Wall clock time and date at job start Tue Mar 31 2020 15:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.24579 * 2 1 4 4 C 1.52737 * 109.25012 * 240.53813 * 2 1 3 5 5 C 1.53248 * 108.42902 * 290.76583 * 4 2 1 6 6 C 1.52736 * 108.35163 * 290.07601 * 5 4 2 7 7 H 1.08994 * 109.25727 * 290.82488 * 6 5 4 8 8 N 1.46506 * 109.22343 * 171.37447 * 6 5 4 9 9 C 1.34774 * 120.00195 * 153.93159 * 8 6 5 10 10 O 1.21289 * 119.99677 * 359.97438 * 9 8 6 11 11 C 1.50693 * 120.00253 * 180.02562 * 9 8 6 12 12 H 1.09002 * 109.47122 * 39.99342 * 11 9 8 13 13 N 1.46902 * 109.47568 * 160.00014 * 11 9 8 14 14 C 1.53008 * 109.47180 * 279.99881 * 11 9 8 15 15 C 1.52997 * 109.47332 * 175.00284 * 14 11 9 16 16 C 1.50703 * 109.46816 * 180.02562 * 15 14 11 17 17 H 1.07995 * 120.00321 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99633 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00320 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99986 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46904 * 90.00096 * 20 18 16 22 22 H 1.48501 * 109.47303 * 209.99644 * 20 18 16 23 23 H 1.48494 * 109.47014 * 330.00237 * 20 18 16 24 24 C 1.50631 * 110.57927 * 51.11394 * 6 5 4 25 25 C 1.38905 * 117.74767 * 162.47122 * 24 6 5 26 26 C 1.37935 * 120.54796 * 179.71015 * 25 24 6 27 27 C 1.38265 * 119.76896 * 359.97438 * 26 25 24 28 28 C 1.37932 * 119.77119 * 0.10671 * 27 26 25 29 29 C 1.37669 * 122.56747 * 342.35571 * 24 6 5 30 30 H 1.09001 * 109.46801 * 60.00011 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99899 * 1 2 3 33 33 H 1.09003 * 109.46942 * 59.99832 * 3 2 1 34 34 H 1.08997 * 109.46747 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47145 * 299.99995 * 3 2 1 36 36 H 1.08993 * 109.68374 * 50.46632 * 4 2 1 37 37 H 1.09000 * 109.67833 * 171.01448 * 4 2 1 38 38 H 1.08998 * 109.69504 * 170.35765 * 5 4 2 39 39 H 1.09004 * 109.68808 * 49.78760 * 5 4 2 40 40 H 0.96998 * 119.99956 * 333.92692 * 8 6 5 41 41 H 1.00904 * 110.99469 * 296.04820 * 13 11 9 42 42 H 1.00897 * 111.00194 * 59.99264 * 13 11 9 43 43 H 1.09000 * 109.46562 * 295.00258 * 14 11 9 44 44 H 1.08998 * 109.47114 * 54.99469 * 14 11 9 45 45 H 1.09005 * 109.46589 * 299.99618 * 15 14 11 46 46 H 1.08991 * 109.47303 * 59.99599 * 15 14 11 47 47 H 0.96994 * 120.00309 * 180.02562 * 19 18 16 48 48 H 1.08002 * 119.72972 * 359.68847 * 25 24 6 49 49 H 1.07997 * 120.11862 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.11685 * 180.13027 * 27 26 25 51 51 H 1.08000 * 119.72485 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0344 1.4446 0.0000 4 6 2.0336 -0.7092 -1.2555 5 6 1.7067 -2.2014 -1.1331 6 6 2.5978 -2.8014 -0.0473 7 1 3.6300 -2.8159 -0.3968 8 7 2.1626 -4.1725 0.2307 9 6 3.0397 -5.0720 0.7185 10 8 4.1894 -4.7466 0.9270 11 6 2.5923 -6.4824 1.0039 12 1 1.9198 -6.8171 0.2141 13 7 3.7641 -7.3667 1.0568 14 6 1.8613 -6.5236 2.3475 15 6 1.2990 -7.9275 2.5794 16 6 0.5785 -7.9677 3.9024 17 1 0.5272 -7.0809 4.5166 18 6 -0.0152 -9.1368 4.3287 19 7 0.0469 -10.2167 3.5805 20 14 -0.9076 -9.1871 5.9689 21 1 -2.3344 -8.8279 5.7673 22 1 -0.8175 -10.5550 6.5399 23 1 -0.2806 -8.2182 6.9034 24 6 2.5128 -1.9873 1.2172 25 6 2.9492 -2.5771 2.3966 26 6 2.9030 -1.8819 3.5871 27 6 2.4188 -0.5870 3.6074 28 6 1.9833 -0.0001 2.4376 29 6 2.0267 -0.6994 1.2381 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6690 1.9569 0.8900 34 1 3.1244 1.4488 -0.0005 35 1 1.6690 1.9570 -0.8900 36 1 1.5380 -0.2965 -2.1341 37 1 3.1117 -0.5757 -1.3450 38 1 1.9001 -2.6990 -2.0834 39 1 0.6591 -2.3266 -0.8590 40 1 1.2433 -4.4328 0.0637 41 1 4.2274 -7.4070 0.1613 42 1 4.4033 -7.0771 1.7818 43 1 2.5580 -6.2745 3.1478 44 1 1.0446 -5.8018 2.3390 45 1 0.6023 -8.1765 1.7789 46 1 2.1157 -8.6492 2.5878 47 1 -0.3711 -11.0391 3.8802 48 1 3.3277 -3.5885 2.3816 49 1 3.2437 -2.3473 4.5001 50 1 2.3820 -0.0367 4.5360 51 1 1.6048 1.0113 2.4544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424111073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:05 Heat of formation + Delta-G solvation = -57.822193 kcal Electronic energy + Delta-G solvation = -29167.526247 eV Core-core repulsion = 25450.280212 eV Total energy + Delta-G solvation = -3717.246035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.01007 -40.61175 -37.80121 -37.01899 -36.34871 -34.82430 -32.95671 -31.94494 -31.23541 -30.82533 -28.42302 -28.10526 -26.89597 -25.04071 -23.97578 -23.78011 -22.46895 -21.74895 -21.11829 -19.69896 -18.66661 -18.06311 -17.93335 -17.32761 -16.82808 -16.49861 -16.41344 -16.18501 -15.85537 -15.27587 -15.20496 -15.07350 -14.75214 -14.48663 -14.29792 -14.09507 -13.87169 -13.68728 -13.48966 -13.41931 -13.05910 -12.88685 -12.81097 -12.69373 -12.59562 -12.52419 -12.36246 -12.25314 -12.19466 -11.76641 -11.68432 -11.53098 -11.31113 -11.25311 -11.20039 -10.99374 -10.50169 -10.19817 -9.70779 -9.64003 -9.52151 -8.15057 -6.25262 0.38363 0.45527 1.39943 1.41429 1.48350 1.52540 2.16620 2.43392 2.84389 3.17802 3.52840 3.57874 3.62322 3.79867 3.87037 3.89900 4.02183 4.09500 4.18580 4.21454 4.29983 4.35069 4.38676 4.48130 4.58814 4.63489 4.75562 4.78641 4.86206 4.89285 4.92070 4.98217 5.02483 5.07984 5.12261 5.16018 5.17696 5.22908 5.26332 5.36177 5.40830 5.55326 5.55716 5.60958 5.65573 5.74691 5.83015 5.97273 6.08227 6.10217 6.29416 6.43754 6.52954 6.93007 7.13144 7.42757 8.96131 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.003101 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.699304 B = 9027.822087 C = 9829.522218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.139 4.139 4 C -0.103 4.103 5 C -0.121 4.121 6 C 0.187 3.813 7 H 0.076 0.924 8 N -0.710 5.710 9 C 0.492 3.508 10 O -0.575 6.575 11 C 0.085 3.915 12 H 0.111 0.889 13 N -0.818 5.818 14 C -0.078 4.078 15 C 0.041 3.959 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.958 3.042 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.268 1.268 24 C -0.104 4.104 25 C -0.130 4.130 26 C -0.146 4.146 27 C -0.121 4.121 28 C -0.126 4.126 29 C -0.060 4.060 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.413 0.587 41 H 0.347 0.653 42 H 0.344 0.656 43 H 0.038 0.962 44 H 0.062 0.938 45 H -0.005 1.005 46 H 0.006 0.994 47 H 0.262 0.738 48 H 0.105 0.895 49 H 0.117 0.883 50 H 0.141 0.859 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.666 25.761 -11.542 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 C -0.196 4.196 4 C -0.141 4.141 5 C -0.159 4.159 6 C 0.082 3.918 7 H 0.094 0.906 8 N -0.361 5.361 9 C 0.277 3.723 10 O -0.455 6.455 11 C -0.031 4.031 12 H 0.129 0.871 13 N -0.347 5.347 14 C -0.117 4.117 15 C 0.004 3.996 16 C -0.582 4.582 17 H 0.071 0.929 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.783 3.217 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.105 4.105 25 C -0.148 4.148 26 C -0.164 4.164 27 C -0.139 4.139 28 C -0.144 4.144 29 C -0.061 4.061 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.250 0.750 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.013 0.987 46 H 0.025 0.975 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.135 0.865 50 H 0.159 0.841 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.912 25.210 -11.243 27.669 hybrid contribution 0.076 -0.116 1.039 1.048 sum 1.988 25.093 -10.204 27.161 Atomic orbital electron populations 1.21946 0.92671 1.02076 1.02799 1.19513 0.96344 0.95440 0.91112 1.21955 1.00849 0.93741 1.03073 1.21614 1.01585 0.93260 0.97661 1.21878 0.99812 0.96765 0.97455 1.19785 0.99787 0.79919 0.92298 0.90592 1.46196 1.14297 1.10301 1.65293 1.22309 0.85639 0.89213 0.75090 1.90645 1.20312 1.80967 1.53573 1.21640 0.94767 0.86164 1.00500 0.87131 1.58972 1.11801 1.52811 1.11091 1.21344 0.97738 0.99362 0.93209 1.18807 0.94443 0.91901 0.94440 1.21710 1.34364 0.96437 1.05701 0.92917 1.25879 0.97327 0.95348 1.00923 1.70099 1.45705 1.01671 1.39408 0.85561 0.79078 0.77408 0.79678 1.19577 1.20793 1.19253 1.20054 1.00427 0.95021 0.94969 1.21552 0.99323 1.00393 0.93556 1.21269 1.01267 0.96053 0.97805 1.21358 0.98430 0.94654 0.99445 1.21461 1.00378 1.00824 0.91719 1.19812 0.97475 0.92635 0.96132 0.90321 0.93000 0.92575 0.91728 0.93187 0.90537 0.88364 0.91840 0.89361 0.89808 0.75029 0.83963 0.84222 0.94275 0.91978 0.98698 0.97548 0.92884 0.87667 0.86496 0.84146 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.17 71.98 0.59 -1.07 16 2 C -0.02 -0.33 0.63 -53.03 -0.03 -0.36 16 3 C -0.14 -1.50 7.97 71.98 0.57 -0.93 16 4 C -0.10 -1.27 4.68 30.59 0.14 -1.13 16 5 C -0.12 -1.78 5.39 30.59 0.16 -1.62 16 6 C 0.19 4.21 2.59 44.13 0.11 4.33 16 7 H 0.08 2.01 7.55 -2.39 -0.02 1.99 16 8 N -0.71 -17.34 4.82 -446.62 -2.15 -19.49 16 9 C 0.49 15.13 5.57 87.66 0.49 15.62 16 10 O -0.57 -20.78 14.10 -3.06 -0.04 -20.82 16 11 C 0.09 2.84 3.15 44.17 0.14 2.98 16 12 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.82 -27.97 8.44 -171.79 -1.45 -29.42 16 14 C -0.08 -3.22 4.78 30.60 0.15 -3.07 16 15 C 0.04 2.17 4.86 29.85 0.15 2.32 16 16 C -0.54 -31.36 9.11 25.60 0.23 -31.12 16 17 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 20 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C -0.10 -2.64 5.55 -19.86 -0.11 -2.75 16 25 C -0.13 -4.03 9.02 22.36 0.20 -3.82 16 26 C -0.15 -4.09 10.05 22.20 0.22 -3.87 16 27 C -0.12 -2.71 10.05 22.20 0.22 -2.49 16 28 C -0.13 -2.49 8.89 22.36 0.20 -2.29 16 29 C -0.06 -1.23 4.70 -19.86 -0.09 -1.33 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.72 6.45 -2.39 -0.02 0.71 16 32 H 0.06 0.69 8.06 -2.39 -0.02 0.68 16 33 H 0.06 0.63 6.38 -2.39 -0.02 0.62 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.10 0.78 8.12 -2.39 -0.02 0.76 16 37 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.15 6.27 -2.39 -0.01 1.14 16 40 H 0.41 8.46 8.60 -92.71 -0.80 7.66 16 41 H 0.35 10.13 9.06 -89.69 -0.81 9.32 16 42 H 0.34 12.14 8.58 -89.70 -0.77 11.37 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 45 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 46 H 0.01 0.35 7.75 -2.39 -0.02 0.34 16 47 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.11 3.79 4.49 -2.91 -0.01 3.78 16 49 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 50 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 51 H 0.15 2.06 6.33 -2.91 -0.02 2.04 16 Total: -1.00 -71.54 395.16 1.05 -70.50 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -1.43 Total: 38.93 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 3.81 Total: -29.97 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -3.32 Total: -105.60 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.04 Total: -20.82 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.54 1.05 -70.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.676 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds