Wall clock time and date at job start Tue Mar 31 2020 16:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.46467 * 2 1 4 4 C 1.38229 * 120.00047 * 90.00439 * 3 2 1 5 5 C 1.38235 * 120.00199 * 179.72318 * 4 3 2 6 6 C 1.38237 * 119.99900 * 0.25235 * 5 4 3 7 7 C 1.50690 * 120.00181 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47162 * 90.00152 * 7 6 5 9 9 C 1.34780 * 120.00125 * 89.99840 * 8 7 6 10 10 O 1.21281 * 119.99837 * 352.97312 * 9 8 7 11 11 C 1.50694 * 119.99809 * 172.96488 * 9 8 7 12 12 H 1.08992 * 109.47369 * 21.53880 * 11 9 8 13 13 N 1.46907 * 109.46836 * 141.53869 * 11 9 8 14 14 C 1.53002 * 109.47534 * 261.53532 * 11 9 8 15 15 C 1.52999 * 109.47454 * 174.37654 * 14 11 9 16 16 C 1.50692 * 109.47344 * 180.02562 * 15 14 11 17 17 H 1.08004 * 120.00016 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00105 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99791 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99701 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47120 * 60.00511 * 20 18 16 22 22 H 1.48505 * 109.46861 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47403 * 300.00021 * 20 18 16 24 24 C 1.46505 * 119.99979 * 270.00207 * 8 7 6 25 25 C 1.52999 * 117.49708 * 212.42281 * 24 8 7 26 26 C 1.52999 * 117.49674 * 143.79868 * 24 8 7 27 27 C 1.38240 * 119.99802 * 0.02562 * 6 5 4 28 28 C 1.38234 * 119.99989 * 359.95585 * 27 6 5 29 29 H 1.09003 * 109.47230 * 299.99484 * 1 2 3 30 30 H 1.08998 * 109.47515 * 60.00171 * 1 2 3 31 31 H 1.09007 * 109.46740 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47230 * 240.00516 * 2 1 3 33 33 H 1.08998 * 109.47515 * 119.99829 * 2 1 3 34 34 H 1.08006 * 119.99828 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00126 * 180.27644 * 5 4 3 36 36 H 1.08999 * 109.47456 * 210.00221 * 7 6 5 37 37 H 1.09004 * 109.47507 * 330.00248 * 7 6 5 38 38 H 1.00902 * 110.99637 * 296.04295 * 13 11 9 39 39 H 1.00894 * 110.99962 * 59.99861 * 13 11 9 40 40 H 1.09005 * 109.47045 * 294.37722 * 14 11 9 41 41 H 1.08999 * 109.46907 * 54.36986 * 14 11 9 42 42 H 1.09002 * 109.46556 * 299.99979 * 15 14 11 43 43 H 1.09002 * 109.46919 * 59.99517 * 15 14 11 44 44 H 0.97006 * 119.99783 * 179.97438 * 19 18 16 45 45 H 1.09000 * 115.55077 * 358.12740 * 24 8 7 46 46 H 1.08995 * 117.49828 * 359.97438 * 25 24 8 47 47 H 1.09000 * 117.49634 * 145.02303 * 25 24 8 48 48 H 1.09000 * 117.49911 * 214.97620 * 26 24 8 49 49 H 1.08999 * 117.50150 * 359.97438 * 26 24 8 50 50 H 1.07996 * 119.99659 * 179.97438 * 27 6 5 51 51 H 1.08000 * 119.99591 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2626 2.0726 1.1971 5 6 2.7287 3.3740 1.1971 6 6 2.9594 4.0255 0.0000 7 6 3.4669 5.4444 0.0000 8 7 4.9319 5.4390 -0.0026 9 6 5.6038 5.4372 -1.1710 10 8 5.0019 5.3115 -2.2164 11 6 7.1028 5.5916 -1.1784 12 1 7.5016 5.3122 -0.2033 13 7 7.6796 4.7205 -2.2113 14 6 7.4642 7.0475 -1.4791 15 6 8.9771 7.2349 -1.3488 16 6 9.3329 8.6691 -1.6444 17 1 8.5576 9.3762 -1.9001 18 6 10.6483 9.0786 -1.5884 19 7 11.5923 8.2177 -1.2765 20 14 11.0894 10.8563 -1.9555 21 1 10.3948 11.7477 -0.9922 22 1 12.5577 11.0385 -1.8276 23 1 10.6665 11.1960 -3.3378 24 6 5.6667 5.4355 1.2648 25 6 7.0147 6.1582 1.3019 26 6 6.9654 4.6291 1.3262 27 6 2.7235 3.3758 -1.1972 28 6 2.2578 2.0743 -1.1972 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0823 1.5635 2.1324 35 1 2.9129 3.8816 2.1324 36 1 3.1039 5.9602 -0.8890 37 1 3.1071 5.9591 0.8909 38 1 7.5098 3.7485 -2.0006 39 1 7.3252 4.9597 -3.1251 40 1 7.1533 7.2970 -2.4937 41 1 6.9547 7.7019 -0.7718 42 1 9.2879 6.9855 -0.3343 43 1 9.4865 6.5805 -2.0561 44 1 12.5177 8.5058 -1.2375 45 1 5.0522 5.4693 2.1645 46 1 7.3551 6.6358 0.3832 47 1 7.2873 6.6677 2.2261 48 1 7.2057 4.1327 2.2664 49 1 7.2730 4.1009 0.4238 50 1 2.9034 3.8850 -2.1324 51 1 2.0739 1.5666 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424099455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:07 Heat of formation + Delta-G solvation = 52.802335 kcal Electronic energy + Delta-G solvation = -28739.561881 eV Core-core repulsion = 25027.112885 eV Total energy + Delta-G solvation = -3712.448996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.06317 -39.54326 -37.36746 -35.97370 -34.58048 -33.14512 -32.66282 -31.05625 -30.26679 -30.11341 -27.11257 -25.97505 -24.19556 -23.22452 -22.87449 -22.31868 -22.03152 -20.79251 -20.05453 -19.49506 -17.14607 -16.58009 -16.28668 -15.98041 -15.60223 -15.56628 -15.48398 -14.68822 -14.51568 -14.39346 -14.14789 -14.00352 -13.91494 -13.74038 -13.47871 -13.11945 -12.64506 -12.44353 -12.34595 -12.18736 -11.99909 -11.81684 -11.46948 -11.40060 -11.23084 -11.05583 -10.98658 -10.91809 -10.76239 -10.60616 -10.58984 -10.17333 -9.98143 -9.59564 -9.37552 -9.03580 -9.00085 -8.80036 -8.43395 -8.30150 -8.13710 -5.92967 -3.95023 1.11369 1.29295 2.69025 2.95129 3.36934 3.41335 3.44062 3.69044 3.91503 4.43946 4.48344 4.51871 4.59415 4.75980 4.78298 4.84921 4.87668 4.94852 4.96477 5.01741 5.04519 5.18425 5.24054 5.31233 5.41875 5.43130 5.45326 5.54673 5.57088 5.65181 5.68825 5.72140 5.81449 5.92381 5.94242 5.95786 6.10111 6.27672 6.29746 6.38663 6.45903 6.49169 6.55310 6.73994 6.87601 7.05555 7.33073 7.51922 7.75946 7.78217 7.95807 8.13206 8.29365 8.48825 9.12218 9.67924 11.17711 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026879 B = 0.002435 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.449040 B =11493.900318 C =11697.064933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.124 4.124 5 C -0.102 4.102 6 C -0.107 4.107 7 C 0.155 3.845 8 N -0.581 5.581 9 C 0.486 3.514 10 O -0.544 6.544 11 C 0.013 3.987 12 H 0.155 0.845 13 N -0.808 5.808 14 C -0.101 4.101 15 C 0.032 3.968 16 C -0.523 4.523 17 H 0.051 0.949 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.073 3.927 25 C -0.227 4.227 26 C -0.206 4.206 27 C -0.090 4.090 28 C -0.122 4.122 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.329 0.671 39 H 0.345 0.655 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.016 0.984 43 H 0.036 0.964 44 H 0.260 0.740 45 H 0.130 0.870 46 H 0.157 0.843 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.111 0.889 50 H 0.128 0.872 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.458 -14.660 8.050 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.142 4.142 5 C -0.120 4.120 6 C -0.108 4.108 7 C 0.032 3.968 8 N -0.312 5.312 9 C 0.274 3.726 10 O -0.421 6.421 11 C -0.100 4.100 12 H 0.171 0.829 13 N -0.336 5.336 14 C -0.139 4.139 15 C -0.005 4.005 16 C -0.561 4.561 17 H 0.070 0.930 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.032 4.032 25 C -0.264 4.264 26 C -0.244 4.244 27 C -0.109 4.109 28 C -0.140 4.140 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.148 0.852 46 H 0.174 0.826 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.129 0.871 50 H 0.146 0.854 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.881 -14.406 7.695 25.730 hybrid contribution -0.732 0.653 -0.268 1.016 sum -20.613 -13.753 7.427 25.869 Atomic orbital electron populations 1.21743 0.94748 1.01614 1.02217 1.20547 0.96152 0.92801 1.02784 1.19900 0.98974 0.96065 0.93275 1.20942 1.00919 0.94939 0.97362 1.20988 0.98928 0.94792 0.97320 1.20221 1.00099 0.97099 0.93379 1.20347 0.79978 0.92718 1.03744 1.47689 1.05208 1.72971 1.05306 1.22789 0.92745 0.74393 0.82671 1.90606 1.70623 1.49362 1.31478 1.23753 0.86230 0.98529 1.01528 0.82898 1.59066 1.63227 1.06026 1.05251 1.21726 1.02264 0.89216 1.00718 1.19036 0.87163 0.96566 0.97772 1.21227 0.92456 0.95359 1.47095 0.93038 1.24978 0.96626 0.97182 0.95465 1.69962 1.00354 1.34062 1.48679 0.86716 0.77164 0.85573 0.78860 1.20370 1.21352 1.20339 1.21700 0.88138 1.05884 0.87449 1.24974 0.98714 0.94642 1.08069 1.23794 1.01125 0.95352 1.04139 1.21227 0.96836 0.94545 0.98282 1.21031 1.00548 0.95003 0.97441 0.92593 0.92550 0.92460 0.91101 0.91119 0.86338 0.86299 0.89206 0.89759 0.85917 0.84082 0.92504 0.92418 0.96580 0.94607 0.93054 0.85197 0.82628 0.87692 0.87840 0.87149 0.85408 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.58 16 2 C -0.09 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16 4 C -0.12 -1.17 9.70 -39.59 -0.38 -1.55 16 5 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 6 C -0.11 -1.23 5.46 -104.63 -0.57 -1.80 16 7 C 0.15 1.81 5.52 -5.20 -0.03 1.78 16 8 N -0.58 -7.81 2.85 -167.47 -0.48 -8.29 16 9 C 0.49 8.02 6.52 -10.99 -0.07 7.95 16 10 O -0.54 -10.14 15.23 5.56 0.08 -10.06 16 11 C 0.01 0.23 1.44 -68.86 -0.10 0.13 16 12 H 0.15 2.51 1.88 -58.68 -0.11 2.40 16 13 N -0.81 -13.92 8.63 -5.65 -0.05 -13.97 16 14 C -0.10 -2.11 3.78 -26.73 -0.10 -2.21 16 15 C 0.03 0.80 4.72 -27.89 -0.13 0.67 16 16 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 17 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.07 0.85 6.63 -67.93 -0.45 0.40 16 25 C -0.23 -3.09 9.30 -26.73 -0.25 -3.34 16 26 C -0.21 -2.48 9.30 -26.73 -0.25 -2.73 16 27 C -0.09 -1.12 9.51 -39.58 -0.38 -1.49 16 28 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.09 1.16 7.47 -51.93 -0.39 0.78 16 37 H 0.08 0.77 8.00 -51.93 -0.42 0.35 16 38 H 0.33 4.92 9.06 -39.29 -0.36 4.57 16 39 H 0.35 6.09 8.58 -39.29 -0.34 5.75 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.16 7.01 -51.93 -0.36 0.80 16 42 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 43 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.13 1.14 8.12 -51.93 -0.42 0.72 16 46 H 0.16 2.63 1.50 -51.93 -0.08 2.55 16 47 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.11 1.48 5.88 -51.93 -0.31 1.17 16 50 H 0.13 1.75 7.33 -52.49 -0.38 1.36 16 51 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 403.23 15.07 6.08 6.08 Total: -1.00 -32.07 403.23 -11.02 -43.10 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -8.14 Total: 13.83 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -4.23 Total: -21.48 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.21 Total: -48.20 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.07 -11.02 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.899 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds