Wall clock time and date at job start Tue Mar 31 2020 16:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.99405 * 2 1 4 4 C 1.54321 * 109.88422 * 121.09324 * 2 1 3 5 5 H 1.08999 * 110.71607 * 23.06829 * 4 2 1 6 6 C 1.50701 * 110.72137 * 259.97848 * 4 2 1 7 7 C 1.38236 * 120.00397 * 105.05795 * 6 4 2 8 8 C 1.38233 * 120.00249 * 180.25916 * 7 6 4 9 9 C 1.38236 * 119.99833 * 359.50749 * 8 7 6 10 10 C 1.38241 * 120.00018 * 0.27844 * 9 8 7 11 11 C 1.38230 * 119.99725 * 359.95990 * 10 9 8 12 12 C 1.55145 * 103.10307 * 141.52266 * 4 2 1 13 13 C 1.54911 * 101.58624 * 324.58922 * 12 4 2 14 14 N 1.47312 * 110.06499 * 238.82878 * 2 1 3 15 15 C 1.34778 * 125.61984 * 61.67547 * 14 2 1 16 16 O 1.21597 * 119.99496 * 0.20423 * 15 14 2 17 17 N 1.34774 * 120.00422 * 180.20161 * 15 14 2 18 18 C 1.46500 * 119.99906 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46910 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47028 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47244 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99644 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00280 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00312 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 119.99980 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47119 * 90.00150 * 25 23 21 27 27 H 1.48504 * 109.47517 * 210.00019 * 25 23 21 28 28 H 1.48501 * 109.47210 * 330.00416 * 25 23 21 29 29 H 1.09007 * 109.47463 * 298.90789 * 1 2 3 30 30 H 1.09004 * 109.47310 * 58.90131 * 1 2 3 31 31 H 1.09000 * 109.47221 * 178.90412 * 1 2 3 32 32 H 1.09000 * 109.46892 * 184.42840 * 3 2 1 33 33 H 1.08999 * 109.47371 * 304.42247 * 3 2 1 34 34 H 1.09001 * 109.47346 * 64.42991 * 3 2 1 35 35 H 1.08002 * 119.99620 * 0.03745 * 7 6 4 36 36 H 1.07999 * 120.00589 * 179.78148 * 8 7 6 37 37 H 1.08000 * 120.00167 * 180.25962 * 9 8 7 38 38 H 1.08003 * 119.99735 * 179.97438 * 10 9 8 39 39 H 1.08004 * 119.99767 * 180.02562 * 11 10 9 40 40 H 1.09005 * 111.00321 * 82.66310 * 12 4 2 41 41 H 1.09003 * 111.00553 * 206.47648 * 12 4 2 42 42 H 1.08999 * 110.37163 * 155.84366 * 13 12 4 43 43 H 1.09003 * 110.36167 * 278.17664 * 13 12 4 44 44 H 0.96999 * 119.99892 * 359.97438 * 17 15 14 45 45 H 1.09001 * 109.47258 * 299.99755 * 18 17 15 46 46 H 1.08999 * 109.47361 * 60.00483 * 18 17 15 47 47 H 1.08994 * 109.47231 * 300.00402 * 19 18 17 48 48 H 1.09001 * 109.47014 * 60.00452 * 19 18 17 49 49 H 1.09001 * 109.47245 * 300.00006 * 20 19 18 50 50 H 1.08999 * 109.47256 * 60.00661 * 20 19 18 51 51 H 0.97002 * 120.00284 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 6 2.0549 -0.7494 1.2427 5 1 1.3039 -1.4435 1.6201 6 6 2.4669 0.2233 2.3175 7 6 1.6663 0.4044 3.4298 8 6 2.0416 1.3006 4.4130 9 6 3.2226 2.0082 4.2889 10 6 4.0254 1.8239 3.1787 11 6 3.6476 0.9314 2.1931 12 6 3.2869 -1.5176 0.6959 13 6 2.8162 -1.8830 -0.7340 14 7 2.0354 -0.7162 -1.1839 15 6 1.8164 -0.3649 -2.4666 16 8 1.1537 0.6221 -2.7219 17 7 2.3320 -1.1076 -3.4661 18 6 2.0944 -0.7253 -4.8603 19 6 2.7844 -1.7270 -5.7884 20 6 2.5357 -1.3282 -7.2444 21 6 3.2149 -2.3152 -8.1586 22 1 3.7682 -3.1442 -7.7426 23 6 3.1299 -2.1598 -9.5259 24 7 3.7222 -3.0214 -10.3237 25 14 2.1724 -0.7264 -10.2453 26 1 3.0789 0.4370 -10.4190 27 1 1.6111 -1.1176 -11.5633 28 1 1.0660 -0.3587 -9.3255 29 1 -0.3634 0.4968 0.8996 30 1 -0.3634 0.5308 -0.8800 31 1 -0.3633 -1.0275 -0.0197 32 1 3.1402 1.4289 -0.0793 33 1 1.6315 1.9779 -0.8477 34 1 1.7606 1.9310 0.9270 35 1 0.7458 -0.1518 3.5288 36 1 1.4144 1.4447 5.2803 37 1 3.5179 2.7054 5.0591 38 1 4.9479 2.3772 3.0816 39 1 4.2750 0.7870 1.3260 40 1 4.1664 -0.8743 0.6652 41 1 3.4815 -2.4140 1.2848 42 1 3.6743 -2.0400 -1.3875 43 1 2.1880 -2.7736 -0.7106 44 1 2.8610 -1.8947 -3.2624 45 1 1.0226 -0.7240 -5.0591 46 1 2.4981 0.2714 -5.0377 47 1 3.8561 -1.7281 -5.5895 48 1 2.3810 -2.7240 -5.6112 49 1 1.4640 -1.3276 -7.4430 50 1 2.9388 -0.3312 -7.4220 51 1 3.6627 -2.9119 -11.2857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422152593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:29 Heat of formation + Delta-G solvation = -11.257894 kcal Electronic energy + Delta-G solvation = -28309.300610 eV Core-core repulsion = 24594.073754 eV Total energy + Delta-G solvation = -3715.226856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18097 -39.51621 -37.81761 -35.43464 -33.77814 -32.98460 -32.39804 -31.35651 -31.28440 -29.77532 -27.40829 -26.97402 -25.89984 -23.46120 -23.14613 -22.42557 -22.01691 -20.58199 -20.22792 -18.94893 -17.53229 -17.22747 -16.77389 -16.36746 -15.66689 -15.53977 -15.37731 -14.95718 -14.52998 -14.37318 -14.11641 -13.97681 -13.74448 -13.56673 -13.50713 -13.24256 -12.86186 -12.74245 -12.68097 -12.27041 -12.06553 -11.99875 -11.91161 -11.76625 -11.58936 -11.38425 -11.14670 -11.03375 -10.94805 -10.87589 -10.85526 -10.15627 -9.95195 -9.78015 -9.63832 -9.21975 -9.21635 -8.96994 -8.93269 -8.54768 -8.50268 -6.05523 -4.04095 0.99601 1.07617 2.60411 3.32304 3.33920 3.39773 3.41319 3.44598 4.00779 4.14083 4.24088 4.41103 4.45450 4.59399 4.65859 4.77646 4.83003 4.85348 4.92351 5.00929 5.13935 5.24872 5.28692 5.29254 5.35597 5.42056 5.55682 5.55936 5.61879 5.65225 5.68572 5.71443 5.74194 5.79341 5.84911 6.06205 6.09291 6.13869 6.19512 6.23023 6.29662 6.33613 6.47275 6.48960 6.66305 6.75049 6.85994 7.11987 7.25008 7.38269 7.76711 8.09915 8.51072 8.75219 8.98251 9.56850 11.07661 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.002038 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.845519 B =13735.207165 C =13891.989601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.193 3.807 3 C -0.156 4.156 4 C -0.056 4.056 5 H 0.094 0.906 6 C -0.064 4.064 7 C -0.116 4.116 8 C -0.120 4.120 9 C -0.124 4.124 10 C -0.120 4.120 11 C -0.109 4.109 12 C -0.126 4.126 13 C 0.098 3.902 14 N -0.633 5.633 15 C 0.721 3.279 16 O -0.587 6.587 17 N -0.741 5.741 18 C 0.134 3.866 19 C -0.112 4.112 20 C -0.011 4.011 21 C -0.521 4.521 22 H 0.072 0.928 23 C 0.066 3.934 24 N -0.903 5.903 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.264 1.264 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.394 0.606 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.019 0.981 50 H 0.014 0.986 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.812 5.792 33.204 33.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 C -0.214 4.214 4 C -0.075 4.075 5 H 0.112 0.888 6 C -0.064 4.064 7 C -0.134 4.134 8 C -0.138 4.138 9 C -0.142 4.142 10 C -0.138 4.138 11 C -0.127 4.127 12 C -0.164 4.164 13 C -0.026 4.026 14 N -0.373 5.373 15 C 0.423 3.577 16 O -0.465 6.465 17 N -0.396 5.396 18 C 0.010 3.990 19 C -0.150 4.150 20 C -0.049 4.049 21 C -0.559 4.559 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.542 5.542 25 Si 0.707 3.293 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.189 1.189 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.227 0.773 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.037 0.963 50 H 0.033 0.967 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.301 6.509 32.681 33.402 hybrid contribution -0.117 0.228 -0.440 0.509 sum -2.417 6.737 32.241 33.026 Atomic orbital electron populations 1.22158 0.94102 1.02119 1.03051 1.20680 0.93894 0.92136 0.82527 1.22338 1.01089 0.95291 1.02697 1.21292 0.98068 0.95602 0.92496 0.88808 1.19512 0.94876 0.97299 0.94739 1.21033 0.99520 0.98940 0.93877 1.21120 0.96906 0.96757 0.99004 1.21154 0.95078 0.99856 0.98129 1.21151 0.99847 0.98585 0.94241 1.21148 0.96481 0.96346 0.98708 1.22936 0.97583 1.00901 0.95003 1.22273 0.95451 0.89252 0.95610 1.47789 1.56370 1.29381 1.03723 1.15482 0.80151 0.82934 0.79136 1.90889 1.44859 1.28311 1.82406 1.45374 1.57200 1.30895 1.06090 1.21501 1.00701 0.99212 0.77548 1.21699 0.99634 0.97522 0.96183 1.19500 0.97161 0.97067 0.91157 1.21097 1.32868 1.11380 0.90577 0.91033 1.25028 0.95164 0.96134 0.97193 1.69913 1.44171 1.36416 1.03723 0.86776 0.81041 0.82960 0.78528 1.20246 1.21384 1.18868 0.91986 0.90675 0.92664 0.92462 0.91016 0.91760 0.86094 0.86175 0.86287 0.86125 0.85776 0.89992 0.89539 0.90614 0.91352 0.77257 0.92008 0.92044 0.92226 0.92186 0.96282 0.96721 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.42 37.16 0.31 -1.35 16 2 C 0.19 1.97 0.77 -130.68 -0.10 1.87 16 3 C -0.16 -1.74 6.98 37.16 0.26 -1.48 16 4 C -0.06 -0.41 2.64 -89.94 -0.24 -0.65 16 5 H 0.09 0.62 7.75 -51.93 -0.40 0.22 16 6 C -0.06 -0.48 3.62 -104.62 -0.38 -0.86 16 7 C -0.12 -0.81 9.69 -39.58 -0.38 -1.19 16 8 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 9 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 10 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 11 C -0.11 -0.83 6.78 -39.58 -0.27 -1.10 16 12 C -0.13 -0.83 6.39 -24.59 -0.16 -0.98 16 13 C 0.10 0.79 6.57 -2.53 -0.02 0.77 16 14 N -0.63 -7.31 2.83 -161.23 -0.46 -7.77 16 15 C 0.72 11.07 8.07 -86.92 -0.70 10.37 16 16 O -0.59 -11.11 14.06 5.28 0.07 -11.03 16 17 N -0.74 -10.80 5.52 -65.22 -0.36 -11.16 16 18 C 0.13 2.29 5.67 -4.04 -0.02 2.27 16 19 C -0.11 -2.12 5.27 -26.73 -0.14 -2.27 16 20 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 21 C -0.52 -14.75 9.66 -34.44 -0.33 -15.09 16 22 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 23 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 24 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 25 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.02 6.93 -51.93 -0.36 0.66 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.62 6.31 -51.93 -0.33 0.29 16 33 H 0.07 1.01 6.89 -51.93 -0.36 0.65 16 34 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 35 H 0.12 0.68 8.05 -52.49 -0.42 0.25 16 36 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 39 H 0.12 0.91 5.33 -52.48 -0.28 0.63 16 40 H 0.08 0.54 5.93 -51.93 -0.31 0.24 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.57 7.30 -51.93 -0.38 0.19 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.39 4.75 6.95 -40.82 -0.28 4.47 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 50 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 51 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -33.49 393.11 -10.75 -44.23 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.46 Total: 1.52 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -3.57 Total: -11.89 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.04 Total: -45.99 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.49 -10.75 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422152593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.977 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds