Wall clock time and date at job start Tue Mar 31 2020 16:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47027 * 2 1 4 4 C 1.38237 * 120.00402 * 90.00182 * 3 2 1 5 5 C 1.38237 * 120.00538 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99817 * 359.95664 * 5 4 3 7 7 C 1.50693 * 120.00324 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.49325 * 359.93444 * 7 6 5 9 9 C 1.53035 * 109.50121 * 119.99873 * 7 6 5 10 10 C 1.53035 * 109.54084 * 181.32137 * 9 7 6 11 11 C 1.53196 * 109.31265 * 298.63211 * 10 9 7 12 12 N 1.46935 * 108.77238 * 54.63573 * 11 10 9 13 13 C 1.34774 * 120.63024 * 126.36911 * 12 11 10 14 14 O 1.21586 * 119.99740 * 185.22812 * 13 12 11 15 15 N 1.34777 * 119.99875 * 5.22733 * 13 12 11 16 16 C 1.46506 * 119.99914 * 175.01666 * 15 13 12 17 17 C 1.52998 * 109.47194 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47197 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00260 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00315 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99544 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00142 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47219 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46936 * 120.00194 * 22 20 18 25 25 H 1.48498 * 109.46696 * 239.99876 * 22 20 18 26 26 C 1.46924 * 118.73549 * 306.64233 * 12 11 10 27 27 C 1.38243 * 119.99550 * 0.27528 * 6 5 4 28 28 C 1.38229 * 120.00143 * 359.51442 * 27 6 5 29 29 H 1.09006 * 109.47021 * 300.00117 * 1 2 3 30 30 H 1.09000 * 109.47448 * 59.99675 * 1 2 3 31 31 H 1.08994 * 109.47232 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46700 * 239.99731 * 2 1 3 33 33 H 1.09003 * 109.46830 * 119.99933 * 2 1 3 34 34 H 1.08006 * 119.99681 * 359.97263 * 4 3 2 35 35 H 1.07992 * 120.00024 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.46235 * 61.29617 * 9 7 6 37 37 H 1.09006 * 109.45812 * 301.34067 * 9 7 6 38 38 H 1.08995 * 109.50048 * 178.68436 * 10 9 7 39 39 H 1.09004 * 109.50364 * 58.58287 * 10 9 7 40 40 H 1.08999 * 109.58822 * 294.85448 * 11 10 9 41 41 H 1.09000 * 109.59147 * 174.41885 * 11 10 9 42 42 H 0.97005 * 120.00239 * 355.01824 * 15 13 12 43 43 H 1.08999 * 109.47170 * 300.00035 * 16 15 13 44 44 H 1.09006 * 109.46822 * 60.00146 * 16 15 13 45 45 H 1.08999 * 109.47030 * 300.00046 * 17 16 15 46 46 H 1.08993 * 109.47218 * 59.99975 * 17 16 15 47 47 H 0.97002 * 119.99903 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.58297 * 173.14034 * 26 12 11 49 49 H 1.08996 * 109.59207 * 293.56765 * 26 12 11 50 50 H 1.07999 * 119.99413 * 179.72783 * 27 6 5 51 51 H 1.08000 * 119.99735 * 180.25058 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9557 4.0268 0.0000 7 6 3.4591 5.4472 -0.0001 8 1 3.5788 5.7907 1.0275 9 6 4.8078 5.5111 -0.7205 10 6 5.3355 6.9473 -0.6924 11 6 4.3513 7.8632 -1.4267 12 7 3.0179 7.6984 -0.8317 13 6 2.3261 8.7675 -0.3903 14 8 1.2668 8.6106 0.1856 15 7 2.8084 10.0105 -0.5874 16 6 2.0069 11.1762 -0.2062 17 6 2.7792 12.4555 -0.5343 18 6 1.9551 13.6545 -0.1416 19 1 0.9783 13.5177 0.2984 20 6 2.4485 14.9261 -0.3431 21 7 3.6386 15.0926 -0.8775 22 14 1.4266 16.4123 0.1430 23 1 0.1349 15.9583 0.7178 24 1 2.1650 17.2117 1.1535 25 1 1.1675 17.2485 -1.0565 26 6 2.4559 6.3454 -0.7215 27 6 2.7207 3.3766 -1.1972 28 6 2.2636 2.0721 -1.1971 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0824 1.5635 2.1325 35 1 2.9036 3.8848 2.1324 36 1 4.6827 5.1904 -1.7547 37 1 5.5184 4.8533 -0.2199 38 1 6.3069 6.9878 -1.1851 39 1 5.4374 7.2774 0.3415 40 1 4.3166 7.5913 -2.4817 41 1 4.6712 8.9002 -1.3247 42 1 3.6861 10.1334 -0.9816 43 1 1.0674 11.1676 -0.7588 44 1 1.7997 11.1405 0.8634 45 1 3.7189 12.4643 0.0180 46 1 2.9861 12.4908 -1.6038 47 1 3.9859 15.9872 -1.0189 48 1 1.5258 6.3812 -0.1542 49 1 2.2636 5.9473 -1.7177 50 1 2.8975 3.8869 -2.1324 51 1 2.0839 1.5629 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367863465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:44 Heat of formation + Delta-G solvation = -47.350349 kcal Electronic energy + Delta-G solvation = -27535.735693 eV Core-core repulsion = 23818.943751 eV Total energy + Delta-G solvation = -3716.791942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61805 -40.50025 -38.59584 -36.63036 -35.68419 -34.80739 -33.62694 -32.43578 -31.79739 -31.35962 -29.18399 -27.13796 -25.89330 -25.18187 -23.72606 -23.44827 -22.98187 -22.13353 -21.18997 -20.38561 -19.15871 -18.50021 -17.33524 -17.14089 -16.75772 -16.50734 -16.45002 -16.03431 -15.45272 -15.32438 -15.29313 -15.15206 -14.81167 -14.58843 -14.43789 -14.28841 -14.18804 -14.00914 -13.95610 -13.53730 -13.28733 -13.05592 -12.95649 -12.58327 -12.52133 -12.41458 -12.26750 -12.08909 -11.96733 -11.86173 -11.71588 -11.66262 -11.57201 -11.43251 -11.37341 -11.10635 -10.60992 -10.18834 -9.78650 -9.57976 -9.28685 -8.24196 -6.34287 0.42778 0.53798 1.41115 1.41892 1.54927 1.65684 2.10087 2.40800 2.85009 2.98924 3.10573 3.63305 3.76490 3.89700 3.94023 4.03837 4.08411 4.16158 4.18103 4.31047 4.37192 4.44230 4.50204 4.53172 4.54453 4.58325 4.63705 4.72535 4.73299 4.80151 4.84558 4.86974 4.96397 5.06777 5.08166 5.09580 5.17526 5.20004 5.25403 5.30437 5.39096 5.39459 5.48530 5.51932 5.58222 5.60967 5.74925 5.76809 5.78741 5.93472 6.15476 6.16974 6.78446 6.97277 7.34889 7.53818 8.87906 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.001899 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.893348 B =14738.773454 C =15394.349127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.086 4.086 7 C -0.053 4.053 8 H 0.064 0.936 9 C -0.101 4.101 10 C -0.130 4.130 11 C 0.102 3.898 12 N -0.626 5.626 13 C 0.698 3.302 14 O -0.640 6.640 15 N -0.734 5.734 16 C 0.160 3.840 17 C 0.025 3.975 18 C -0.546 4.546 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.925 5.925 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.140 3.860 27 C -0.114 4.114 28 C -0.123 4.123 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.405 0.595 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.008 0.992 46 H 0.010 0.990 47 H 0.266 0.734 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.135 0.865 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -31.591 -2.252 31.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.087 4.087 7 C -0.073 4.073 8 H 0.083 0.917 9 C -0.139 4.139 10 C -0.168 4.168 11 C -0.020 4.020 12 N -0.363 5.363 13 C 0.400 3.600 14 O -0.523 6.523 15 N -0.391 5.391 16 C 0.035 3.965 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.564 5.564 22 Si 0.790 3.210 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C 0.017 3.983 27 C -0.132 4.132 28 C -0.141 4.141 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.243 0.757 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.153 0.847 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.229 -31.543 -1.917 31.766 hybrid contribution -0.097 1.299 0.320 1.341 sum 3.132 -30.245 -1.597 30.448 Atomic orbital electron populations 1.21745 0.94621 1.02303 1.01711 1.20570 0.96183 0.91629 1.03621 1.20179 0.98763 0.97249 0.93093 1.21205 0.99992 0.94720 0.98435 1.21225 0.99961 0.95393 0.97802 1.19723 1.00210 0.94953 0.93799 1.20338 0.95914 0.90852 1.00169 0.91709 1.21541 0.94479 0.96483 1.01379 1.21919 0.99145 0.94724 1.00979 1.21954 0.80724 1.00903 0.98431 1.47320 1.19366 1.05202 1.64368 1.16109 0.83334 0.81385 0.79213 1.90839 1.25932 1.85749 1.49749 1.45410 1.22212 1.04053 1.67392 1.21088 0.93629 0.83582 0.98173 1.19121 0.95236 0.90687 0.96219 1.21480 1.03451 0.91874 1.41674 0.92400 1.25857 0.96248 1.02159 0.94819 1.70061 1.18415 1.23346 1.44628 0.85388 0.78844 0.78631 0.78129 1.19107 1.20175 1.20126 1.21423 0.96393 0.79472 1.00973 1.21166 0.99306 0.94993 0.97770 1.21264 0.99679 0.94846 0.98285 0.93336 0.93006 0.91157 0.90044 0.90426 0.85104 0.86166 0.90006 0.90691 0.87810 0.92628 0.89020 0.90307 0.75721 0.93875 0.94068 0.97323 0.97161 0.92527 0.91902 0.90013 0.84739 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 71.98 0.71 -0.83 16 2 C -0.08 -0.87 6.06 29.85 0.18 -0.69 16 3 C -0.09 -1.39 5.13 -19.87 -0.10 -1.49 16 4 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 5 C -0.13 -2.35 9.67 22.27 0.22 -2.14 16 6 C -0.09 -1.59 4.79 -19.87 -0.10 -1.68 16 7 C -0.05 -1.03 2.50 -11.61 -0.03 -1.06 16 8 H 0.06 1.47 7.88 -2.38 -0.02 1.45 16 9 C -0.10 -1.45 4.96 30.62 0.15 -1.30 16 10 C -0.13 -1.95 6.08 30.67 0.19 -1.77 16 11 C 0.10 1.95 6.39 86.36 0.55 2.50 16 12 N -0.63 -17.12 2.98 -837.72 -2.50 -19.62 16 13 C 0.70 26.27 8.30 179.06 1.49 27.76 16 14 O -0.64 -29.64 15.77 -3.99 -0.06 -29.70 16 15 N -0.73 -27.59 5.47 -478.52 -2.62 -30.21 16 16 C 0.16 7.24 5.62 86.38 0.49 7.73 16 17 C 0.02 1.28 5.09 29.85 0.15 1.43 16 18 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 20 C 0.01 0.45 5.46 84.66 0.46 0.91 16 21 N -0.92 -54.29 13.29 21.45 0.28 -54.00 16 22 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.14 3.40 5.59 86.22 0.48 3.88 16 27 C -0.11 -1.82 8.67 22.27 0.19 -1.63 16 28 C -0.12 -1.81 9.70 22.27 0.22 -1.59 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 33 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 34 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.12 2.15 7.95 -2.91 -0.02 2.12 16 36 H 0.08 0.96 7.45 -2.39 -0.02 0.94 16 37 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.57 5.65 -2.39 -0.01 1.55 16 42 H 0.40 13.04 5.96 -92.70 -0.55 12.49 16 43 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.06 1.94 6.99 -2.38 -0.02 1.92 16 49 H 0.08 1.67 7.20 -2.39 -0.02 1.65 16 50 H 0.13 1.70 7.08 -2.91 -0.02 1.68 16 51 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -71.07 405.13 3.18 -67.89 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.35 Total: 22.19 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.70 Total: -2.59 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -4.83 Total: -103.83 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.06 Total: -29.70 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.07 3.18 -67.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367863465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.537 kcal (2) G-P(sol) polarization free energy of solvation -71.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds