Wall clock time and date at job start Tue Mar 31 2020 16:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46970 * 2 1 4 4 C 1.38236 * 119.99760 * 89.99921 * 3 2 1 5 5 C 1.38241 * 119.99869 * 179.97438 * 4 3 2 6 6 C 1.38242 * 119.99763 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99514 * 179.97438 * 6 5 4 8 8 H 1.08992 * 109.49947 * 0.05799 * 7 6 5 9 9 C 1.53039 * 109.49283 * 239.99623 * 7 6 5 10 10 C 1.53044 * 109.53815 * 178.65365 * 9 7 6 11 11 C 1.53197 * 109.31117 * 61.36312 * 10 9 7 12 12 N 1.46927 * 108.77389 * 305.36820 * 11 10 9 13 13 C 1.34774 * 120.62771 * 233.58084 * 12 11 10 14 14 O 1.21591 * 119.99961 * 174.79146 * 13 12 11 15 15 N 1.34782 * 120.00316 * 354.80189 * 13 12 11 16 16 C 1.46500 * 120.00038 * 184.97833 * 15 13 12 17 17 C 1.52998 * 109.46772 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47073 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99950 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00165 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99763 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99948 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47545 * 59.99852 * 22 20 18 24 24 H 1.48498 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47319 * 299.99692 * 22 20 18 26 26 C 1.46926 * 118.73969 * 53.61026 * 12 11 10 27 27 C 1.38237 * 119.99809 * 0.26768 * 6 5 4 28 28 C 1.38231 * 120.00212 * 359.54352 * 27 6 5 29 29 H 1.09004 * 109.46852 * 60.00234 * 1 2 3 30 30 H 1.09001 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46993 * 300.00244 * 1 2 3 32 32 H 1.09000 * 109.47241 * 240.00210 * 2 1 3 33 33 H 1.09004 * 109.46852 * 119.99766 * 2 1 3 34 34 H 1.07997 * 120.00336 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.99825 * 179.97438 * 5 4 3 36 36 H 1.08992 * 109.46251 * 58.63436 * 9 7 6 37 37 H 1.09002 * 109.45013 * 298.66556 * 9 7 6 38 38 H 1.08997 * 109.49915 * 181.31170 * 10 9 7 39 39 H 1.08999 * 109.49407 * 301.41552 * 10 9 7 40 40 H 1.09001 * 109.58307 * 65.15377 * 11 10 9 41 41 H 1.08998 * 109.58449 * 185.57737 * 11 10 9 42 42 H 0.96995 * 119.99500 * 4.97566 * 15 13 12 43 43 H 1.08998 * 109.47177 * 299.99582 * 16 15 13 44 44 H 1.08996 * 109.47073 * 59.99741 * 16 15 13 45 45 H 1.08999 * 109.47626 * 299.99754 * 17 16 15 46 46 H 1.09005 * 109.47207 * 60.00067 * 17 16 15 47 47 H 0.97000 * 120.00175 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.58526 * 186.60177 * 26 12 11 49 49 H 1.08993 * 109.70375 * 66.24824 * 26 12 11 50 50 H 1.07998 * 119.99281 * 179.73004 * 27 6 5 51 51 H 1.07997 * 120.00362 * 180.23414 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9553 4.0269 0.0000 7 6 3.4576 5.4478 0.0001 8 1 3.5790 5.7907 1.0275 9 6 2.4506 6.3455 -0.7224 10 6 2.9434 7.7941 -0.6937 11 6 4.2861 7.8870 -1.4254 12 7 5.2179 6.9205 -0.8284 13 6 6.4277 7.3165 -0.3857 14 8 7.1517 6.5284 0.1916 15 7 6.8350 8.5862 -0.5826 16 6 8.1907 8.9882 -0.1997 17 6 8.3954 10.4685 -0.5281 18 6 9.7898 10.8823 -0.1337 19 1 10.4628 10.1615 0.3067 20 6 10.2064 12.1812 -0.3350 21 7 9.3867 13.0590 -0.8708 22 14 11.9350 12.6939 0.1532 23 1 12.9237 11.8795 -0.5981 24 1 12.1333 14.1309 -0.1642 25 1 12.1221 12.4790 1.6107 26 6 4.8060 5.5141 -0.7238 27 6 2.7202 3.3769 -1.1971 28 6 2.2627 2.0725 -1.1971 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.0831 1.5632 2.1325 35 1 2.9035 3.8849 2.1325 36 1 1.4835 6.2811 -0.2238 37 1 2.3484 6.0172 -1.7568 38 1 2.2146 8.4363 -1.1880 39 1 3.0697 8.1149 0.3403 40 1 4.1440 7.6537 -2.4807 41 1 4.6892 8.8946 -1.3229 42 1 6.2304 9.2336 -0.9778 43 1 8.3280 8.8306 0.8700 44 1 8.9163 8.3904 -0.7512 45 1 8.2583 10.6258 -1.5979 46 1 7.6697 11.0667 0.0231 47 1 9.6798 13.9727 -1.0128 48 1 5.5522 4.9559 -0.1583 49 1 4.7070 5.0850 -1.7209 50 1 2.8968 3.8873 -2.1324 51 1 2.0825 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367863466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:47 Heat of formation + Delta-G solvation = -47.192872 kcal Electronic energy + Delta-G solvation = -27509.559201 eV Core-core repulsion = 23792.774088 eV Total energy + Delta-G solvation = -3716.785113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60882 -40.49723 -38.58593 -36.62758 -35.67969 -34.80332 -33.62500 -32.42093 -31.79697 -31.35652 -29.17550 -27.13296 -25.88701 -25.17579 -23.72617 -23.44997 -22.97704 -22.12800 -21.18843 -20.38879 -19.15735 -18.49122 -17.32528 -17.14504 -16.75742 -16.50908 -16.44800 -16.03181 -15.45700 -15.32740 -15.29130 -15.15770 -14.67877 -14.64560 -14.47863 -14.28621 -14.14339 -14.03396 -13.95303 -13.63734 -13.22883 -12.92821 -12.87659 -12.72392 -12.53344 -12.41523 -12.24787 -12.08944 -11.96919 -11.86576 -11.72486 -11.65666 -11.56668 -11.44913 -11.36248 -11.10889 -10.59643 -10.18696 -9.78654 -9.58125 -9.28268 -8.23440 -6.33820 0.42895 0.53784 1.42166 1.44727 1.52341 1.65769 2.10191 2.41255 2.85091 2.99059 3.11198 3.63606 3.76563 3.89435 3.94017 4.03795 4.08216 4.15870 4.18139 4.30977 4.37482 4.44348 4.50376 4.53473 4.54546 4.58861 4.63824 4.72923 4.73539 4.80239 4.84668 4.87022 4.96446 5.07150 5.08439 5.10695 5.17568 5.19915 5.25506 5.30496 5.39422 5.39617 5.48626 5.52019 5.58424 5.61023 5.75038 5.76819 5.78813 5.93578 6.15478 6.17237 6.78379 6.97395 7.35232 7.53941 8.88191 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031493 B = 0.001849 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.878410 B =15136.638321 C =15635.417773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.086 4.086 7 C -0.053 4.053 8 H 0.065 0.935 9 C -0.101 4.101 10 C -0.129 4.129 11 C 0.102 3.898 12 N -0.626 5.626 13 C 0.698 3.302 14 O -0.640 6.640 15 N -0.734 5.734 16 C 0.159 3.841 17 C 0.025 3.975 18 C -0.549 4.549 19 H 0.058 0.942 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.270 1.270 26 C 0.140 3.860 27 C -0.114 4.114 28 C -0.123 4.123 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.405 0.595 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.010 0.990 46 H 0.008 0.992 47 H 0.266 0.734 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.135 0.865 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.520 -21.864 -2.295 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.087 4.087 7 C -0.072 4.072 8 H 0.083 0.917 9 C -0.139 4.139 10 C -0.168 4.168 11 C -0.020 4.020 12 N -0.363 5.363 13 C 0.400 3.600 14 O -0.523 6.523 15 N -0.391 5.391 16 C 0.035 3.965 17 C -0.012 4.012 18 C -0.587 4.587 19 H 0.076 0.924 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.195 1.195 26 C 0.017 3.983 27 C -0.132 4.132 28 C -0.141 4.141 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.243 0.757 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.028 0.972 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.153 0.847 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.996 -22.224 -1.959 32.040 hybrid contribution 0.879 0.930 0.326 1.320 sum -22.117 -21.295 -1.633 30.745 Atomic orbital electron populations 1.21725 0.94177 1.02313 1.01885 1.20583 0.96570 0.91615 1.03433 1.20176 0.98837 0.97153 0.93101 1.21202 1.00070 0.94667 0.98422 1.21229 0.99926 0.95419 0.97807 1.19731 1.00029 0.95149 0.93793 1.20413 0.94381 0.92308 1.00135 0.91693 1.21542 0.97629 0.93348 1.01364 1.21920 0.96071 0.97772 1.00993 1.21950 0.89645 0.92006 0.98404 1.47316 1.14303 1.10315 1.64329 1.16114 0.82227 0.82470 0.79236 1.90841 1.57058 1.54662 1.49697 1.45409 1.16513 1.09825 1.67326 1.21087 0.80799 0.96428 0.98164 1.19115 0.96379 0.89520 0.96197 1.21428 0.99304 0.96122 1.41869 0.92376 1.25850 1.01897 0.96466 0.94783 1.70047 1.37563 1.04332 1.44460 0.85498 0.79323 0.77226 0.78994 1.19371 1.20454 1.19461 1.21508 0.95510 0.80281 1.00972 1.21164 0.99215 0.95059 0.97772 1.21262 0.99738 0.94813 0.98272 0.92739 0.91299 0.93059 0.90304 0.90687 0.85121 0.86169 0.90719 0.90005 0.87821 0.92630 0.89029 0.90311 0.75730 0.94064 0.93867 0.97187 0.97348 0.92524 0.91888 0.89965 0.84723 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.89 71.98 0.71 -0.61 16 2 C -0.08 -0.90 6.06 29.85 0.18 -0.72 16 3 C -0.09 -1.39 5.13 -19.87 -0.10 -1.49 16 4 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 5 C -0.13 -2.35 9.67 22.27 0.22 -2.14 16 6 C -0.09 -1.59 4.79 -19.86 -0.10 -1.68 16 7 C -0.05 -1.02 2.51 -11.46 -0.03 -1.05 16 8 H 0.06 1.47 7.88 -2.39 -0.02 1.45 16 9 C -0.10 -1.45 4.96 30.62 0.15 -1.30 16 10 C -0.13 -1.95 6.08 30.67 0.19 -1.77 16 11 C 0.10 1.95 6.39 86.36 0.55 2.50 16 12 N -0.63 -17.11 2.97 -836.91 -2.49 -19.60 16 13 C 0.70 26.26 8.29 179.05 1.49 27.74 16 14 O -0.64 -29.61 15.77 -4.00 -0.06 -29.67 16 15 N -0.73 -27.60 5.47 -478.53 -2.62 -30.22 16 16 C 0.16 7.24 5.62 86.38 0.49 7.72 16 17 C 0.03 1.31 5.09 29.85 0.15 1.46 16 18 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 19 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 20 C 0.01 0.51 5.46 84.66 0.46 0.97 16 21 N -0.92 -54.28 13.29 21.45 0.28 -53.99 16 22 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.14 3.39 5.62 86.36 0.48 3.88 16 27 C -0.11 -1.81 8.67 22.27 0.19 -1.62 16 28 C -0.12 -1.81 9.70 22.27 0.22 -1.60 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 33 H 0.07 0.73 8.09 -2.38 -0.02 0.71 16 34 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.12 2.15 7.95 -2.91 -0.02 2.13 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 0.96 7.42 -2.39 -0.02 0.94 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.57 5.65 -2.39 -0.01 1.55 16 42 H 0.40 13.05 5.96 -92.71 -0.55 12.49 16 43 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 48 H 0.06 1.94 7.00 -2.39 -0.02 1.92 16 49 H 0.08 1.67 7.24 -2.39 -0.02 1.65 16 50 H 0.13 1.70 7.09 -2.91 -0.02 1.68 16 51 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -70.91 405.17 3.19 -67.72 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.35 Total: 22.25 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.70 Total: -2.46 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -4.82 Total: -103.81 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.06 Total: -29.67 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.91 3.19 -67.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367863466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.524 kcal (2) G-P(sol) polarization free energy of solvation -70.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds