731 * 2 1 3 33 33 H 1.09003 * 109.46830 * 119.99933 * 2 1 3 34 34 H 1.08006 * 119.99681 * 359.97263 * 4 3 2 35 35 H 1.07992 * 120.00024 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.46235 * 61.29617 * 9 7 6 37 37 H 1.09006 * 109.45812 * 301.34067 * 9 7 6 38 38 H 1.08995 * 109.50048 * 178.68436 * 10 9 7 39 39 H 1.09004 * 109.50364 * 58.58287 * 10 9 7 40 40 H 1.08999 * 109.58822 * 294.85448 * 11 10 9 41 41 H 1.09000 * 109.59147 * 174.41885 * 11 10 9 42 42 H 0.97005 * 120.00239 * 355.01824 * 15 13 12 43 43 H 1.08999 * 109.47170 * 300.00035 * 16 15 13 44 44 H 1.09006 * 109.46822 * 60.00146 * 16 15 13 45 45 H 1.08999 * 109.47030 * 300.00046 * 17 16 15 46 46 H 1.08993 * 109.47218 * 59.99975 * 17 16 15 47 47 H 0.97002 * 119.99903 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.58297 * 173.14034 * 26 12 11 49 49 H 1.08996 * 109.59207 * 293.56765 * 26 12 11 50 50 H 1.07999 * 119.99413 * 179.72783 * 27 6 5 51 51 H 1.08000 * 119.99735 * 180.25058 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9557 4.0268 0.0000 7 6 3.4591 5.4472 -0.0001 8 1 3.5788 5.7907 1.0275 9 6 4.8078 5.5111 -0.7205 10 6 5.3355 6.9473 -0.6924 11 6 4.3513 7.8632 -1.4267 12 7 3.0179 7.6984 -0.8317 13 6 2.3261 8.7675 -0.3903 14 8 1.2668 8.6106 0.1856 15 7 2.8084 10.0105 -0.5874 16 6 2.0069 11.1762 -0.2062 17 6 2.7792 12.4555 -0.5343 18 6 1.9551 13.6545 -0.1416 19 1 0.9783 13.5177 0.2984 20 6 2.4485 14.9261 -0.3431 21 7 3.6386 15.0926 -0.8775 22 14 1.4266 16.4123 0.1430 23 1 0.1349 15.9583 0.7178 24 1 2.1650 17.2117 1.1535 25 1 1.1675 17.2485 -1.0565 26 6 2.4559 6.3454 -0.7215 27 6 2.7207 3.3766 -1.1972 28 6 2.2636 2.0721 -1.1971 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0824 1.5635 2.1325 35 1 2.9036 3.8848 2.1324 36 1 4.6827 5.1904 -1.7547 37 1 5.5184 4.8533 -0.2199 38 1 6.3069 6.9878 -1.1851 39 1 5.4374 7.2774 0.3415 40 1 4.3166 7.5913 -2.4817 41 1 4.6712 8.9002 -1.3247 42 1 3.6861 10.1334 -0.9816 43 1 1.0674 11.1676 -0.7588 44 1 1.7997 11.1405 0.8634 45 1 3.7189 12.4643 0.0180 46 1 2.9861 12.4908 -1.6038 47 1 3.9859 15.9872 -1.0189 48 1 1.5258 6.3812 -0.1542 49 1 2.2636 5.9473 -1.7177 50 1 2.8975 3.8869 -2.1324 51 1 2.0839 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367863465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:45 Heat of formation + Delta-G solvation = -30.672705 kcal Electronic energy + Delta-G solvation = -27535.012496 eV Core-core repulsion = 23818.943751 eV Total energy + Delta-G solvation = -3716.068745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53153 -39.57737 -37.55081 -34.92093 -34.82504 -33.03887 -32.50718 -31.60359 -31.15540 -29.57932 -28.39845 -25.64564 -24.76700 -24.05447 -23.07653 -22.71639 -21.42548 -20.96672 -20.24572 -19.25391 -17.92481 -16.53977 -16.43304 -15.99504 -15.64807 -15.53499 -15.10140 -14.63972 -14.49475 -14.32230 -14.21232 -13.93644 -13.89015 -13.69035 -13.53807 -13.34840 -13.27654 -12.86572 -12.70900 -12.35778 -12.27010 -11.99641 -11.72391 -11.44648 -11.33723 -11.20249 -11.11304 -11.04907 -10.96745 -10.80213 -10.63756 -10.59681 -10.30708 -9.84497 -9.52255 -9.22982 -9.12859 -8.83266 -8.62506 -8.43747 -8.14246 -6.08130 -4.10414 1.09481 1.19612 2.91863 3.29467 3.37038 3.42670 3.49713 3.58543 4.22420 4.37862 4.45595 4.46624 4.54190 4.65269 4.70736 4.79425 4.87853 4.91778 4.99432 5.01366 5.16259 5.20889 5.25021 5.28837 5.29147 5.37068 5.44604 5.53748 5.59881 5.63843 5.68168 5.69486 5.77978 5.82790 5.87421 5.90025 5.96847 6.11277 6.20548 6.30005 6.38335 6.42491 6.45768 6.62317 6.79395 6.80023 7.03206 7.21167 7.57716 7.64840 7.91339 8.26802 8.40288 8.94382 9.01375 9.54284 11.03601 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.001899 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.893348 B =14738.773454 C =15394.349127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.075 4.075 7 C -0.064 4.064 8 H 0.082 0.918 9 C -0.107 4.107 10 C -0.135 4.135 11 C 0.110 3.890 12 N -0.635 5.635 13 C 0.703 3.297 14 O -0.596 6.596 15 N -0.739 5.739 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.141 3.859 27 C -0.110 4.110 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.261 0.739 48 H 0.094 0.906 49 H 0.062 0.938 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -30.261 -1.271 30.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.075 4.075 7 C -0.083 4.083 8 H 0.101 0.899 9 C -0.145 4.145 10 C -0.174 4.174 11 C -0.014 4.014 12 N -0.373 5.373 13 C 0.404 3.596 14 O -0.475 6.475 15 N -0.394 5.394 16 C 0.016 3.984 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C 0.017 3.983 27 C -0.128 4.128 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.228 0.772 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.112 0.888 49 H 0.080 0.920 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.519 -30.169 -0.912 30.288 hybrid contribution 0.089 0.979 0.029 0.984 sum 2.607 -29.190 -0.883 29.320 Atomic orbital electron populations 1.21754 0.94694 1.01635 1.02392 1.20532 0.96229 0.92750 1.02664 1.19882 0.99412 0.96266 0.93269 1.20995 1.00074 0.94891 0.97480 1.21080 0.99320 0.94724 0.97642 1.19730 0.99265 0.95255 0.93263 1.20486 0.95480 0.91075 1.01288 0.89943 1.21555 0.95665 0.96589 1.00677 1.21938 0.98545 0.95142 1.01763 1.21627 0.82371 1.00313 0.97055 1.47260 1.18504 1.05897 1.65654 1.15964 0.83554 0.80741 0.79333 1.90873 1.23812 1.85042 1.47745 1.45712 1.21940 1.04683 1.67113 1.21598 0.94117 0.83418 0.99247 1.19326 0.95873 0.89859 0.97430 1.21096 1.03062 0.90445 1.41198 0.92154 1.24997 0.95091 0.99181 0.95066 1.69967 1.17031 1.22335 1.44014 0.86456 0.80418 0.82489 0.78205 1.19571 1.20957 1.20962 1.21313 0.96918 0.79966 1.00083 1.20988 0.99497 0.94633 0.97672 1.20985 1.00144 0.94890 0.97438 0.92494 0.92486 0.92478 0.91171 0.91185 0.86277 0.86066 0.91568 0.91606 0.90482 0.91249 0.91437 0.90020 0.77218 0.92862 0.92736 0.96001 0.95996 0.92948 0.88784 0.91977 0.86052 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.52 16 2 C -0.08 -0.52 6.06 -27.89 -0.17 -0.69 16 3 C -0.09 -0.72 5.13 -104.63 -0.54 -1.26 16 4 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 5 C -0.11 -1.03 9.67 -39.58 -0.38 -1.41 16 6 C -0.07 -0.71 4.79 -104.62 -0.50 -1.21 16 7 C -0.06 -0.63 2.50 -91.88 -0.23 -0.86 16 8 H 0.08 0.91 7.88 -51.92 -0.41 0.50 16 9 C -0.11 -0.89 4.96 -26.69 -0.13 -1.02 16 10 C -0.14 -1.17 6.08 -26.61 -0.16 -1.33 16 11 C 0.11 1.15 6.39 -3.70 -0.02 1.13 16 12 N -0.63 -8.80 2.98 -178.76 -0.53 -9.34 16 13 C 0.70 12.98 8.30 -86.92 -0.72 12.26 16 14 O -0.60 -13.30 15.77 5.29 0.08 -13.21 16 15 N -0.74 -13.68 5.47 -65.22 -0.36 -14.04 16 16 C 0.14 3.07 5.62 -4.04 -0.02 3.04 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 22 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.14 1.72 5.59 -3.93 -0.02 1.70 16 27 C -0.11 -0.96 8.67 -39.58 -0.34 -1.31 16 28 C -0.12 -0.96 9.70 -39.59 -0.38 -1.35 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.12 1.03 7.95 -52.49 -0.42 0.62 16 36 H 0.07 0.50 7.45 -51.93 -0.39 0.12 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.87 5.65 -51.93 -0.29 0.57 16 42 H 0.39 6.32 5.96 -40.82 -0.24 6.08 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.09 1.39 6.99 -51.93 -0.36 1.02 16 49 H 0.06 0.68 7.20 -51.93 -0.37 0.30 16 50 H 0.12 0.92 7.08 -52.49 -0.37 0.55 16 51 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 405.13 15.07 6.11 6.11 Total: -1.00 -32.65 405.13 -11.92 -44.57 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.74 Total: 2.21 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -4.20 Total: -7.35 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.15 Total: -48.83 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.65 -11.92 -44.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367863465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.899 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds