Wall clock time and date at job start Tue Mar 31 2020 16:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.99405 * 2 1 4 4 C 1.54321 * 109.88422 * 121.09324 * 2 1 3 5 5 H 1.08999 * 110.71607 * 23.06829 * 4 2 1 6 6 C 1.50701 * 110.72137 * 259.97848 * 4 2 1 7 7 C 1.38236 * 120.00397 * 105.05795 * 6 4 2 8 8 C 1.38233 * 120.00249 * 180.25916 * 7 6 4 9 9 C 1.38236 * 119.99833 * 359.50749 * 8 7 6 10 10 C 1.38241 * 120.00018 * 0.27844 * 9 8 7 11 11 C 1.38230 * 119.99725 * 359.95990 * 10 9 8 12 12 C 1.55145 * 103.10307 * 141.52266 * 4 2 1 13 13 C 1.54911 * 101.58624 * 324.58922 * 12 4 2 14 14 N 1.47312 * 110.06499 * 238.82878 * 2 1 3 15 15 C 1.34778 * 125.61984 * 61.67547 * 14 2 1 16 16 O 1.21597 * 119.99496 * 0.20423 * 15 14 2 17 17 N 1.34774 * 120.00422 * 180.20161 * 15 14 2 18 18 C 1.46500 * 119.99906 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46910 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47028 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47244 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99644 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00280 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00312 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 119.99980 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47119 * 90.00150 * 25 23 21 27 27 H 1.48504 * 109.47517 * 210.00019 * 25 23 21 28 28 H 1.48501 * 109.47210 * 330.00416 * 25 23 21 29 29 H 1.09007 * 109.47463 * 298.90789 * 1 2 3 30 30 H 1.09004 * 109.47310 * 58.90131 * 1 2 3 31 31 H 1.09000 * 109.47221 * 178.90412 * 1 2 3 32 32 H 1.09000 * 109.46892 * 184.42840 * 3 2 1 33 33 H 1.08999 * 109.47371 * 304.42247 * 3 2 1 34 34 H 1.09001 * 109.47346 * 64.42991 * 3 2 1 35 35 H 1.08002 * 119.99620 * 0.03745 * 7 6 4 36 36 H 1.07999 * 120.00589 * 179.78148 * 8 7 6 37 37 H 1.08000 * 120.00167 * 180.25962 * 9 8 7 38 38 H 1.08003 * 119.99735 * 179.97438 * 10 9 8 39 39 H 1.08004 * 119.99767 * 180.02562 * 11 10 9 40 40 H 1.09005 * 111.00321 * 82.66310 * 12 4 2 41 41 H 1.09003 * 111.00553 * 206.47648 * 12 4 2 42 42 H 1.08999 * 110.37163 * 155.84366 * 13 12 4 43 43 H 1.09003 * 110.36167 * 278.17664 * 13 12 4 44 44 H 0.96999 * 119.99892 * 359.97438 * 17 15 14 45 45 H 1.09001 * 109.47258 * 299.99755 * 18 17 15 46 46 H 1.08999 * 109.47361 * 60.00483 * 18 17 15 47 47 H 1.08994 * 109.47231 * 300.00402 * 19 18 17 48 48 H 1.09001 * 109.47014 * 60.00452 * 19 18 17 49 49 H 1.09001 * 109.47245 * 300.00006 * 20 19 18 50 50 H 1.08999 * 109.47256 * 60.00661 * 20 19 18 51 51 H 0.97002 * 120.00284 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 6 2.0549 -0.7494 1.2427 5 1 1.3039 -1.4435 1.6201 6 6 2.4669 0.2233 2.3175 7 6 1.6663 0.4044 3.4298 8 6 2.0416 1.3006 4.4130 9 6 3.2226 2.0082 4.2889 10 6 4.0254 1.8239 3.1787 11 6 3.6476 0.9314 2.1931 12 6 3.2869 -1.5176 0.6959 13 6 2.8162 -1.8830 -0.7340 14 7 2.0354 -0.7162 -1.1839 15 6 1.8164 -0.3649 -2.4666 16 8 1.1537 0.6221 -2.7219 17 7 2.3320 -1.1076 -3.4661 18 6 2.0944 -0.7253 -4.8603 19 6 2.7844 -1.7270 -5.7884 20 6 2.5357 -1.3282 -7.2444 21 6 3.2149 -2.3152 -8.1586 22 1 3.7682 -3.1442 -7.7426 23 6 3.1299 -2.1598 -9.5259 24 7 3.7222 -3.0214 -10.3237 25 14 2.1724 -0.7264 -10.2453 26 1 3.0789 0.4370 -10.4190 27 1 1.6111 -1.1176 -11.5633 28 1 1.0660 -0.3587 -9.3255 29 1 -0.3634 0.4968 0.8996 30 1 -0.3634 0.5308 -0.8800 31 1 -0.3633 -1.0275 -0.0197 32 1 3.1402 1.4289 -0.0793 33 1 1.6315 1.9779 -0.8477 34 1 1.7606 1.9310 0.9270 35 1 0.7458 -0.1518 3.5288 36 1 1.4144 1.4447 5.2803 37 1 3.5179 2.7054 5.0591 38 1 4.9479 2.3772 3.0816 39 1 4.2750 0.7870 1.3260 40 1 4.1664 -0.8743 0.6652 41 1 3.4815 -2.4140 1.2848 42 1 3.6743 -2.0400 -1.3875 43 1 2.1880 -2.7736 -0.7106 44 1 2.8610 -1.8947 -3.2624 45 1 1.0226 -0.7240 -5.0591 46 1 2.4981 0.2714 -5.0377 47 1 3.8561 -1.7281 -5.5895 48 1 2.3810 -2.7240 -5.6112 49 1 1.4640 -1.3276 -7.4430 50 1 2.9388 -0.3312 -7.4220 51 1 3.6627 -2.9119 -11.2857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422152593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:28 Heat of formation + Delta-G solvation = -30.110394 kcal Electronic energy + Delta-G solvation = -28310.118115 eV Core-core repulsion = 24594.073754 eV Total energy + Delta-G solvation = -3716.044362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98598 -40.36391 -38.65578 -36.91603 -35.25717 -34.28231 -33.22579 -32.89715 -31.82186 -30.59784 -28.69189 -28.23980 -26.58070 -24.88840 -23.87552 -23.04807 -22.96526 -22.19013 -21.10122 -20.01632 -18.94788 -18.40412 -17.77067 -17.28210 -16.87589 -16.46367 -16.20086 -16.05124 -15.85629 -15.49581 -15.21743 -14.91017 -14.77459 -14.57458 -14.33036 -14.19391 -13.99422 -13.79637 -13.73399 -13.49736 -13.37035 -12.95157 -12.79807 -12.73850 -12.71281 -12.52660 -12.29871 -12.01955 -11.90516 -11.80162 -11.74745 -11.59891 -11.59695 -11.45349 -11.32959 -11.05089 -10.76204 -10.18380 -9.72339 -9.50154 -9.48009 -8.29455 -6.33087 0.48084 0.57712 1.36546 1.38206 1.50139 1.58327 2.16498 2.36197 2.88926 3.02135 3.06196 3.52551 3.66904 3.67094 4.08106 4.08195 4.11547 4.17901 4.20643 4.21337 4.29328 4.33771 4.40250 4.50246 4.54421 4.64665 4.68836 4.70071 4.74622 4.82042 4.87565 4.89604 4.93111 4.96003 5.03306 5.06024 5.15035 5.20086 5.23730 5.24941 5.34411 5.40877 5.52734 5.54880 5.55695 5.65053 5.65610 5.70928 5.77645 6.09857 6.17974 6.27467 6.74499 7.02082 7.31601 7.59667 8.86789 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.002038 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.845519 B =13735.207165 C =13891.989601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.186 3.814 3 C -0.145 4.145 4 C -0.045 4.045 5 H 0.109 0.891 6 C -0.072 4.072 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.131 4.131 10 C -0.132 4.132 11 C -0.119 4.119 12 C -0.119 4.119 13 C 0.090 3.910 14 N -0.630 5.630 15 C 0.715 3.285 16 O -0.629 6.629 17 N -0.734 5.734 18 C 0.149 3.851 19 C -0.098 4.098 20 C -0.012 4.012 21 C -0.529 4.529 22 H 0.038 0.962 23 C 0.005 3.995 24 N -0.949 5.949 25 Si 0.946 3.054 26 H -0.267 1.267 27 H -0.284 1.284 28 H -0.249 1.249 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.407 0.593 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.020 0.980 50 H 0.019 0.981 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 6.002 35.631 36.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.102 3.898 3 C -0.203 4.203 4 C -0.064 4.064 5 H 0.127 0.873 6 C -0.073 4.073 7 C -0.140 4.140 8 C -0.145 4.145 9 C -0.149 4.149 10 C -0.150 4.150 11 C -0.137 4.137 12 C -0.157 4.157 13 C -0.032 4.032 14 N -0.368 5.368 15 C 0.417 3.583 16 O -0.510 6.510 17 N -0.390 5.390 18 C 0.024 3.976 19 C -0.136 4.136 20 C -0.050 4.050 21 C -0.567 4.567 22 H 0.057 0.943 23 C -0.192 4.192 24 N -0.590 5.590 25 Si 0.770 3.230 26 H -0.193 1.193 27 H -0.210 1.210 28 H -0.173 1.173 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.243 0.757 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.039 0.961 50 H 0.037 0.963 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.668 6.686 35.166 35.896 hybrid contribution 0.059 0.125 -1.099 1.108 sum -2.610 6.811 34.067 34.839 Atomic orbital electron populations 1.22105 0.94478 1.02204 1.02186 1.20858 0.93705 0.91916 0.83352 1.22224 1.00851 0.95837 1.01417 1.21225 0.98724 0.95475 0.90934 0.87290 1.19539 0.95076 0.97615 0.95046 1.21270 0.99945 0.99057 0.93706 1.21405 0.97092 0.96444 0.99551 1.21430 0.95090 1.00042 0.98355 1.21368 1.00496 0.98722 0.94412 1.21233 0.96785 0.96774 0.98914 1.22952 0.96985 1.01749 0.93970 1.22572 0.95610 0.88335 0.96719 1.47821 1.55968 1.30274 1.02692 1.15643 0.79908 0.82494 0.80283 1.90864 1.46648 1.30109 1.83358 1.45107 1.57441 1.31392 1.05034 1.21115 0.99713 0.98085 0.78658 1.21459 1.00187 0.98076 0.93830 1.19461 0.96518 0.95943 0.93053 1.21448 1.32432 1.11318 0.91539 0.94318 1.25967 0.96353 0.99092 0.97795 1.70054 1.46073 1.38667 1.04192 0.85715 0.80005 0.79402 0.77898 1.19258 1.20957 1.17271 0.90244 0.94226 0.91911 0.92375 0.94568 0.90964 0.84654 0.84460 0.84765 0.85172 0.85939 0.90119 0.87087 0.89848 0.89858 0.75665 0.92906 0.92906 0.91751 0.91750 0.96135 0.96259 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.42 71.98 0.61 -2.51 16 2 C 0.19 3.60 0.77 3.90 0.00 3.60 16 3 C -0.15 -3.22 6.98 71.98 0.50 -2.72 16 4 C -0.04 -0.55 2.64 -10.36 -0.03 -0.58 16 5 H 0.11 1.06 7.75 -2.39 -0.02 1.04 16 6 C -0.07 -0.93 3.62 -19.86 -0.07 -1.00 16 7 C -0.12 -1.41 9.69 22.27 0.22 -1.19 16 8 C -0.13 -1.39 10.05 22.27 0.22 -1.17 16 9 C -0.13 -1.51 10.05 22.27 0.22 -1.28 16 10 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 11 C -0.12 -1.63 6.78 22.27 0.15 -1.48 16 12 C -0.12 -1.21 6.39 31.98 0.20 -1.01 16 13 C 0.09 1.23 6.57 86.86 0.57 1.80 16 14 N -0.63 -13.85 2.83 -782.28 -2.21 -16.06 16 15 C 0.71 21.75 8.07 179.05 1.45 23.20 16 16 O -0.63 -24.37 14.06 -4.02 -0.06 -24.42 16 17 N -0.73 -20.72 5.52 -478.52 -2.64 -23.36 16 18 C 0.15 5.00 5.67 86.38 0.49 5.49 16 19 C -0.10 -3.61 5.27 30.59 0.16 -3.44 16 20 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 21 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 22 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 23 C 0.00 0.28 5.47 84.65 0.46 0.75 16 24 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 25 Si 0.95 44.87 27.47 68.60 1.88 46.76 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 29 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.04 1.10 6.93 -2.38 -0.02 1.08 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.24 6.31 -2.39 -0.02 1.23 16 33 H 0.04 1.05 6.89 -2.39 -0.02 1.04 16 34 H 0.07 1.44 6.53 -2.39 -0.02 1.43 16 35 H 0.14 1.11 8.05 -2.91 -0.02 1.08 16 36 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.13 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.13 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.12 1.64 5.33 -2.91 -0.02 1.63 16 40 H 0.08 0.88 5.93 -2.38 -0.01 0.86 16 41 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 1.04 7.30 -2.39 -0.02 1.02 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.41 9.16 6.95 -92.71 -0.64 8.52 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 47 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 50 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 51 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -74.00 393.11 3.24 -70.76 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.21 Total: 18.96 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 5.75 Total: -13.44 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -4.55 Total: -98.61 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Total: -74.00 3.24 -70.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422152593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.650 kcal (2) G-P(sol) polarization free energy of solvation -74.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds