Wall clock time and date at job start Tue Mar 31 2020 15:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.24707 * 2 1 4 4 C 1.52729 * 109.25119 * 240.53617 * 2 1 3 5 5 C 1.53247 * 108.43226 * 290.83501 * 4 2 1 6 6 C 1.52736 * 108.36671 * 290.12165 * 5 4 2 7 7 H 1.09004 * 109.22086 * 290.83657 * 6 5 4 8 8 N 1.46498 * 109.25117 * 171.39673 * 6 5 4 9 9 C 1.34778 * 119.99940 * 153.90386 * 8 6 5 10 10 O 1.21278 * 119.99872 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99648 * 179.97438 * 9 8 6 12 12 H 1.08997 * 109.47593 * 319.99852 * 11 9 8 13 13 N 1.46900 * 109.46883 * 199.99800 * 11 9 8 14 14 C 1.52995 * 109.47067 * 79.99984 * 11 9 8 15 15 C 1.53003 * 109.47092 * 185.00101 * 14 11 9 16 16 C 1.50702 * 109.47302 * 180.02562 * 15 14 11 17 17 H 1.08004 * 119.99940 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00011 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99767 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47226 * 89.99738 * 20 18 16 22 22 H 1.48500 * 109.46984 * 209.99405 * 20 18 16 23 23 H 1.48497 * 109.47166 * 329.99680 * 20 18 16 24 24 C 1.50625 * 110.58564 * 51.10810 * 6 5 4 25 25 C 1.38914 * 117.74739 * 162.54838 * 24 6 5 26 26 C 1.37932 * 120.54345 * 179.38217 * 25 24 6 27 27 C 1.38269 * 119.77252 * 0.05907 * 26 25 24 28 28 C 1.37936 * 119.77018 * 0.10798 * 27 26 25 29 29 C 1.37660 * 122.56601 * 342.20280 * 24 6 5 30 30 H 1.09001 * 109.46801 * 60.00015 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99903 * 1 2 3 33 33 H 1.09004 * 109.47569 * 60.00078 * 3 2 1 34 34 H 1.08997 * 109.47401 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47512 * 300.00195 * 3 2 1 36 36 H 1.09000 * 109.68510 * 50.53503 * 4 2 1 37 37 H 1.09002 * 109.68274 * 171.08513 * 4 2 1 38 38 H 1.09000 * 109.69096 * 170.40472 * 5 4 2 39 39 H 1.08990 * 109.71979 * 49.85701 * 5 4 2 40 40 H 0.96998 * 120.00107 * 333.89265 * 8 6 5 41 41 H 1.00910 * 110.99694 * 299.99941 * 13 11 9 42 42 H 1.00895 * 111.00187 * 63.95032 * 13 11 9 43 43 H 1.08999 * 109.47224 * 304.99228 * 14 11 9 44 44 H 1.09002 * 109.47752 * 64.99499 * 14 11 9 45 45 H 1.09004 * 109.46788 * 299.99441 * 15 14 11 46 46 H 1.08997 * 109.47811 * 59.99655 * 15 14 11 47 47 H 0.97000 * 120.00105 * 180.02562 * 19 18 16 48 48 H 1.08001 * 119.72991 * 359.41490 * 25 24 6 49 49 H 1.08003 * 120.11573 * 180.02562 * 26 25 24 50 50 H 1.07996 * 120.11352 * 180.09416 * 27 26 25 51 51 H 1.07997 * 119.72281 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0344 1.4445 0.0000 4 6 2.0336 -0.7092 -1.2554 5 6 1.7052 -2.2011 -1.1338 6 6 2.5941 -2.8026 -0.0470 7 1 3.6268 -2.8176 -0.3957 8 7 2.1579 -4.1734 0.2299 9 6 3.0341 -5.0737 0.7181 10 8 4.1837 -4.7490 0.9278 11 6 2.5853 -6.4837 1.0035 12 1 1.5888 -6.4656 1.4447 13 7 3.5239 -7.1163 1.9398 14 6 2.5508 -7.2819 -0.3013 15 6 1.9772 -8.6746 -0.0323 16 6 1.9438 -9.4610 -1.3174 17 1 2.2961 -9.0122 -2.2345 18 6 1.4626 -10.7531 -1.3226 19 7 1.0331 -11.2994 -0.2061 20 14 1.4205 -11.7276 -2.9158 21 1 2.6982 -12.4668 -3.0777 22 1 0.2922 -12.6922 -2.8764 23 1 1.2378 -10.7985 -4.0597 24 6 2.5084 -1.9890 1.2177 25 6 2.9442 -2.5793 2.3972 26 6 2.9035 -1.8821 3.5867 27 6 2.4240 -0.5853 3.6064 28 6 1.9876 0.0014 2.4367 29 6 2.0267 -0.6995 1.2380 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6691 1.9569 0.8900 34 1 3.1244 1.4488 -0.0005 35 1 1.6690 1.9570 -0.8900 36 1 1.5388 -0.2957 -2.1342 37 1 3.1119 -0.5768 -1.3443 38 1 1.8995 -2.6986 -2.0840 39 1 0.6572 -2.3260 -0.8616 40 1 1.2386 -4.4332 0.0620 41 1 4.4557 -7.1453 1.5534 42 1 3.5170 -6.6455 2.8321 43 1 1.9233 -6.7647 -1.0272 44 1 3.5622 -7.3757 -0.6969 45 1 2.6046 -9.1919 0.6936 46 1 0.9658 -8.5809 0.3631 47 1 0.6949 -12.2085 -0.2098 48 1 3.3184 -3.5923 2.3828 49 1 3.2444 -2.3476 4.4996 50 1 2.3911 -0.0339 4.5343 51 1 1.6129 1.0141 2.4531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424111066.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:03 Heat of formation + Delta-G solvation = -37.779962 kcal Electronic energy + Delta-G solvation = -28862.639956 eV Core-core repulsion = 25146.263017 eV Total energy + Delta-G solvation = -3716.376939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12078 -39.51123 -37.06420 -35.79037 -35.02847 -32.80572 -32.03522 -30.46663 -30.09485 -30.05176 -27.61296 -27.00954 -25.60257 -23.50606 -23.15988 -22.99359 -21.02958 -20.62699 -19.82871 -18.92481 -17.15896 -17.07739 -16.31301 -16.11714 -15.75456 -15.46257 -15.38038 -14.61658 -14.51734 -14.47825 -14.22915 -14.08308 -13.72953 -13.46677 -13.19454 -12.91112 -12.85094 -12.37396 -12.30726 -12.30021 -12.09079 -12.00755 -11.95779 -11.63339 -11.52788 -11.47933 -10.94733 -10.90027 -10.68295 -10.60337 -10.54169 -10.51248 -10.13018 -9.79727 -9.38113 -9.14784 -8.99729 -8.83258 -8.75418 -8.34920 -8.20348 -5.93944 -3.96130 1.21296 1.29645 2.73093 3.22317 3.34778 3.41058 3.43773 3.69057 4.24388 4.33087 4.49755 4.51953 4.60425 4.68232 4.86409 4.91566 4.93816 5.03172 5.07206 5.16495 5.17961 5.26474 5.31793 5.40621 5.41635 5.50734 5.51583 5.53846 5.55578 5.62894 5.69286 5.76988 5.82794 5.84616 5.89232 5.93684 5.98078 6.10583 6.36813 6.39731 6.43598 6.46175 6.61531 6.65167 6.90682 7.08483 7.36576 7.59035 7.75931 7.78996 7.96051 8.13009 8.29202 8.48253 9.11938 9.67058 11.16964 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.002638 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.404095 B =10613.364935 C =11590.001929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.129 4.129 6 C 0.184 3.816 7 H 0.096 0.904 8 N -0.723 5.723 9 C 0.484 3.516 10 O -0.550 6.550 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.807 5.807 14 C -0.095 4.095 15 C 0.031 3.969 16 C -0.522 4.522 17 H 0.052 0.948 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.088 4.088 25 C -0.104 4.104 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.126 4.126 29 C -0.059 4.059 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.404 0.596 41 H 0.348 0.652 42 H 0.333 0.667 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.013 0.987 47 H 0.259 0.741 48 H 0.130 0.870 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 27.229 3.449 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.198 4.198 4 C -0.144 4.144 5 C -0.167 4.167 6 C 0.079 3.921 7 H 0.114 0.886 8 N -0.375 5.375 9 C 0.271 3.729 10 O -0.428 6.428 11 C -0.038 4.038 12 H 0.115 0.885 13 N -0.334 5.334 14 C -0.133 4.133 15 C -0.006 4.006 16 C -0.561 4.561 17 H 0.070 0.930 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.089 4.089 25 C -0.122 4.122 26 C -0.145 4.145 27 C -0.138 4.138 28 C -0.143 4.143 29 C -0.059 4.059 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.239 0.761 41 H 0.162 0.838 42 H 0.145 0.855 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.148 0.852 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.283 26.605 3.588 26.847 hybrid contribution 0.036 0.251 -0.765 0.806 sum -0.247 26.856 2.822 27.005 Atomic orbital electron populations 1.21947 0.93506 1.02307 1.01852 1.19446 0.95826 0.94945 0.92358 1.21963 1.01333 0.94612 1.01909 1.21589 1.01657 0.94172 0.96969 1.21875 1.00211 0.96029 0.98548 1.19693 1.00146 0.80706 0.91549 0.88642 1.46292 1.14416 1.10038 1.66704 1.22780 0.85808 0.89104 0.75231 1.90649 1.18847 1.80656 1.52687 1.21855 0.97892 0.86543 0.97509 0.88459 1.58992 1.12854 1.56466 1.05111 1.21651 1.01260 0.98952 0.91432 1.19014 0.95971 0.88618 0.96981 1.21279 1.41604 0.98329 0.94859 0.93000 1.24991 0.95568 0.97764 0.96009 1.69972 1.42719 1.14498 1.25995 0.86654 0.77581 0.80011 0.84075 1.20724 1.21292 1.20007 1.19955 0.99604 0.93965 0.95425 1.21561 0.97674 1.01005 0.91977 1.21112 1.00439 0.94940 0.98047 1.21071 0.99340 0.95419 0.97967 1.21118 1.01230 0.99801 0.92195 1.19452 0.98604 0.93298 0.94592 0.92211 0.92149 0.92529 0.92271 0.92413 0.92262 0.90755 0.91262 0.90404 0.90549 0.76134 0.83790 0.85536 0.92824 0.92848 0.94687 0.96894 0.93098 0.85207 0.86317 0.86366 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.17 37.16 0.30 -0.68 16 2 C -0.03 -0.20 0.63 -155.84 -0.10 -0.30 16 3 C -0.14 -0.94 7.96 37.16 0.30 -0.64 16 4 C -0.11 -0.82 4.68 -26.74 -0.13 -0.94 16 5 C -0.13 -1.13 5.39 -26.74 -0.14 -1.28 16 6 C 0.18 2.12 2.59 -69.26 -0.18 1.94 16 7 H 0.10 1.29 7.55 -51.93 -0.39 0.90 16 8 N -0.72 -8.89 4.83 -55.10 -0.27 -9.16 16 9 C 0.48 7.31 5.57 -10.98 -0.06 7.25 16 10 O -0.55 -9.60 14.11 5.56 0.08 -9.52 16 11 C 0.08 1.28 3.15 -68.87 -0.22 1.06 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.81 -13.38 8.44 -5.66 -0.05 -13.42 16 14 C -0.09 -1.88 4.78 -26.73 -0.13 -2.01 16 15 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 16 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 17 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.09 -1.05 5.55 -104.62 -0.58 -1.63 16 25 C -0.10 -1.36 9.02 -39.44 -0.36 -1.72 16 26 C -0.13 -1.46 10.05 -39.68 -0.40 -1.86 16 27 C -0.12 -1.20 10.05 -39.68 -0.40 -1.60 16 28 C -0.13 -1.21 8.90 -39.44 -0.35 -1.56 16 29 C -0.06 -0.60 4.71 -104.62 -0.49 -1.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.47 6.45 -51.93 -0.34 0.13 16 32 H 0.06 0.39 8.06 -51.93 -0.42 -0.02 16 33 H 0.06 0.36 6.38 -51.93 -0.33 0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 36 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.63 6.27 -51.93 -0.33 0.30 16 40 H 0.40 4.31 8.60 -40.82 -0.35 3.96 16 41 H 0.35 5.86 8.58 -39.29 -0.34 5.53 16 42 H 0.33 4.79 9.06 -39.29 -0.36 4.43 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.03 0.97 7.75 -51.93 -0.40 0.56 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.13 1.91 4.49 -52.49 -0.24 1.67 16 49 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 50 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.12 0.91 6.32 -52.49 -0.33 0.58 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -32.17 395.17 -10.47 -42.64 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -8.43 Total: 10.85 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.48 Total: -17.87 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.42 Total: -48.75 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.17 -10.47 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111066.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.861 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds