Wall clock time and date at job start Tue Mar 31 2020 16:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46970 * 2 1 4 4 C 1.38236 * 119.99760 * 89.99921 * 3 2 1 5 5 C 1.38241 * 119.99869 * 179.97438 * 4 3 2 6 6 C 1.38242 * 119.99763 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99514 * 179.97438 * 6 5 4 8 8 H 1.08992 * 109.49947 * 0.05799 * 7 6 5 9 9 C 1.53039 * 109.49283 * 239.99623 * 7 6 5 10 10 C 1.53044 * 109.53815 * 178.65365 * 9 7 6 11 11 C 1.53197 * 109.31117 * 61.36312 * 10 9 7 12 12 N 1.46927 * 108.77389 * 305.36820 * 11 10 9 13 13 C 1.34774 * 120.62771 * 233.58084 * 12 11 10 14 14 O 1.21591 * 119.99961 * 174.79146 * 13 12 11 15 15 N 1.34782 * 120.00316 * 354.80189 * 13 12 11 16 16 C 1.46500 * 120.00038 * 184.97833 * 15 13 12 17 17 C 1.52998 * 109.46772 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47073 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99950 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00165 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99763 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99948 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47545 * 59.99852 * 22 20 18 24 24 H 1.48498 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47319 * 299.99692 * 22 20 18 26 26 C 1.46926 * 118.73969 * 53.61026 * 12 11 10 27 27 C 1.38237 * 119.99809 * 0.26768 * 6 5 4 28 28 C 1.38231 * 120.00212 * 359.54352 * 27 6 5 29 29 H 1.09004 * 109.46852 * 60.00234 * 1 2 3 30 30 H 1.09001 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46993 * 300.00244 * 1 2 3 32 32 H 1.09000 * 109.47241 * 240.00210 * 2 1 3 33 33 H 1.09004 * 109.46852 * 119.99766 * 2 1 3 34 34 H 1.07997 * 120.00336 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.99825 * 179.97438 * 5 4 3 36 36 H 1.08992 * 109.46251 * 58.63436 * 9 7 6 37 37 H 1.09002 * 109.45013 * 298.66556 * 9 7 6 38 38 H 1.08997 * 109.49915 * 181.31170 * 10 9 7 39 39 H 1.08999 * 109.49407 * 301.41552 * 10 9 7 40 40 H 1.09001 * 109.58307 * 65.15377 * 11 10 9 41 41 H 1.08998 * 109.58449 * 185.57737 * 11 10 9 42 42 H 0.96995 * 119.99500 * 4.97566 * 15 13 12 43 43 H 1.08998 * 109.47177 * 299.99582 * 16 15 13 44 44 H 1.08996 * 109.47073 * 59.99741 * 16 15 13 45 45 H 1.08999 * 109.47626 * 299.99754 * 17 16 15 46 46 H 1.09005 * 109.47207 * 60.00067 * 17 16 15 47 47 H 0.97000 * 120.00175 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.58526 * 186.60177 * 26 12 11 49 49 H 1.08993 * 109.70375 * 66.24824 * 26 12 11 50 50 H 1.07998 * 119.99281 * 179.73004 * 27 6 5 51 51 H 1.07997 * 120.00362 * 180.23414 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9553 4.0269 0.0000 7 6 3.4576 5.4478 0.0001 8 1 3.5790 5.7907 1.0275 9 6 2.4506 6.3455 -0.7224 10 6 2.9434 7.7941 -0.6937 11 6 4.2861 7.8870 -1.4254 12 7 5.2179 6.9205 -0.8284 13 6 6.4277 7.3165 -0.3857 14 8 7.1517 6.5284 0.1916 15 7 6.8350 8.5862 -0.5826 16 6 8.1907 8.9882 -0.1997 17 6 8.3954 10.4685 -0.5281 18 6 9.7898 10.8823 -0.1337 19 1 10.4628 10.1615 0.3067 20 6 10.2064 12.1812 -0.3350 21 7 9.3867 13.0590 -0.8708 22 14 11.9350 12.6939 0.1532 23 1 12.9237 11.8795 -0.5981 24 1 12.1333 14.1309 -0.1642 25 1 12.1221 12.4790 1.6107 26 6 4.8060 5.5141 -0.7238 27 6 2.7202 3.3769 -1.1971 28 6 2.2627 2.0725 -1.1971 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.0831 1.5632 2.1325 35 1 2.9035 3.8849 2.1325 36 1 1.4835 6.2811 -0.2238 37 1 2.3484 6.0172 -1.7568 38 1 2.2146 8.4363 -1.1880 39 1 3.0697 8.1149 0.3403 40 1 4.1440 7.6537 -2.4807 41 1 4.6892 8.8946 -1.3229 42 1 6.2304 9.2336 -0.9778 43 1 8.3280 8.8306 0.8700 44 1 8.9163 8.3904 -0.7512 45 1 8.2583 10.6258 -1.5979 46 1 7.6697 11.0667 0.0231 47 1 9.6798 13.9727 -1.0128 48 1 5.5522 4.9559 -0.1583 49 1 4.7070 5.0850 -1.7209 50 1 2.8968 3.8873 -2.1324 51 1 2.0825 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367863466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:48 Heat of formation + Delta-G solvation = -30.583018 kcal Electronic energy + Delta-G solvation = -27508.838944 eV Core-core repulsion = 23792.774088 eV Total energy + Delta-G solvation = -3716.064856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.52062 -39.57654 -37.54135 -34.92099 -34.82571 -33.03733 -32.50788 -31.59342 -31.15464 -29.57881 -28.39898 -25.64073 -24.77212 -24.04874 -23.07662 -22.72470 -21.42021 -20.96526 -20.24523 -19.25689 -17.92299 -16.53416 -16.43063 -15.99637 -15.65685 -15.52163 -15.10501 -14.65078 -14.50553 -14.31761 -14.17619 -13.94910 -13.87027 -13.66325 -13.61838 -13.40717 -13.22475 -12.91515 -12.67689 -12.27294 -12.21373 -12.10649 -11.73154 -11.46397 -11.34395 -11.20982 -11.12621 -11.02464 -10.95455 -10.80828 -10.63375 -10.61588 -10.28954 -9.84994 -9.51600 -9.25583 -9.12795 -8.83470 -8.62140 -8.42699 -8.14027 -6.07476 -4.10002 1.09572 1.19664 2.92024 3.32841 3.36388 3.40166 3.49723 3.58595 4.22597 4.37824 4.45326 4.46695 4.53977 4.65004 4.70771 4.79211 4.87442 4.91754 4.98324 4.99948 5.15537 5.19982 5.25273 5.28180 5.29566 5.36814 5.44410 5.52643 5.58654 5.63722 5.68247 5.69543 5.75919 5.82220 5.86623 5.89862 5.96641 6.11320 6.20617 6.30142 6.38360 6.42649 6.45922 6.62445 6.79497 6.80120 7.03364 7.21240 7.57570 7.65107 7.91545 8.27029 8.40420 8.94229 9.01437 9.54548 11.04144 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031493 B = 0.001849 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.878410 B =15136.638321 C =15635.417773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.075 4.075 7 C -0.064 4.064 8 H 0.082 0.918 9 C -0.107 4.107 10 C -0.135 4.135 11 C 0.110 3.890 12 N -0.635 5.635 13 C 0.703 3.297 14 O -0.596 6.596 15 N -0.739 5.739 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.141 3.859 27 C -0.110 4.110 28 C -0.116 4.116 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.392 0.608 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.262 0.738 48 H 0.094 0.906 49 H 0.062 0.938 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.260 -21.208 -1.319 30.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.075 4.075 7 C -0.083 4.083 8 H 0.101 0.899 9 C -0.145 4.145 10 C -0.174 4.174 11 C -0.014 4.014 12 N -0.373 5.373 13 C 0.404 3.596 14 O -0.475 6.475 15 N -0.394 5.394 16 C 0.016 3.984 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 C 0.017 3.983 27 C -0.128 4.128 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.228 0.772 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.112 0.888 49 H 0.081 0.919 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.669 -21.565 -0.959 30.586 hybrid contribution 0.565 0.789 0.036 0.971 sum -21.103 -20.776 -0.924 29.628 Atomic orbital electron populations 1.21747 0.94783 1.01619 1.02208 1.20540 0.96124 0.92803 1.02794 1.19879 0.99485 0.96199 0.93269 1.20995 1.00108 0.94848 0.97478 1.21085 0.99275 0.94777 0.97644 1.19738 0.99148 0.95370 0.93258 1.20562 0.95222 0.91269 1.01252 0.89922 1.21557 0.98039 0.94228 1.00664 1.21939 0.96712 0.96953 1.01773 1.21624 0.89635 0.93071 0.97032 1.47256 1.15494 1.08965 1.65606 1.15969 0.81107 0.83170 0.79353 1.90875 1.55242 1.53657 1.47695 1.45710 1.17555 1.09134 1.67046 1.21596 0.79022 0.98535 0.99232 1.19318 0.97696 0.87987 0.97414 1.21020 0.98003 0.95552 1.41400 0.92267 1.24989 0.97685 0.96544 0.95039 1.69946 1.35651 1.03936 1.43819 0.86566 0.84426 0.77369 0.79132 1.20120 1.21265 1.20121 1.21394 0.95174 0.81641 1.00068 1.20986 0.99449 0.94695 0.97670 1.20986 1.00168 0.94858 0.97435 0.92580 0.92480 0.92581 0.91110 0.91122 0.86279 0.86068 0.91617 0.91574 0.90489 0.91248 0.91448 0.90019 0.77222 0.92737 0.92864 0.96009 0.96011 0.92837 0.88785 0.91947 0.86056 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.43 16 2 C -0.09 -0.53 6.06 -27.88 -0.17 -0.70 16 3 C -0.09 -0.72 5.13 -104.62 -0.54 -1.26 16 4 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 5 C -0.11 -1.03 9.67 -39.58 -0.38 -1.41 16 6 C -0.07 -0.71 4.79 -104.62 -0.50 -1.21 16 7 C -0.06 -0.63 2.51 -91.65 -0.23 -0.86 16 8 H 0.08 0.91 7.88 -51.93 -0.41 0.50 16 9 C -0.11 -0.89 4.96 -26.69 -0.13 -1.02 16 10 C -0.14 -1.17 6.08 -26.61 -0.16 -1.33 16 11 C 0.11 1.15 6.39 -3.71 -0.02 1.13 16 12 N -0.63 -8.81 2.97 -178.50 -0.53 -9.34 16 13 C 0.70 12.98 8.29 -86.92 -0.72 12.26 16 14 O -0.60 -13.30 15.77 5.29 0.08 -13.21 16 15 N -0.74 -13.69 5.47 -65.23 -0.36 -14.04 16 16 C 0.14 3.07 5.62 -4.04 -0.02 3.05 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 19 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 22 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.14 1.72 5.62 -3.71 -0.02 1.70 16 27 C -0.11 -0.96 8.67 -39.58 -0.34 -1.31 16 28 C -0.12 -0.96 9.70 -39.58 -0.38 -1.35 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 1.03 7.95 -52.49 -0.42 0.62 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.50 7.42 -51.93 -0.39 0.12 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.87 5.65 -51.93 -0.29 0.57 16 42 H 0.39 6.32 5.96 -40.82 -0.24 6.08 16 43 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 48 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 49 H 0.06 0.68 7.24 -51.93 -0.38 0.30 16 50 H 0.12 0.92 7.09 -52.49 -0.37 0.55 16 51 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 405.17 15.07 6.11 6.11 Total: -1.00 -32.60 405.17 -11.92 -44.51 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -8.74 Total: 2.20 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -4.20 Total: -7.28 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.15 Total: -48.83 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.60 -11.92 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367863466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.931 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds