Wall clock time and date at job start Tue Mar 31 2020 16:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53010 * 109.99603 * 2 1 4 4 C 1.54325 * 109.88479 * 121.09354 * 2 1 3 5 5 H 1.08999 * 110.72217 * 215.76838 * 4 2 1 6 6 C 1.50701 * 110.71826 * 338.86620 * 4 2 1 7 7 C 1.38241 * 119.99661 * 255.78104 * 6 4 2 8 8 C 1.38234 * 119.99632 * 180.02562 * 7 6 4 9 9 C 1.38238 * 120.00148 * 0.02562 * 8 7 6 10 10 C 1.38234 * 119.99641 * 0.25720 * 9 8 7 11 11 C 1.38228 * 120.00253 * 359.48556 * 10 9 8 12 12 C 1.55155 * 103.09772 * 97.31648 * 4 2 1 13 13 C 1.55122 * 101.48964 * 35.28142 * 12 4 2 14 14 N 1.47022 * 109.88520 * 238.90682 * 2 1 3 15 15 C 1.34776 * 125.64684 * 59.48145 * 14 2 1 16 16 O 1.21583 * 120.00199 * 0.02562 * 15 14 2 17 17 N 1.34779 * 119.99888 * 179.97438 * 15 14 2 18 18 C 1.46497 * 119.99904 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47167 * 180.02562 * 18 17 15 20 20 C 1.53002 * 109.47069 * 180.02562 * 19 18 17 21 21 C 1.50704 * 109.46682 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00151 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99732 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00182 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00038 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46854 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47050 * 119.99985 * 25 23 21 28 28 H 1.48501 * 109.47164 * 240.00010 * 25 23 21 29 29 H 1.09001 * 109.47424 * 295.90637 * 1 2 3 30 30 H 1.09001 * 109.47563 * 55.90739 * 1 2 3 31 31 H 1.08999 * 109.47286 * 175.90886 * 1 2 3 32 32 H 1.08998 * 109.46896 * 181.09408 * 3 2 1 33 33 H 1.09000 * 109.47075 * 301.09529 * 3 2 1 34 34 H 1.08997 * 109.47028 * 61.09720 * 3 2 1 35 35 H 1.08000 * 119.99726 * 0.02562 * 7 6 4 36 36 H 1.07995 * 119.99546 * 179.97438 * 8 7 6 37 37 H 1.07999 * 119.99632 * 179.97438 * 9 8 7 38 38 H 1.08007 * 119.99812 * 179.72748 * 10 9 8 39 39 H 1.08003 * 120.00331 * 180.23979 * 11 10 9 40 40 H 1.08999 * 111.00514 * 153.49289 * 12 4 2 41 41 H 1.08998 * 111.00378 * 277.33933 * 12 4 2 42 42 H 1.08997 * 110.42449 * 204.29364 * 13 12 4 43 43 H 1.09005 * 110.29989 * 82.08777 * 13 12 4 44 44 H 0.96994 * 120.00124 * 0.02562 * 17 15 14 45 45 H 1.09006 * 109.47297 * 300.00204 * 18 17 15 46 46 H 1.08999 * 109.47120 * 60.00785 * 18 17 15 47 47 H 1.08993 * 109.46893 * 300.00289 * 19 18 17 48 48 H 1.08999 * 109.46811 * 60.00166 * 19 18 17 49 49 H 1.08999 * 109.47074 * 299.99974 * 20 19 18 50 50 H 1.08999 * 109.47174 * 60.00382 * 20 19 18 51 51 H 0.97001 * 120.00239 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0532 1.4379 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.9639 -0.2812 1.6201 6 6 0.9998 -0.8041 2.3174 7 6 1.0943 0.0226 3.4214 8 6 0.1268 -0.0279 4.4074 9 6 -0.9348 -0.9055 4.2899 10 6 -1.0260 -1.7363 3.1888 11 6 -0.0615 -1.6820 2.2002 12 6 2.3554 -2.1700 0.6957 13 6 2.8568 -1.8497 -0.7369 14 7 2.0300 -0.7140 -1.1839 15 6 1.7742 -0.3852 -2.4657 16 8 1.0751 0.5769 -2.7186 17 7 2.2941 -1.1223 -3.4671 18 6 2.0165 -0.7646 -4.8604 19 6 2.7198 -1.7547 -5.7910 20 6 2.4303 -1.3807 -7.2461 21 6 3.1235 -2.3556 -8.1627 22 1 3.7121 -3.1611 -7.7488 23 6 3.0065 -2.2192 -9.5297 24 7 2.2902 -1.2381 -10.0337 25 14 3.8651 -3.4280 -10.6659 26 1 4.6010 -4.4317 -9.8557 27 1 2.8557 -4.1173 -11.5093 28 1 4.8208 -2.6965 -11.5358 29 1 -0.3634 0.4490 0.9244 30 1 -0.3634 0.5760 -0.8510 31 1 -0.3634 -1.0250 -0.0733 32 1 3.1429 1.4279 -0.0196 33 1 1.6786 1.9608 -0.8800 34 1 1.7106 1.9491 0.8996 35 1 1.9239 0.7079 3.5133 36 1 0.2008 0.6177 5.2700 37 1 -1.6904 -0.9452 5.0605 38 1 -1.8531 -2.4251 3.0991 39 1 -0.1348 -2.3284 1.3381 40 1 3.1316 -2.6591 1.2842 41 1 1.4502 -2.7764 0.6651 42 1 2.7088 -2.7079 -1.3924 43 1 3.9093 -1.5671 -0.7148 44 1 2.8521 -1.8896 -3.2654 45 1 0.9415 -0.8006 -5.0375 46 1 2.3836 0.2428 -5.0569 47 1 3.7946 -1.7190 -5.6140 48 1 2.3523 -2.7619 -5.5943 49 1 1.3554 -1.4160 -7.4234 50 1 2.7980 -0.3736 -7.4424 51 1 2.2075 -1.1423 -10.9954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422152596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:31 Heat of formation + Delta-G solvation = -14.737543 kcal Electronic energy + Delta-G solvation = -28252.727360 eV Core-core repulsion = 24537.349615 eV Total energy + Delta-G solvation = -3715.377745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14982 -39.47353 -37.76850 -35.31773 -33.72665 -32.99546 -32.36522 -31.31089 -31.07222 -29.66254 -27.36199 -26.57165 -25.85042 -23.50662 -23.18748 -22.40085 -22.07288 -20.58076 -20.25941 -18.89057 -17.45916 -17.20771 -16.52440 -16.20450 -15.56905 -15.49442 -15.33897 -14.87598 -14.50592 -14.34367 -14.17727 -14.04062 -13.71203 -13.53243 -13.47253 -13.20399 -12.82272 -12.69120 -12.29932 -12.21413 -12.01474 -11.86878 -11.79436 -11.64170 -11.53210 -11.34375 -11.10774 -10.92128 -10.90664 -10.83139 -10.69432 -10.55259 -9.89790 -9.84400 -9.41403 -9.19878 -9.09842 -8.93853 -8.86840 -8.43583 -8.36464 -6.00896 -4.03879 1.01880 1.09738 2.66728 3.30313 3.37748 3.40331 3.41258 3.43694 4.06661 4.16360 4.26697 4.43371 4.46964 4.61747 4.67930 4.79698 4.86000 4.88073 4.95315 5.04607 5.16312 5.27494 5.32192 5.34854 5.38668 5.45054 5.59568 5.64876 5.67373 5.68695 5.72876 5.77158 5.83285 5.84251 5.88929 6.14245 6.16332 6.21317 6.21616 6.27249 6.32977 6.41762 6.60027 6.64794 6.68580 6.88762 7.04991 7.19523 7.65437 7.78296 7.98251 8.16472 8.39245 8.82183 9.03057 9.60208 11.10394 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.001953 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.108910 B =14330.784107 C =14516.863308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.193 3.807 3 C -0.156 4.156 4 C -0.055 4.055 5 H 0.094 0.906 6 C -0.063 4.063 7 C -0.116 4.116 8 C -0.120 4.120 9 C -0.124 4.124 10 C -0.120 4.120 11 C -0.109 4.109 12 C -0.126 4.126 13 C 0.098 3.902 14 N -0.633 5.633 15 C 0.720 3.280 16 O -0.585 6.585 17 N -0.741 5.741 18 C 0.136 3.864 19 C -0.120 4.120 20 C 0.024 3.976 21 C -0.521 4.521 22 H 0.056 0.944 23 C 0.056 3.944 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.392 0.608 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.019 0.981 50 H 0.019 0.981 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 -0.527 32.249 32.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 C -0.215 4.215 4 C -0.075 4.075 5 H 0.112 0.888 6 C -0.064 4.064 7 C -0.134 4.134 8 C -0.138 4.138 9 C -0.142 4.142 10 C -0.138 4.138 11 C -0.127 4.127 12 C -0.164 4.164 13 C -0.026 4.026 14 N -0.373 5.373 15 C 0.422 3.578 16 O -0.463 6.463 17 N -0.396 5.396 18 C 0.013 3.987 19 C -0.158 4.158 20 C -0.014 4.014 21 C -0.559 4.559 22 H 0.074 0.926 23 C -0.145 4.145 24 N -0.532 5.532 25 Si 0.721 3.279 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.226 0.774 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.038 0.962 50 H 0.038 0.962 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.448 0.301 31.748 31.844 hybrid contribution 0.739 -1.042 -0.637 1.428 sum -1.709 -0.741 31.111 31.166 Atomic orbital electron populations 1.22330 0.94095 1.02273 1.02718 1.20623 0.94350 0.91732 0.82553 1.22167 1.00801 0.95431 1.03059 1.21295 0.97072 0.96570 0.92513 0.88821 1.19514 0.95694 0.96383 0.94779 1.21035 0.99392 0.99031 0.93924 1.21119 0.94698 0.99014 0.98954 1.21149 0.98327 0.96540 0.98222 1.21147 0.99010 0.99367 0.94285 1.21144 0.94111 0.98801 0.98649 1.22973 1.02409 0.96065 0.94983 1.22290 0.95173 0.89540 0.95574 1.47711 1.54215 1.31576 1.03758 1.15491 0.80420 0.82747 0.79095 1.90889 1.43165 1.29853 1.82415 1.45429 1.55098 1.32807 1.06222 1.21498 1.00518 0.99517 0.77199 1.21883 0.99010 0.97221 0.97662 1.19033 0.97361 0.97144 0.87862 1.21244 1.30843 1.12748 0.91105 0.92613 1.25038 0.95460 0.95625 0.98416 1.69981 1.40099 1.30995 1.12168 0.86529 0.79403 0.81173 0.80828 1.19781 1.21017 1.21009 0.91815 0.90963 0.92504 0.92698 0.90614 0.92048 0.86096 0.86185 0.86298 0.86137 0.85780 0.89560 0.90007 0.90695 0.91430 0.77430 0.92022 0.91998 0.92829 0.92843 0.96241 0.96237 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 6.99 37.15 0.26 -1.54 16 2 C 0.19 2.04 0.77 -130.84 -0.10 1.94 16 3 C -0.16 -1.73 8.41 37.16 0.31 -1.41 16 4 C -0.06 -0.43 2.64 -89.94 -0.24 -0.67 16 5 H 0.09 0.64 7.76 -51.93 -0.40 0.24 16 6 C -0.06 -0.49 3.59 -104.62 -0.38 -0.87 16 7 C -0.12 -0.84 9.69 -39.58 -0.38 -1.22 16 8 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 9 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 10 C -0.12 -0.87 10.05 -39.59 -0.40 -1.27 16 11 C -0.11 -0.85 6.82 -39.59 -0.27 -1.12 16 12 C -0.13 -0.86 6.40 -24.47 -0.16 -1.01 16 13 C 0.10 0.82 6.58 -2.42 -0.02 0.81 16 14 N -0.63 -7.59 2.82 -161.31 -0.45 -8.04 16 15 C 0.72 11.51 8.06 -86.92 -0.70 10.81 16 16 O -0.59 -11.52 14.02 5.29 0.07 -11.45 16 17 N -0.74 -11.32 5.52 -65.22 -0.36 -11.68 16 18 C 0.14 2.48 5.67 -4.04 -0.02 2.46 16 19 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 20 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 21 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 22 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 25 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H 0.06 0.67 6.58 -51.93 -0.34 0.33 16 30 H 0.07 1.05 6.87 -51.93 -0.36 0.69 16 31 H 0.06 0.63 6.33 -51.93 -0.33 0.31 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.07 6.90 -51.93 -0.36 0.71 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.12 0.70 8.05 -52.49 -0.42 0.28 16 36 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 39 H 0.12 0.93 5.35 -52.48 -0.28 0.65 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.56 5.90 -51.93 -0.31 0.25 16 42 H 0.07 0.58 7.30 -51.93 -0.38 0.20 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.39 4.95 6.95 -40.82 -0.28 4.66 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -33.13 396.71 -11.12 -44.25 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.50 Total: 1.67 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -3.58 Total: -11.06 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.08 Total: -45.94 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.13 -11.12 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422152596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.514 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds