Wall clock time and date at job start Tue Mar 31 2020 16:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53010 * 109.99603 * 2 1 4 4 C 1.54325 * 109.88479 * 121.09354 * 2 1 3 5 5 H 1.08999 * 110.72217 * 215.76838 * 4 2 1 6 6 C 1.50701 * 110.71826 * 338.86620 * 4 2 1 7 7 C 1.38241 * 119.99661 * 255.78104 * 6 4 2 8 8 C 1.38234 * 119.99632 * 180.02562 * 7 6 4 9 9 C 1.38238 * 120.00148 * 0.02562 * 8 7 6 10 10 C 1.38234 * 119.99641 * 0.25720 * 9 8 7 11 11 C 1.38228 * 120.00253 * 359.48556 * 10 9 8 12 12 C 1.55155 * 103.09772 * 97.31648 * 4 2 1 13 13 C 1.55122 * 101.48964 * 35.28142 * 12 4 2 14 14 N 1.47022 * 109.88520 * 238.90682 * 2 1 3 15 15 C 1.34776 * 125.64684 * 59.48145 * 14 2 1 16 16 O 1.21583 * 120.00199 * 0.02562 * 15 14 2 17 17 N 1.34779 * 119.99888 * 179.97438 * 15 14 2 18 18 C 1.46497 * 119.99904 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47167 * 180.02562 * 18 17 15 20 20 C 1.53002 * 109.47069 * 180.02562 * 19 18 17 21 21 C 1.50704 * 109.46682 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00151 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99732 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00182 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00038 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46854 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47050 * 119.99985 * 25 23 21 28 28 H 1.48501 * 109.47164 * 240.00010 * 25 23 21 29 29 H 1.09001 * 109.47424 * 295.90637 * 1 2 3 30 30 H 1.09001 * 109.47563 * 55.90739 * 1 2 3 31 31 H 1.08999 * 109.47286 * 175.90886 * 1 2 3 32 32 H 1.08998 * 109.46896 * 181.09408 * 3 2 1 33 33 H 1.09000 * 109.47075 * 301.09529 * 3 2 1 34 34 H 1.08997 * 109.47028 * 61.09720 * 3 2 1 35 35 H 1.08000 * 119.99726 * 0.02562 * 7 6 4 36 36 H 1.07995 * 119.99546 * 179.97438 * 8 7 6 37 37 H 1.07999 * 119.99632 * 179.97438 * 9 8 7 38 38 H 1.08007 * 119.99812 * 179.72748 * 10 9 8 39 39 H 1.08003 * 120.00331 * 180.23979 * 11 10 9 40 40 H 1.08999 * 111.00514 * 153.49289 * 12 4 2 41 41 H 1.08998 * 111.00378 * 277.33933 * 12 4 2 42 42 H 1.08997 * 110.42449 * 204.29364 * 13 12 4 43 43 H 1.09005 * 110.29989 * 82.08777 * 13 12 4 44 44 H 0.96994 * 120.00124 * 0.02562 * 17 15 14 45 45 H 1.09006 * 109.47297 * 300.00204 * 18 17 15 46 46 H 1.08999 * 109.47120 * 60.00785 * 18 17 15 47 47 H 1.08993 * 109.46893 * 300.00289 * 19 18 17 48 48 H 1.08999 * 109.46811 * 60.00166 * 19 18 17 49 49 H 1.08999 * 109.47074 * 299.99974 * 20 19 18 50 50 H 1.08999 * 109.47174 * 60.00382 * 20 19 18 51 51 H 0.97001 * 120.00239 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0532 1.4379 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.9639 -0.2812 1.6201 6 6 0.9998 -0.8041 2.3174 7 6 1.0943 0.0226 3.4214 8 6 0.1268 -0.0279 4.4074 9 6 -0.9348 -0.9055 4.2899 10 6 -1.0260 -1.7363 3.1888 11 6 -0.0615 -1.6820 2.2002 12 6 2.3554 -2.1700 0.6957 13 6 2.8568 -1.8497 -0.7369 14 7 2.0300 -0.7140 -1.1839 15 6 1.7742 -0.3852 -2.4657 16 8 1.0751 0.5769 -2.7186 17 7 2.2941 -1.1223 -3.4671 18 6 2.0165 -0.7646 -4.8604 19 6 2.7198 -1.7547 -5.7910 20 6 2.4303 -1.3807 -7.2461 21 6 3.1235 -2.3556 -8.1627 22 1 3.7121 -3.1611 -7.7488 23 6 3.0065 -2.2192 -9.5297 24 7 2.2902 -1.2381 -10.0337 25 14 3.8651 -3.4280 -10.6659 26 1 4.6010 -4.4317 -9.8557 27 1 2.8557 -4.1173 -11.5093 28 1 4.8208 -2.6965 -11.5358 29 1 -0.3634 0.4490 0.9244 30 1 -0.3634 0.5760 -0.8510 31 1 -0.3634 -1.0250 -0.0733 32 1 3.1429 1.4279 -0.0196 33 1 1.6786 1.9608 -0.8800 34 1 1.7106 1.9491 0.8996 35 1 1.9239 0.7079 3.5133 36 1 0.2008 0.6177 5.2700 37 1 -1.6904 -0.9452 5.0605 38 1 -1.8531 -2.4251 3.0991 39 1 -0.1348 -2.3284 1.3381 40 1 3.1316 -2.6591 1.2842 41 1 1.4502 -2.7764 0.6651 42 1 2.7088 -2.7079 -1.3924 43 1 3.9093 -1.5671 -0.7148 44 1 2.8521 -1.8896 -3.2654 45 1 0.9415 -0.8006 -5.0375 46 1 2.3836 0.2428 -5.0569 47 1 3.7946 -1.7190 -5.6140 48 1 2.3523 -2.7619 -5.5943 49 1 1.3554 -1.4160 -7.4234 50 1 2.7980 -0.3736 -7.4424 51 1 2.2075 -1.1423 -10.9954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422152596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:31 Heat of formation + Delta-G solvation = -32.858752 kcal Electronic energy + Delta-G solvation = -28253.513155 eV Core-core repulsion = 24537.349615 eV Total energy + Delta-G solvation = -3716.163539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.99643 -40.36465 -38.65620 -36.89216 -35.29536 -34.25931 -33.19475 -32.68722 -31.81390 -30.52654 -28.40802 -28.22391 -26.57170 -25.13761 -23.90271 -23.12396 -22.96270 -22.27368 -21.12108 -20.00091 -18.58249 -18.37684 -17.77201 -17.25073 -16.86224 -16.52185 -16.28775 -16.05013 -15.83114 -15.53659 -15.25613 -14.89600 -14.59736 -14.34763 -14.26092 -14.17276 -13.97881 -13.74982 -13.67070 -13.46930 -13.34024 -12.94639 -12.80227 -12.76972 -12.58995 -12.51288 -12.35477 -12.26632 -12.01108 -11.79689 -11.67972 -11.62184 -11.54337 -11.44753 -11.22147 -11.01258 -10.56228 -10.19514 -9.72085 -9.50085 -9.47860 -8.19415 -6.31012 0.48438 0.58054 1.41678 1.42030 1.54971 1.58425 2.15951 2.41841 2.89333 3.03035 3.14278 3.52445 3.66728 3.67629 4.08361 4.09746 4.16256 4.18178 4.20984 4.22320 4.29822 4.34491 4.40527 4.54141 4.55517 4.65071 4.69400 4.69864 4.74695 4.82174 4.91054 4.94078 4.95615 4.98753 5.06366 5.14494 5.16249 5.20698 5.24150 5.25586 5.34415 5.47135 5.54112 5.56194 5.65485 5.70536 5.71215 5.78043 5.84077 6.10033 6.18345 6.22442 6.86271 7.02750 7.38532 7.59973 8.92943 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.001953 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.108910 B =14330.784107 C =14516.863308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.186 3.814 3 C -0.152 4.152 4 C -0.044 4.044 5 H 0.110 0.890 6 C -0.072 4.072 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.131 4.131 10 C -0.132 4.132 11 C -0.120 4.120 12 C -0.118 4.118 13 C 0.089 3.911 14 N -0.629 5.629 15 C 0.714 3.286 16 O -0.630 6.630 17 N -0.731 5.731 18 C 0.152 3.848 19 C -0.099 4.099 20 C 0.024 3.976 21 C -0.539 4.539 22 H 0.067 0.933 23 C -0.005 4.005 24 N -0.935 5.935 25 Si 0.969 3.031 26 H -0.257 1.257 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.408 0.592 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.067 0.933 48 H 0.067 0.933 49 H -0.008 1.008 50 H -0.008 1.008 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 -2.575 34.573 34.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.101 3.899 3 C -0.210 4.210 4 C -0.063 4.063 5 H 0.128 0.872 6 C -0.073 4.073 7 C -0.140 4.140 8 C -0.145 4.145 9 C -0.149 4.149 10 C -0.150 4.150 11 C -0.137 4.137 12 C -0.156 4.156 13 C -0.033 4.033 14 N -0.366 5.366 15 C 0.416 3.584 16 O -0.512 6.512 17 N -0.387 5.387 18 C 0.027 3.973 19 C -0.137 4.137 20 C -0.014 4.014 21 C -0.577 4.577 22 H 0.086 0.914 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.793 3.207 26 H -0.181 1.181 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.245 0.755 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.010 0.990 50 H 0.010 0.990 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.679 -1.792 34.135 34.188 hybrid contribution 0.134 -0.355 -1.276 1.331 sum -0.545 -2.147 32.859 32.933 Atomic orbital electron populations 1.22218 0.95128 1.01650 1.01346 1.20814 0.93642 0.91987 0.83441 1.22116 1.01173 0.95621 1.02119 1.21226 0.97480 0.96767 0.90829 0.87234 1.19539 0.95790 0.96847 0.95081 1.21272 0.99952 0.99011 0.93764 1.21405 0.94469 0.99124 0.99490 1.21428 0.98783 0.96259 0.98453 1.21367 0.99328 0.99835 0.94440 1.21233 0.94509 0.99129 0.98867 1.22993 1.03195 0.95530 0.93873 1.22619 0.95446 0.88450 0.96775 1.47728 1.53872 1.32469 1.02578 1.15662 0.80134 0.82269 0.80341 1.90866 1.45064 1.31792 1.83439 1.45080 1.55426 1.33373 1.04840 1.21046 0.99109 0.98261 0.78841 1.21576 1.00002 0.97984 0.94110 1.18945 0.95287 0.95562 0.91620 1.21704 1.30893 1.13243 0.91866 0.91446 1.26052 0.96189 0.97580 1.00455 1.70128 1.41692 1.33071 1.12684 0.85342 0.78194 0.78738 0.78406 1.18110 1.20609 1.20586 0.90955 0.94759 0.92338 0.91862 0.94402 0.90233 0.84669 0.84461 0.84754 0.85158 0.85913 0.86916 0.90099 0.89778 0.89787 0.75538 0.93761 0.93694 0.91386 0.91410 0.99002 0.98979 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 6.99 71.98 0.50 -2.90 16 2 C 0.19 3.78 0.77 3.95 0.00 3.78 16 3 C -0.15 -3.31 8.41 71.99 0.61 -2.70 16 4 C -0.04 -0.57 2.64 -10.35 -0.03 -0.60 16 5 H 0.11 1.11 7.76 -2.39 -0.02 1.09 16 6 C -0.07 -0.96 3.59 -19.87 -0.07 -1.04 16 7 C -0.12 -1.47 9.69 22.27 0.22 -1.25 16 8 C -0.13 -1.45 10.05 22.27 0.22 -1.22 16 9 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 10 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 11 C -0.12 -1.68 6.82 22.27 0.15 -1.53 16 12 C -0.12 -1.23 6.40 32.06 0.21 -1.03 16 13 C 0.09 1.26 6.58 86.93 0.57 1.83 16 14 N -0.63 -14.52 2.82 -782.53 -2.21 -16.73 16 15 C 0.71 23.11 8.06 179.05 1.44 24.56 16 16 O -0.63 -26.12 14.02 -3.98 -0.06 -26.18 16 17 N -0.73 -22.08 5.52 -478.53 -2.64 -24.72 16 18 C 0.15 5.70 5.67 86.38 0.49 6.19 16 19 C -0.10 -3.90 5.27 30.60 0.16 -3.74 16 20 C 0.02 1.25 4.97 29.85 0.15 1.40 16 21 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 22 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 23 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 24 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 25 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 H 0.07 1.52 6.58 -2.39 -0.02 1.51 16 30 H 0.03 1.05 6.87 -2.39 -0.02 1.04 16 31 H 0.06 1.31 6.33 -2.39 -0.02 1.30 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.04 1.11 6.90 -2.39 -0.02 1.10 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.14 1.17 8.05 -2.91 -0.02 1.15 16 36 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 37 H 0.13 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.12 1.69 5.35 -2.91 -0.02 1.68 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.89 5.90 -2.39 -0.01 0.88 16 42 H 0.08 1.06 7.30 -2.39 -0.02 1.04 16 43 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.41 9.57 6.95 -92.71 -0.64 8.93 16 45 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 46 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 48 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 49 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 50 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 51 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -74.45 396.71 3.44 -71.00 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.27 Total: 18.99 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 5.77 Total: -11.03 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.56 Total: -98.85 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.06 Total: -26.18 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -74.45 3.44 -71.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422152596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.144 kcal (2) G-P(sol) polarization free energy of solvation -74.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds