Wall clock time and date at job start Tue Mar 31 2020 16:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.46467 * 2 1 4 4 C 1.38229 * 120.00047 * 90.00439 * 3 2 1 5 5 C 1.38235 * 120.00199 * 179.72318 * 4 3 2 6 6 C 1.38237 * 119.99900 * 0.25235 * 5 4 3 7 7 C 1.50690 * 120.00181 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47162 * 90.00152 * 7 6 5 9 9 C 1.34780 * 120.00125 * 89.99840 * 8 7 6 10 10 O 1.21281 * 119.99837 * 352.97312 * 9 8 7 11 11 C 1.50694 * 119.99809 * 172.96488 * 9 8 7 12 12 H 1.08992 * 109.47369 * 21.53880 * 11 9 8 13 13 N 1.46907 * 109.46836 * 141.53869 * 11 9 8 14 14 C 1.53002 * 109.47534 * 261.53532 * 11 9 8 15 15 C 1.52999 * 109.47454 * 174.37654 * 14 11 9 16 16 C 1.50692 * 109.47344 * 180.02562 * 15 14 11 17 17 H 1.08004 * 120.00016 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00105 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99791 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99701 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47120 * 60.00511 * 20 18 16 22 22 H 1.48505 * 109.46861 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47403 * 300.00021 * 20 18 16 24 24 C 1.46505 * 119.99979 * 270.00207 * 8 7 6 25 25 C 1.52999 * 117.49708 * 212.42281 * 24 8 7 26 26 C 1.52999 * 117.49674 * 143.79868 * 24 8 7 27 27 C 1.38240 * 119.99802 * 0.02562 * 6 5 4 28 28 C 1.38234 * 119.99989 * 359.95585 * 27 6 5 29 29 H 1.09003 * 109.47230 * 299.99484 * 1 2 3 30 30 H 1.08998 * 109.47515 * 60.00171 * 1 2 3 31 31 H 1.09007 * 109.46740 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47230 * 240.00516 * 2 1 3 33 33 H 1.08998 * 109.47515 * 119.99829 * 2 1 3 34 34 H 1.08006 * 119.99828 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00126 * 180.27644 * 5 4 3 36 36 H 1.08999 * 109.47456 * 210.00221 * 7 6 5 37 37 H 1.09004 * 109.47507 * 330.00248 * 7 6 5 38 38 H 1.00902 * 110.99637 * 296.04295 * 13 11 9 39 39 H 1.00894 * 110.99962 * 59.99861 * 13 11 9 40 40 H 1.09005 * 109.47045 * 294.37722 * 14 11 9 41 41 H 1.08999 * 109.46907 * 54.36986 * 14 11 9 42 42 H 1.09002 * 109.46556 * 299.99979 * 15 14 11 43 43 H 1.09002 * 109.46919 * 59.99517 * 15 14 11 44 44 H 0.97006 * 119.99783 * 179.97438 * 19 18 16 45 45 H 1.09000 * 115.55077 * 358.12740 * 24 8 7 46 46 H 1.08995 * 117.49828 * 359.97438 * 25 24 8 47 47 H 1.09000 * 117.49634 * 145.02303 * 25 24 8 48 48 H 1.09000 * 117.49911 * 214.97620 * 26 24 8 49 49 H 1.08999 * 117.50150 * 359.97438 * 26 24 8 50 50 H 1.07996 * 119.99659 * 179.97438 * 27 6 5 51 51 H 1.08000 * 119.99591 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2626 2.0726 1.1971 5 6 2.7287 3.3740 1.1971 6 6 2.9594 4.0255 0.0000 7 6 3.4669 5.4444 0.0000 8 7 4.9319 5.4390 -0.0026 9 6 5.6038 5.4372 -1.1710 10 8 5.0019 5.3115 -2.2164 11 6 7.1028 5.5916 -1.1784 12 1 7.5016 5.3122 -0.2033 13 7 7.6796 4.7205 -2.2113 14 6 7.4642 7.0475 -1.4791 15 6 8.9771 7.2349 -1.3488 16 6 9.3329 8.6691 -1.6444 17 1 8.5576 9.3762 -1.9001 18 6 10.6483 9.0786 -1.5884 19 7 11.5923 8.2177 -1.2765 20 14 11.0894 10.8563 -1.9555 21 1 10.3948 11.7477 -0.9922 22 1 12.5577 11.0385 -1.8276 23 1 10.6665 11.1960 -3.3378 24 6 5.6667 5.4355 1.2648 25 6 7.0147 6.1582 1.3019 26 6 6.9654 4.6291 1.3262 27 6 2.7235 3.3758 -1.1972 28 6 2.2578 2.0743 -1.1972 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0823 1.5635 2.1324 35 1 2.9129 3.8816 2.1324 36 1 3.1039 5.9602 -0.8890 37 1 3.1071 5.9591 0.8909 38 1 7.5098 3.7485 -2.0006 39 1 7.3252 4.9597 -3.1251 40 1 7.1533 7.2970 -2.4937 41 1 6.9547 7.7019 -0.7718 42 1 9.2879 6.9855 -0.3343 43 1 9.4865 6.5805 -2.0561 44 1 12.5177 8.5058 -1.2375 45 1 5.0522 5.4693 2.1645 46 1 7.3551 6.6358 0.3832 47 1 7.2873 6.6677 2.2261 48 1 7.2057 4.1327 2.2664 49 1 7.2730 4.1009 0.4238 50 1 2.9034 3.8850 -2.1324 51 1 2.0739 1.5666 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424099455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:06 Heat of formation + Delta-G solvation = 34.520797 kcal Electronic energy + Delta-G solvation = -28740.354628 eV Core-core repulsion = 25027.112885 eV Total energy + Delta-G solvation = -3713.241743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.25693 -40.34739 -38.58340 -37.22529 -35.70143 -34.77190 -33.94560 -32.10878 -31.83344 -30.93177 -28.58099 -27.20562 -25.63991 -23.99631 -23.84172 -23.49403 -23.16275 -21.80933 -21.47039 -20.70941 -18.57200 -18.11577 -17.46142 -17.17304 -16.95427 -16.46907 -16.38078 -16.28731 -15.83772 -15.70875 -15.32589 -15.06627 -14.60823 -14.56841 -14.33441 -14.23065 -14.08080 -13.93766 -13.62104 -13.22511 -13.16387 -12.95503 -12.80888 -12.64435 -12.50208 -12.29881 -12.14485 -12.09290 -11.85822 -11.73339 -11.70826 -11.67882 -11.60116 -11.30221 -11.06569 -10.92879 -10.48281 -9.82653 -9.73842 -9.58277 -9.35669 -8.13599 -6.23808 0.31251 0.49971 1.37948 1.41684 1.43909 1.51707 1.90676 2.44260 2.86476 2.94207 3.18907 3.31880 3.57807 3.77142 3.82738 3.88261 3.89968 3.96524 4.02507 4.10398 4.15412 4.16016 4.29134 4.39425 4.48948 4.54959 4.60891 4.64744 4.67449 4.72117 4.73802 4.84252 4.93067 5.05095 5.07278 5.11808 5.13140 5.16832 5.19958 5.23375 5.36632 5.50099 5.52182 5.58169 5.68358 5.71685 5.83219 5.96476 6.03948 6.10854 6.25261 6.29657 6.43548 6.92785 7.03807 7.43664 8.97088 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026879 B = 0.002435 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.449040 B =11493.900318 C =11697.064933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.125 4.125 5 C -0.098 4.098 6 C -0.118 4.118 7 C 0.153 3.847 8 N -0.574 5.574 9 C 0.485 3.515 10 O -0.573 6.573 11 C 0.020 3.980 12 H 0.169 0.831 13 N -0.819 5.819 14 C -0.085 4.085 15 C 0.046 3.954 16 C -0.546 4.546 17 H 0.052 0.948 18 C 0.005 3.995 19 N -0.925 5.925 20 Si 0.958 3.042 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.273 1.273 24 C 0.085 3.915 25 C -0.249 4.249 26 C -0.203 4.203 27 C -0.113 4.113 28 C -0.135 4.135 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.069 0.931 37 H 0.120 0.880 38 H 0.342 0.658 39 H 0.340 0.660 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.003 0.997 43 H 0.004 0.996 44 H 0.263 0.737 45 H 0.174 0.826 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.134 0.866 49 H 0.093 0.907 50 H 0.101 0.899 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.890 -15.128 10.837 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.143 4.143 5 C -0.116 4.116 6 C -0.120 4.120 7 C 0.032 3.968 8 N -0.303 5.303 9 C 0.272 3.728 10 O -0.452 6.452 11 C -0.093 4.093 12 H 0.185 0.815 13 N -0.348 5.348 14 C -0.123 4.123 15 C 0.009 3.991 16 C -0.584 4.584 17 H 0.070 0.930 18 C -0.193 4.193 19 N -0.565 5.565 20 Si 0.783 3.217 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.199 1.199 24 C -0.019 4.019 25 C -0.287 4.287 26 C -0.240 4.240 27 C -0.132 4.132 28 C -0.153 4.153 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.071 0.929 45 H 0.191 0.809 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.152 0.848 49 H 0.110 0.890 50 H 0.120 0.880 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.336 -14.883 10.511 28.057 hybrid contribution -0.304 0.734 -1.120 1.373 sum -21.640 -14.149 9.391 27.508 Atomic orbital electron populations 1.21724 0.94019 1.02439 1.01887 1.20599 0.96697 0.91409 1.03506 1.20207 0.98111 0.97119 0.92939 1.21305 0.99903 0.94906 0.98182 1.21278 0.97864 0.94985 0.97519 1.20205 1.01040 0.96944 0.93772 1.20503 0.78497 0.93375 1.04468 1.47717 1.06222 1.71323 1.05079 1.22466 0.92203 0.74692 0.83390 1.90599 1.70916 1.50877 1.32791 1.23643 0.87485 0.96132 1.02047 0.81507 1.59047 1.63592 1.07002 1.05126 1.21431 0.99078 0.92146 0.99608 1.18780 0.89884 0.94717 0.95769 1.21653 0.92906 0.96682 1.47177 0.93019 1.25861 0.96525 1.01835 0.95128 1.70089 1.00727 1.36229 1.49478 0.85614 0.77096 0.80078 0.78915 1.19063 1.20716 1.19871 1.22097 0.88017 1.04159 0.87629 1.24829 1.00956 0.95777 1.07098 1.23821 1.01209 0.94194 1.04782 1.21172 0.98607 0.95452 0.97923 1.21156 1.00990 0.94671 0.98521 0.92401 0.93407 0.91086 0.91054 0.89756 0.83748 0.83466 0.91295 0.86218 0.84492 0.84637 0.94553 0.91807 0.97910 0.97794 0.92867 0.80884 0.86242 0.86151 0.84831 0.88953 0.88047 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 71.98 0.71 -0.84 16 2 C -0.08 -1.07 6.06 29.85 0.18 -0.89 16 3 C -0.08 -1.47 5.13 -19.86 -0.10 -1.57 16 4 C -0.13 -1.95 9.70 22.27 0.22 -1.74 16 5 C -0.10 -1.62 9.70 22.27 0.22 -1.40 16 6 C -0.12 -2.58 5.46 -19.87 -0.11 -2.68 16 7 C 0.15 3.37 5.52 85.63 0.47 3.84 16 8 N -0.57 -14.72 2.85 -802.15 -2.29 -17.01 16 9 C 0.49 16.29 6.52 87.65 0.57 16.86 16 10 O -0.57 -22.33 15.23 -3.03 -0.05 -22.37 16 11 C 0.02 0.73 1.44 44.17 0.06 0.79 16 12 H 0.17 5.55 1.88 -8.72 -0.02 5.53 16 13 N -0.82 -29.63 8.63 -171.80 -1.48 -31.11 16 14 C -0.08 -3.67 3.78 30.59 0.12 -3.56 16 15 C 0.05 2.42 4.72 29.85 0.14 2.56 16 16 C -0.55 -31.58 9.11 25.60 0.23 -31.34 16 17 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 18 C 0.00 0.28 5.46 84.66 0.46 0.74 16 19 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 20 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.08 1.72 6.63 44.99 0.30 2.02 16 25 C -0.25 -6.42 9.30 30.60 0.28 -6.14 16 26 C -0.20 -4.42 9.30 30.60 0.28 -4.13 16 27 C -0.11 -2.86 9.51 22.27 0.21 -2.64 16 28 C -0.14 -2.93 9.70 22.27 0.22 -2.71 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 34 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.07 1.81 7.47 -2.39 -0.02 1.80 16 37 H 0.12 1.76 8.00 -2.39 -0.02 1.74 16 38 H 0.34 10.63 9.06 -89.69 -0.81 9.82 16 39 H 0.34 12.78 8.58 -89.70 -0.77 12.01 16 40 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.06 2.66 7.01 -2.39 -0.02 2.64 16 42 H 0.00 0.14 7.57 -2.39 -0.02 0.12 16 43 H 0.00 0.21 7.77 -2.39 -0.02 0.20 16 44 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 45 H 0.17 2.07 8.12 -2.39 -0.02 2.05 16 46 H 0.12 4.06 1.50 -2.39 0.00 4.06 16 47 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.09 2.39 5.88 -2.39 -0.01 2.38 16 50 H 0.10 3.03 7.33 -2.91 -0.02 3.01 16 51 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -72.19 403.23 2.32 -69.87 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: -0.65 Total: 42.68 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 4.47 Total: -32.84 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -3.49 Total: -104.24 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -72.19 2.32 -69.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.389 kcal (2) G-P(sol) polarization free energy of solvation -72.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds