Wall clock time and date at job start Tue Mar 31 2020 15:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.24707 * 2 1 4 4 C 1.52729 * 109.25119 * 240.53617 * 2 1 3 5 5 C 1.53247 * 108.43226 * 290.83501 * 4 2 1 6 6 C 1.52736 * 108.36671 * 290.12165 * 5 4 2 7 7 H 1.09004 * 109.22086 * 290.83657 * 6 5 4 8 8 N 1.46498 * 109.25117 * 171.39673 * 6 5 4 9 9 C 1.34778 * 119.99940 * 153.90386 * 8 6 5 10 10 O 1.21278 * 119.99872 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99648 * 179.97438 * 9 8 6 12 12 H 1.08997 * 109.47593 * 319.99852 * 11 9 8 13 13 N 1.46900 * 109.46883 * 199.99800 * 11 9 8 14 14 C 1.52995 * 109.47067 * 79.99984 * 11 9 8 15 15 C 1.53003 * 109.47092 * 185.00101 * 14 11 9 16 16 C 1.50702 * 109.47302 * 180.02562 * 15 14 11 17 17 H 1.08004 * 119.99940 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00011 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99767 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47226 * 89.99738 * 20 18 16 22 22 H 1.48500 * 109.46984 * 209.99405 * 20 18 16 23 23 H 1.48497 * 109.47166 * 329.99680 * 20 18 16 24 24 C 1.50625 * 110.58564 * 51.10810 * 6 5 4 25 25 C 1.38914 * 117.74739 * 162.54838 * 24 6 5 26 26 C 1.37932 * 120.54345 * 179.38217 * 25 24 6 27 27 C 1.38269 * 119.77252 * 0.05907 * 26 25 24 28 28 C 1.37936 * 119.77018 * 0.10798 * 27 26 25 29 29 C 1.37660 * 122.56601 * 342.20280 * 24 6 5 30 30 H 1.09001 * 109.46801 * 60.00015 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99903 * 1 2 3 33 33 H 1.09004 * 109.47569 * 60.00078 * 3 2 1 34 34 H 1.08997 * 109.47401 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47512 * 300.00195 * 3 2 1 36 36 H 1.09000 * 109.68510 * 50.53503 * 4 2 1 37 37 H 1.09002 * 109.68274 * 171.08513 * 4 2 1 38 38 H 1.09000 * 109.69096 * 170.40472 * 5 4 2 39 39 H 1.08990 * 109.71979 * 49.85701 * 5 4 2 40 40 H 0.96998 * 120.00107 * 333.89265 * 8 6 5 41 41 H 1.00910 * 110.99694 * 299.99941 * 13 11 9 42 42 H 1.00895 * 111.00187 * 63.95032 * 13 11 9 43 43 H 1.08999 * 109.47224 * 304.99228 * 14 11 9 44 44 H 1.09002 * 109.47752 * 64.99499 * 14 11 9 45 45 H 1.09004 * 109.46788 * 299.99441 * 15 14 11 46 46 H 1.08997 * 109.47811 * 59.99655 * 15 14 11 47 47 H 0.97000 * 120.00105 * 180.02562 * 19 18 16 48 48 H 1.08001 * 119.72991 * 359.41490 * 25 24 6 49 49 H 1.08003 * 120.11573 * 180.02562 * 26 25 24 50 50 H 1.07996 * 120.11352 * 180.09416 * 27 26 25 51 51 H 1.07997 * 119.72281 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0344 1.4445 0.0000 4 6 2.0336 -0.7092 -1.2554 5 6 1.7052 -2.2011 -1.1338 6 6 2.5941 -2.8026 -0.0470 7 1 3.6268 -2.8176 -0.3957 8 7 2.1579 -4.1734 0.2299 9 6 3.0341 -5.0737 0.7181 10 8 4.1837 -4.7490 0.9278 11 6 2.5853 -6.4837 1.0035 12 1 1.5888 -6.4656 1.4447 13 7 3.5239 -7.1163 1.9398 14 6 2.5508 -7.2819 -0.3013 15 6 1.9772 -8.6746 -0.0323 16 6 1.9438 -9.4610 -1.3174 17 1 2.2961 -9.0122 -2.2345 18 6 1.4626 -10.7531 -1.3226 19 7 1.0331 -11.2994 -0.2061 20 14 1.4205 -11.7276 -2.9158 21 1 2.6982 -12.4668 -3.0777 22 1 0.2922 -12.6922 -2.8764 23 1 1.2378 -10.7985 -4.0597 24 6 2.5084 -1.9890 1.2177 25 6 2.9442 -2.5793 2.3972 26 6 2.9035 -1.8821 3.5867 27 6 2.4240 -0.5853 3.6064 28 6 1.9876 0.0014 2.4367 29 6 2.0267 -0.6995 1.2380 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6691 1.9569 0.8900 34 1 3.1244 1.4488 -0.0005 35 1 1.6690 1.9570 -0.8900 36 1 1.5388 -0.2957 -2.1342 37 1 3.1119 -0.5768 -1.3443 38 1 1.8995 -2.6986 -2.0840 39 1 0.6572 -2.3260 -0.8616 40 1 1.2386 -4.4332 0.0620 41 1 4.4557 -7.1453 1.5534 42 1 3.5170 -6.6455 2.8321 43 1 1.9233 -6.7647 -1.0272 44 1 3.5622 -7.3757 -0.6969 45 1 2.6046 -9.1919 0.6936 46 1 0.9658 -8.5809 0.3631 47 1 0.6949 -12.2085 -0.2098 48 1 3.3184 -3.5923 2.3828 49 1 3.2444 -2.3476 4.4996 50 1 2.3911 -0.0339 4.5343 51 1 1.6129 1.0141 2.4531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424111066.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:02 Heat of formation + Delta-G solvation = -57.699120 kcal Electronic energy + Delta-G solvation = -28863.503716 eV Core-core repulsion = 25146.263017 eV Total energy + Delta-G solvation = -3717.240699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.01324 -40.61671 -37.80426 -37.02499 -36.34545 -34.81529 -32.96788 -31.92852 -31.23880 -30.83014 -28.41646 -28.11320 -26.90605 -25.03770 -23.98300 -23.78381 -22.40105 -21.77680 -21.16712 -19.67301 -18.66018 -18.11782 -17.87712 -17.27047 -16.94108 -16.47515 -16.43274 -16.18126 -15.68347 -15.46461 -15.20783 -14.99793 -14.75830 -14.49470 -14.29253 -14.12340 -13.80854 -13.71984 -13.50242 -13.41379 -13.06475 -12.89682 -12.80864 -12.68933 -12.59946 -12.51239 -12.35153 -12.25260 -12.20894 -11.76385 -11.63764 -11.54658 -11.31070 -11.24710 -11.21344 -10.99178 -10.49090 -10.20068 -9.70797 -9.64349 -9.52402 -8.13791 -6.24133 0.38410 0.45478 1.41760 1.43165 1.48904 1.53944 2.15455 2.44759 2.84522 3.19310 3.52387 3.56414 3.62220 3.79823 3.85651 3.88582 4.01309 4.10632 4.18617 4.21300 4.31111 4.34219 4.37945 4.48144 4.58211 4.62608 4.76799 4.77983 4.85367 4.88906 4.93723 4.97077 5.01904 5.07260 5.12152 5.15314 5.16463 5.24941 5.25740 5.35159 5.40327 5.54143 5.57254 5.61088 5.64283 5.75115 5.84298 5.98587 6.08036 6.09847 6.30328 6.43416 6.51586 6.94653 7.12909 7.44053 8.97503 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.002638 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.404095 B =10613.364935 C =11590.001929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 C -0.139 4.139 4 C -0.104 4.104 5 C -0.124 4.124 6 C 0.186 3.814 7 H 0.071 0.929 8 N -0.710 5.710 9 C 0.492 3.508 10 O -0.575 6.575 11 C 0.086 3.914 12 H 0.106 0.894 13 N -0.818 5.818 14 C -0.080 4.080 15 C 0.040 3.960 16 C -0.543 4.543 17 H 0.056 0.944 18 C 0.001 3.999 19 N -0.930 5.930 20 Si 0.960 3.040 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.104 4.104 25 C -0.130 4.130 26 C -0.141 4.141 27 C -0.120 4.120 28 C -0.126 4.126 29 C -0.059 4.059 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.413 0.587 41 H 0.345 0.655 42 H 0.345 0.655 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.004 0.996 46 H -0.007 1.007 47 H 0.262 0.738 48 H 0.107 0.893 49 H 0.125 0.875 50 H 0.143 0.857 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 29.633 2.167 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 C -0.196 4.196 4 C -0.142 4.142 5 C -0.161 4.161 6 C 0.081 3.919 7 H 0.089 0.911 8 N -0.361 5.361 9 C 0.278 3.722 10 O -0.455 6.455 11 C -0.030 4.030 12 H 0.124 0.876 13 N -0.347 5.347 14 C -0.119 4.119 15 C 0.002 3.998 16 C -0.581 4.581 17 H 0.074 0.926 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.785 3.215 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.187 1.187 24 C -0.105 4.105 25 C -0.148 4.148 26 C -0.160 4.160 27 C -0.138 4.138 28 C -0.144 4.144 29 C -0.060 4.060 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.250 0.750 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.023 0.977 46 H 0.012 0.988 47 H 0.071 0.929 48 H 0.125 0.875 49 H 0.143 0.857 50 H 0.161 0.839 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.461 29.040 2.299 29.167 hybrid contribution 0.398 -0.452 -0.298 0.672 sum -1.063 28.588 2.001 28.677 Atomic orbital electron populations 1.21937 0.92557 1.02093 1.02824 1.19505 0.96448 0.95414 0.91109 1.21955 1.00814 0.93753 1.03104 1.21614 1.01471 0.93235 0.97886 1.21877 0.99991 0.96796 0.97458 1.19745 0.99510 0.80052 0.92551 0.91099 1.46185 1.14418 1.10236 1.65249 1.22304 0.85631 0.88862 0.75394 1.90642 1.19974 1.80981 1.53888 1.21632 0.98440 0.87043 0.95903 0.87576 1.58973 1.12707 1.57125 1.05864 1.21378 1.00321 0.96610 0.93563 1.18822 0.94461 0.91227 0.95242 1.21735 1.41396 0.99073 0.95915 0.92561 1.25910 0.95098 0.99017 0.99638 1.70106 1.43613 1.14981 1.28377 0.85533 0.77697 0.78470 0.79844 1.20226 1.20754 1.18670 1.20017 1.00617 0.94988 0.94902 1.21535 0.99321 1.00557 0.93415 1.21287 1.00987 0.95867 0.97810 1.21388 0.98323 0.94798 0.99325 1.21465 1.00395 1.00788 0.91734 1.19766 0.97568 0.92584 0.96063 0.90596 0.92953 0.92251 0.91456 0.93268 0.90744 0.88639 0.92041 0.90078 0.89589 0.75029 0.84094 0.84201 0.91342 0.93902 0.97708 0.98826 0.92938 0.87462 0.85681 0.83912 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.17 71.98 0.59 -0.94 16 2 C -0.02 -0.33 0.63 -53.04 -0.03 -0.36 16 3 C -0.14 -1.44 7.96 71.98 0.57 -0.87 16 4 C -0.10 -1.39 4.68 30.59 0.14 -1.24 16 5 C -0.12 -1.99 5.39 30.59 0.16 -1.83 16 6 C 0.19 4.27 2.59 44.13 0.11 4.38 16 7 H 0.07 1.98 7.55 -2.38 -0.02 1.97 16 8 N -0.71 -17.48 4.83 -446.63 -2.16 -19.63 16 9 C 0.49 15.18 5.57 87.66 0.49 15.66 16 10 O -0.57 -20.78 14.11 -3.02 -0.04 -20.82 16 11 C 0.09 2.87 3.15 44.17 0.14 3.01 16 12 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 13 N -0.82 -28.12 8.44 -171.81 -1.45 -29.57 16 14 C -0.08 -3.24 4.78 30.59 0.15 -3.09 16 15 C 0.04 2.07 4.86 29.85 0.15 2.22 16 16 C -0.54 -30.91 9.11 25.60 0.23 -30.67 16 17 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 18 C 0.00 0.06 5.46 84.66 0.46 0.53 16 19 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 20 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 24 C -0.10 -2.46 5.55 -19.86 -0.11 -2.57 16 25 C -0.13 -3.49 9.02 22.36 0.20 -3.29 16 26 C -0.14 -3.23 10.05 22.20 0.22 -3.01 16 27 C -0.12 -2.21 10.05 22.21 0.22 -1.99 16 28 C -0.13 -2.14 8.90 22.36 0.20 -1.95 16 29 C -0.06 -1.11 4.71 -19.86 -0.09 -1.20 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.67 6.45 -2.39 -0.02 0.66 16 32 H 0.06 0.64 8.06 -2.39 -0.02 0.62 16 33 H 0.07 0.59 6.38 -2.38 -0.02 0.57 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.10 0.90 8.12 -2.39 -0.02 0.88 16 37 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.24 6.27 -2.39 -0.01 1.23 16 40 H 0.41 8.55 8.60 -92.71 -0.80 7.75 16 41 H 0.35 12.14 8.58 -89.69 -0.77 11.37 16 42 H 0.34 10.30 9.06 -89.70 -0.81 9.48 16 43 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 46 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 47 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 48 H 0.11 3.33 4.49 -2.91 -0.01 3.32 16 49 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 50 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 51 H 0.15 1.70 6.32 -2.91 -0.02 1.68 16 Total: -1.00 -70.63 395.17 1.04 -69.59 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -1.43 Total: 37.86 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 3.81 Total: -27.21 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -3.32 Total: -105.95 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.04 Total: -20.82 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -70.63 1.04 -69.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111066.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.888 kcal (2) G-P(sol) polarization free energy of solvation -70.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds