Wall clock time and date at job start Tue Mar 31 2020 15:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.24579 * 2 1 4 4 C 1.52737 * 109.25012 * 240.53813 * 2 1 3 5 5 C 1.53248 * 108.42902 * 290.76583 * 4 2 1 6 6 C 1.52736 * 108.35163 * 290.07601 * 5 4 2 7 7 H 1.08994 * 109.25727 * 290.82488 * 6 5 4 8 8 N 1.46506 * 109.22343 * 171.37447 * 6 5 4 9 9 C 1.34774 * 120.00195 * 153.93159 * 8 6 5 10 10 O 1.21289 * 119.99677 * 359.97438 * 9 8 6 11 11 C 1.50693 * 120.00253 * 180.02562 * 9 8 6 12 12 H 1.09002 * 109.47122 * 39.99342 * 11 9 8 13 13 N 1.46902 * 109.47568 * 160.00014 * 11 9 8 14 14 C 1.53008 * 109.47180 * 279.99881 * 11 9 8 15 15 C 1.52997 * 109.47332 * 175.00284 * 14 11 9 16 16 C 1.50703 * 109.46816 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00321 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99633 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00320 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99986 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46904 * 90.00096 * 20 18 16 22 22 H 1.48501 * 109.47303 * 209.99644 * 20 18 16 23 23 H 1.48494 * 109.47014 * 330.00237 * 20 18 16 24 24 C 1.50631 * 110.57927 * 51.11394 * 6 5 4 25 25 C 1.38905 * 117.74767 * 162.47122 * 24 6 5 26 26 C 1.37935 * 120.54796 * 179.71015 * 25 24 6 27 27 C 1.38265 * 119.76896 * 359.97438 * 26 25 24 28 28 C 1.37932 * 119.77119 * 0.10671 * 27 26 25 29 29 C 1.37669 * 122.56747 * 342.35571 * 24 6 5 30 30 H 1.09001 * 109.46801 * 60.00011 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99899 * 1 2 3 33 33 H 1.09003 * 109.46942 * 59.99832 * 3 2 1 34 34 H 1.08997 * 109.46747 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47145 * 299.99995 * 3 2 1 36 36 H 1.08993 * 109.68374 * 50.46632 * 4 2 1 37 37 H 1.09000 * 109.67833 * 171.01448 * 4 2 1 38 38 H 1.08998 * 109.69504 * 170.35765 * 5 4 2 39 39 H 1.09004 * 109.68808 * 49.78760 * 5 4 2 40 40 H 0.96998 * 119.99956 * 333.92692 * 8 6 5 41 41 H 1.00904 * 110.99469 * 296.04820 * 13 11 9 42 42 H 1.00897 * 111.00194 * 59.99264 * 13 11 9 43 43 H 1.09000 * 109.46562 * 295.00258 * 14 11 9 44 44 H 1.08998 * 109.47114 * 54.99469 * 14 11 9 45 45 H 1.09005 * 109.46589 * 299.99618 * 15 14 11 46 46 H 1.08991 * 109.47303 * 59.99599 * 15 14 11 47 47 H 0.96994 * 120.00309 * 180.02562 * 19 18 16 48 48 H 1.08002 * 119.72972 * 359.68847 * 25 24 6 49 49 H 1.07997 * 120.11862 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.11685 * 180.13027 * 27 26 25 51 51 H 1.08000 * 119.72485 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0344 1.4446 0.0000 4 6 2.0336 -0.7092 -1.2555 5 6 1.7067 -2.2014 -1.1331 6 6 2.5978 -2.8014 -0.0473 7 1 3.6300 -2.8159 -0.3968 8 7 2.1626 -4.1725 0.2307 9 6 3.0397 -5.0720 0.7185 10 8 4.1894 -4.7466 0.9270 11 6 2.5923 -6.4824 1.0039 12 1 1.9198 -6.8171 0.2141 13 7 3.7641 -7.3667 1.0568 14 6 1.8613 -6.5236 2.3475 15 6 1.2990 -7.9275 2.5794 16 6 0.5785 -7.9677 3.9024 17 1 0.5272 -7.0809 4.5166 18 6 -0.0152 -9.1368 4.3287 19 7 0.0469 -10.2167 3.5805 20 14 -0.9076 -9.1871 5.9689 21 1 -2.3344 -8.8279 5.7673 22 1 -0.8175 -10.5550 6.5399 23 1 -0.2806 -8.2182 6.9034 24 6 2.5128 -1.9873 1.2172 25 6 2.9492 -2.5771 2.3966 26 6 2.9030 -1.8819 3.5871 27 6 2.4188 -0.5870 3.6074 28 6 1.9833 -0.0001 2.4376 29 6 2.0267 -0.6994 1.2381 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6690 1.9569 0.8900 34 1 3.1244 1.4488 -0.0005 35 1 1.6690 1.9570 -0.8900 36 1 1.5380 -0.2965 -2.1341 37 1 3.1117 -0.5757 -1.3450 38 1 1.9001 -2.6990 -2.0834 39 1 0.6591 -2.3266 -0.8590 40 1 1.2433 -4.4328 0.0637 41 1 4.2274 -7.4070 0.1613 42 1 4.4033 -7.0771 1.7818 43 1 2.5580 -6.2745 3.1478 44 1 1.0446 -5.8018 2.3390 45 1 0.6023 -8.1765 1.7789 46 1 2.1157 -8.6492 2.5878 47 1 -0.3711 -11.0391 3.8802 48 1 3.3277 -3.5885 2.3816 49 1 3.2437 -2.3473 4.5001 50 1 2.3820 -0.0367 4.5360 51 1 1.6048 1.0113 2.4544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424111073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:06 Heat of formation + Delta-G solvation = -37.668806 kcal Electronic energy + Delta-G solvation = -29166.652331 eV Core-core repulsion = 25450.280212 eV Total energy + Delta-G solvation = -3716.372119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.06678 -39.48764 -36.98106 -35.76454 -35.02464 -32.80241 -32.00680 -30.38213 -30.12442 -29.91835 -27.56889 -27.00141 -25.57897 -23.48801 -23.09815 -22.91479 -21.01511 -20.60671 -19.75907 -18.91082 -17.17811 -16.95418 -16.41139 -15.99743 -15.71771 -15.39867 -15.28772 -14.76497 -14.42650 -14.37773 -14.14281 -14.03358 -13.76161 -13.40440 -13.17052 -12.85378 -12.80279 -12.36115 -12.27191 -12.24741 -12.03742 -11.98375 -11.92029 -11.57509 -11.51374 -11.42219 -10.92159 -10.89286 -10.65962 -10.57373 -10.52652 -10.46698 -10.12600 -9.80327 -9.37221 -9.12394 -8.99482 -8.71591 -8.65042 -8.34358 -8.20023 -5.93571 -3.95620 1.32522 1.42489 2.73029 3.24563 3.34717 3.41258 3.44837 3.79837 4.28681 4.36547 4.50303 4.54216 4.65101 4.71445 4.87861 4.98909 5.01889 5.07512 5.14304 5.18884 5.22141 5.33633 5.37158 5.41991 5.47521 5.51464 5.54646 5.55264 5.60273 5.63683 5.73473 5.81861 5.82287 5.85178 5.96053 6.03770 6.08483 6.13719 6.39973 6.44874 6.50727 6.59853 6.64554 6.70416 7.03164 7.08946 7.37011 7.59323 7.76255 7.79413 7.96314 8.13243 8.29307 8.48757 9.12379 9.67566 11.17331 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.003101 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.699304 B = 9027.822087 C = 9829.522218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.105 4.105 5 C -0.128 4.128 6 C 0.185 3.815 7 H 0.094 0.906 8 N -0.723 5.723 9 C 0.484 3.516 10 O -0.551 6.551 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.807 5.807 14 C -0.094 4.094 15 C 0.032 3.968 16 C -0.522 4.522 17 H 0.052 0.948 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.091 4.091 25 C -0.101 4.101 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.127 4.127 29 C -0.061 4.061 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.404 0.596 41 H 0.334 0.666 42 H 0.347 0.653 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.012 0.988 46 H 0.035 0.965 47 H 0.259 0.741 48 H 0.133 0.867 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 23.062 -10.777 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.166 4.166 6 C 0.080 3.920 7 H 0.112 0.888 8 N -0.375 5.375 9 C 0.270 3.730 10 O -0.429 6.429 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.334 5.334 14 C -0.133 4.133 15 C -0.005 4.005 16 C -0.560 4.560 17 H 0.070 0.930 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.093 4.093 25 C -0.119 4.119 26 C -0.142 4.142 27 C -0.136 4.136 28 C -0.145 4.145 29 C -0.062 4.062 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.238 0.762 41 H 0.145 0.855 42 H 0.162 0.838 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.150 0.850 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.476 22.488 -10.454 25.042 hybrid contribution -0.424 0.695 0.804 1.144 sum 3.053 23.183 -9.650 25.296 Atomic orbital electron populations 1.21950 0.93537 1.02329 1.01831 1.19433 0.95806 0.94914 0.92333 1.21961 1.01292 0.94655 1.01883 1.21580 1.01585 0.94130 0.97021 1.21870 1.00341 0.96100 0.98273 1.19686 0.99874 0.80721 0.91683 0.88785 1.46309 1.14325 1.10163 1.66675 1.22781 0.85744 0.89537 0.74908 1.90652 1.19126 1.80758 1.52348 1.21860 0.94837 0.84847 1.02283 0.88429 1.58996 1.11638 1.52510 1.10282 1.21654 0.97639 1.02593 0.91393 1.19006 0.96009 0.89552 0.95947 1.21276 1.34019 0.96199 1.04521 0.93009 1.24986 0.96506 0.95773 0.97038 1.69973 1.44757 1.01036 1.37436 0.86662 0.80070 0.77232 0.84428 1.20780 1.21257 1.19966 1.19905 1.00027 0.93953 0.95371 1.21599 0.97372 1.00997 0.91914 1.21148 1.00091 0.94826 0.98181 1.21079 0.99177 0.95446 0.97936 1.21089 1.01397 0.99773 0.92211 1.19422 0.98858 0.93381 0.94537 0.92314 0.92136 0.92454 0.92227 0.92443 0.92353 0.90853 0.91316 0.90700 0.90498 0.76153 0.85452 0.83847 0.92927 0.92837 0.96917 0.94675 0.93107 0.84971 0.86171 0.86365 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.17 37.16 0.30 -0.77 16 2 C -0.02 -0.21 0.63 -155.82 -0.10 -0.30 16 3 C -0.14 -1.00 7.97 37.16 0.30 -0.70 16 4 C -0.11 -0.80 4.68 -26.74 -0.13 -0.93 16 5 C -0.13 -1.08 5.39 -26.74 -0.14 -1.22 16 6 C 0.19 2.14 2.59 -69.25 -0.18 1.96 16 7 H 0.09 1.23 7.55 -51.93 -0.39 0.84 16 8 N -0.72 -8.90 4.82 -55.10 -0.27 -9.16 16 9 C 0.48 7.29 5.57 -10.99 -0.06 7.23 16 10 O -0.55 -9.60 14.10 5.55 0.08 -9.52 16 11 C 0.08 1.27 3.15 -68.86 -0.22 1.05 16 12 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 13 N -0.81 -13.37 8.44 -5.65 -0.05 -13.42 16 14 C -0.09 -1.89 4.78 -26.73 -0.13 -2.01 16 15 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 16 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.09 -1.17 5.55 -104.62 -0.58 -1.76 16 25 C -0.10 -1.50 9.02 -39.45 -0.36 -1.86 16 26 C -0.12 -1.69 10.05 -39.68 -0.40 -2.09 16 27 C -0.12 -1.38 10.05 -39.68 -0.40 -1.78 16 28 C -0.13 -1.38 8.89 -39.44 -0.35 -1.73 16 29 C -0.06 -0.68 4.70 -104.62 -0.49 -1.17 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.51 6.45 -51.93 -0.34 0.17 16 32 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 33 H 0.06 0.40 6.38 -51.93 -0.33 0.07 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 37 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.63 6.27 -51.93 -0.33 0.30 16 40 H 0.40 4.31 8.60 -40.82 -0.35 3.96 16 41 H 0.33 4.79 9.06 -39.29 -0.36 4.44 16 42 H 0.35 5.85 8.58 -39.29 -0.34 5.52 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.13 2.23 4.49 -52.49 -0.24 2.00 16 49 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 51 H 0.12 1.04 6.33 -52.49 -0.33 0.71 16 LS Contribution 395.16 15.07 5.96 5.96 Total: -1.00 -32.28 395.16 -10.47 -42.75 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -8.43 Total: 11.70 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -3.48 Total: -18.90 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.42 Total: -48.78 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.28 -10.47 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.078 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds