Wall clock time and date at job start Tue Mar 31 2020 15:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.25626 * 2 1 4 4 C 1.52744 * 109.25502 * 119.47743 * 2 1 3 5 5 C 1.53329 * 108.37023 * 69.18080 * 4 2 1 6 6 C 1.52732 * 108.38613 * 69.91570 * 5 4 2 7 7 H 1.09005 * 109.24621 * 69.25831 * 6 5 4 8 8 N 1.46494 * 109.25290 * 188.67982 * 6 5 4 9 9 C 1.34773 * 120.00310 * 205.00233 * 8 6 5 10 10 O 1.21287 * 119.99823 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00116 * 180.02562 * 9 8 6 12 12 H 1.08988 * 109.47506 * 320.00192 * 11 9 8 13 13 N 1.46905 * 109.47217 * 199.99930 * 11 9 8 14 14 C 1.52998 * 109.47004 * 80.00596 * 11 9 8 15 15 C 1.53004 * 109.47287 * 185.00036 * 14 11 9 16 16 C 1.50699 * 109.47226 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00318 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99806 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99718 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46681 * 90.00247 * 20 18 16 22 22 H 1.48494 * 109.46927 * 210.00048 * 20 18 16 23 23 H 1.48490 * 109.47318 * 330.00281 * 20 18 16 24 24 C 1.50630 * 110.59524 * 308.97431 * 6 5 4 25 25 C 1.38917 * 117.74765 * 197.45688 * 24 6 5 26 26 C 1.37710 * 120.59626 * 180.21596 * 25 24 6 27 27 C 1.38264 * 119.75565 * 0.03895 * 26 25 24 28 28 C 1.37929 * 119.77042 * 359.86420 * 27 26 25 29 29 C 1.37589 * 122.54960 * 17.50081 * 24 6 5 30 30 H 1.09002 * 109.47153 * 59.99728 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99919 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47086 * 60.00084 * 3 2 1 34 34 H 1.09002 * 109.47696 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47222 * 300.00400 * 3 2 1 36 36 H 1.09004 * 109.68358 * 188.90260 * 4 2 1 37 37 H 1.09000 * 109.68341 * 309.45464 * 4 2 1 38 38 H 1.08996 * 109.68121 * 189.64726 * 5 4 2 39 39 H 1.09002 * 109.67895 * 310.19633 * 5 4 2 40 40 H 0.97007 * 119.99747 * 25.00150 * 8 6 5 41 41 H 1.00901 * 110.99686 * 300.00664 * 13 11 9 42 42 H 1.00899 * 110.99460 * 63.95208 * 13 11 9 43 43 H 1.09009 * 109.46664 * 304.99378 * 14 11 9 44 44 H 1.09000 * 109.47904 * 64.99481 * 14 11 9 45 45 H 1.09000 * 109.46584 * 299.99584 * 15 14 11 46 46 H 1.08995 * 109.47097 * 59.99429 * 15 14 11 47 47 H 0.97001 * 120.00039 * 179.97438 * 19 18 16 48 48 H 1.07995 * 119.72441 * 0.24352 * 25 24 6 49 49 H 1.08003 * 120.13087 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.11342 * 179.89168 * 27 26 25 51 51 H 1.08002 * 119.73137 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0337 -0.7096 1.2553 5 6 1.7048 -2.2021 1.1316 6 6 2.5942 -2.8029 0.0451 7 1 3.6265 -2.8205 0.3948 8 7 2.1565 -4.1727 -0.2347 9 6 3.0263 -5.0674 -0.7440 10 8 4.1716 -4.7386 -0.9703 11 6 2.5758 -6.4762 -1.0324 12 1 1.9173 -6.8178 -0.2339 13 7 3.7478 -7.3585 -1.1116 14 6 1.8225 -6.5084 -2.3636 15 6 1.2579 -7.9112 -2.5965 16 6 0.5153 -7.9427 -3.9074 17 1 0.4527 -7.0514 -4.5141 18 6 -0.0832 -9.1097 -4.3328 19 7 -0.0064 -10.1952 -3.5943 20 14 -1.0030 -9.1489 -5.9582 21 1 -0.0666 -9.5243 -7.0480 22 1 -2.0998 -10.1470 -5.8823 23 1 -1.5737 -7.8065 -6.2365 24 6 2.5117 -1.9871 -1.2184 25 6 2.9481 -2.5763 -2.3984 26 6 2.9031 -1.8821 -3.5868 27 6 2.4201 -0.5867 -3.6071 28 6 1.9842 0.0000 -2.4374 29 6 2.0267 -0.6997 -1.2380 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6693 1.9568 0.8900 34 1 3.1246 1.4486 0.0005 35 1 1.6692 1.9569 -0.8900 36 1 3.1120 -0.5773 1.3441 37 1 1.5391 -0.2961 2.1342 38 1 1.8979 -2.7005 2.0815 39 1 0.6569 -2.3256 0.8581 40 1 1.2406 -4.4357 -0.0534 41 1 4.3742 -7.0625 -1.8452 42 1 4.2261 -7.4048 -0.2244 43 1 1.0050 -5.7878 -2.3359 44 1 2.5052 -6.2523 -3.1739 45 1 2.0754 -8.6318 -2.6241 46 1 0.5752 -8.1672 -1.7863 47 1 -0.4278 -11.0161 -3.8935 48 1 3.3258 -3.5879 -2.3840 49 1 3.2448 -2.3473 -4.4997 50 1 2.3839 -0.0364 -4.5356 51 1 1.6067 1.0117 -2.4539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424111075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:10 Heat of formation + Delta-G solvation = -36.902414 kcal Electronic energy + Delta-G solvation = -29178.484439 eV Core-core repulsion = 25462.145554 eV Total energy + Delta-G solvation = -3716.338886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.07681 -39.49182 -36.98790 -35.76376 -35.02552 -32.80402 -32.00607 -30.37789 -30.12679 -29.92033 -27.56761 -27.00193 -25.57996 -23.48728 -23.10005 -22.91182 -21.01683 -20.60373 -19.75774 -18.90869 -17.17397 -16.96216 -16.41481 -15.99944 -15.71840 -15.39755 -15.28184 -14.77729 -14.42768 -14.38445 -14.14269 -14.03295 -13.76008 -13.40728 -13.16141 -12.84195 -12.79751 -12.35984 -12.27112 -12.24532 -12.03657 -11.98325 -11.91698 -11.57866 -11.51245 -11.41607 -10.91903 -10.89643 -10.66232 -10.57028 -10.52415 -10.45589 -10.12951 -9.80067 -9.37080 -9.11801 -8.99802 -8.71255 -8.64972 -8.34427 -8.20011 -5.93606 -3.95615 1.33033 1.43460 2.72575 3.24508 3.35100 3.41320 3.44429 3.80614 4.28796 4.36759 4.50288 4.54214 4.65425 4.71464 4.87787 4.99046 5.02254 5.07513 5.14665 5.18996 5.22284 5.33803 5.37481 5.41996 5.47831 5.51482 5.54703 5.55375 5.60670 5.63955 5.73684 5.82152 5.82339 5.85180 5.96491 6.04237 6.09071 6.13945 6.40134 6.44925 6.51219 6.60874 6.64568 6.71036 7.03923 7.08932 7.36878 7.59154 7.76278 7.79347 7.96243 8.13204 8.29005 8.48778 9.12374 9.67559 11.17299 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.003104 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.196828 B = 9018.265543 C = 9804.221672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.105 4.105 5 C -0.128 4.128 6 C 0.185 3.815 7 H 0.094 0.906 8 N -0.723 5.723 9 C 0.484 3.516 10 O -0.550 6.550 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.807 5.807 14 C -0.094 4.094 15 C 0.032 3.968 16 C -0.522 4.522 17 H 0.052 0.948 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.091 4.091 25 C -0.102 4.102 26 C -0.125 4.125 27 C -0.118 4.118 28 C -0.127 4.127 29 C -0.062 4.062 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.404 0.596 41 H 0.347 0.653 42 H 0.334 0.666 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.013 0.987 47 H 0.259 0.741 48 H 0.134 0.866 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 22.955 10.853 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.166 4.166 6 C 0.081 3.919 7 H 0.111 0.889 8 N -0.375 5.375 9 C 0.270 3.730 10 O -0.429 6.429 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.334 5.334 14 C -0.133 4.133 15 C -0.005 4.005 16 C -0.560 4.560 17 H 0.070 0.930 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.092 4.092 25 C -0.120 4.120 26 C -0.143 4.143 27 C -0.136 4.136 28 C -0.145 4.145 29 C -0.062 4.062 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.239 0.761 41 H 0.162 0.838 42 H 0.146 0.854 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.152 0.848 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.647 22.386 10.526 25.005 hybrid contribution -0.415 0.699 -0.803 1.143 sum 3.231 23.085 9.723 25.257 Atomic orbital electron populations 1.21949 0.93537 1.02332 1.01831 1.19432 0.95806 0.94909 0.92335 1.21959 1.01289 0.94660 1.01882 1.21597 1.01577 0.94110 0.97024 1.21880 1.00351 0.96108 0.98247 1.19682 0.99811 0.80749 0.91700 0.88858 1.46311 1.14882 1.10393 1.65872 1.22779 0.85673 0.89523 0.74985 1.90648 1.19339 1.80507 1.52364 1.21858 0.94797 0.84896 1.02270 0.88427 1.58997 1.11717 1.52408 1.10306 1.21655 0.97445 1.02602 0.91579 1.19006 0.95979 0.89560 0.95967 1.21277 1.33331 0.96063 1.05356 0.93011 1.24985 0.96545 0.95766 0.97000 1.69971 1.44756 1.00855 1.37610 0.86663 0.79602 0.77703 0.84432 1.20717 1.21284 1.19997 1.19886 1.00047 0.93949 0.95365 1.21610 0.97318 1.01170 0.91907 1.21098 1.00118 0.94828 0.98215 1.21081 0.99174 0.95458 0.97929 1.21090 1.01414 0.99774 0.92223 1.19407 0.98863 0.93400 0.94538 0.92459 0.92309 0.92131 0.92355 0.92445 0.92227 0.91316 0.90843 0.90698 0.90488 0.76148 0.83847 0.85450 0.92835 0.92924 0.94687 0.96907 0.93108 0.84802 0.86189 0.86381 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.17 37.16 0.30 -0.78 16 2 C -0.02 -0.21 0.63 -155.83 -0.10 -0.30 16 3 C -0.14 -1.00 7.97 37.16 0.30 -0.70 16 4 C -0.11 -0.80 4.69 -26.69 -0.13 -0.93 16 5 C -0.13 -1.08 5.38 -26.70 -0.14 -1.22 16 6 C 0.19 2.14 2.59 -69.26 -0.18 1.96 16 7 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 8 N -0.72 -8.90 4.85 -55.10 -0.27 -9.16 16 9 C 0.48 7.29 5.58 -10.99 -0.06 7.23 16 10 O -0.55 -9.57 13.99 5.55 0.08 -9.49 16 11 C 0.08 1.27 3.15 -68.86 -0.22 1.05 16 12 H 0.10 1.51 8.14 -51.94 -0.42 1.08 16 13 N -0.81 -13.35 8.44 -5.66 -0.05 -13.40 16 14 C -0.09 -1.89 4.78 -26.73 -0.13 -2.01 16 15 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 16 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 24 C -0.09 -1.18 5.55 -104.64 -0.58 -1.76 16 25 C -0.10 -1.53 8.98 -39.52 -0.36 -1.88 16 26 C -0.12 -1.70 10.04 -39.76 -0.40 -2.10 16 27 C -0.12 -1.39 10.05 -39.68 -0.40 -1.79 16 28 C -0.13 -1.39 8.90 -39.44 -0.35 -1.74 16 29 C -0.06 -0.68 4.70 -104.64 -0.49 -1.18 16 30 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.51 6.45 -51.93 -0.33 0.18 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.40 6.38 -51.93 -0.33 0.07 16 36 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.63 6.26 -51.93 -0.33 0.31 16 40 H 0.40 4.30 8.59 -40.82 -0.35 3.95 16 41 H 0.35 5.85 8.58 -39.29 -0.34 5.51 16 42 H 0.33 4.79 9.06 -39.29 -0.36 4.43 16 43 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.03 0.97 7.75 -51.93 -0.40 0.56 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 48 H 0.13 2.27 4.37 -52.49 -0.23 2.04 16 49 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 50 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 51 H 0.12 1.05 6.33 -52.49 -0.33 0.71 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -32.27 394.93 -10.47 -42.74 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -8.42 Total: 11.74 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.48 Total: -18.98 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.42 Total: -48.76 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.27 -10.47 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.840 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds